Wall clock time and date at job start Tue Mar 31 2020 22:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42896 * 113.99733 * 2 1 4 4 C 1.53003 * 109.46925 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46956 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.47268 * 179.97438 * 5 4 3 7 7 C 1.50701 * 109.47527 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99627 * 0.02562 * 7 6 5 9 9 N 1.35140 * 120.00064 * 180.02562 * 7 6 5 10 10 C 1.44441 * 118.20106 * 0.55180 * 9 7 6 11 11 C 1.54707 * 109.52927 * 269.42517 * 10 9 7 12 12 C 1.47151 * 110.23625 * 289.60220 * 11 10 9 13 13 C 1.52310 * 114.86773 * 64.49434 * 12 11 10 14 14 C 1.50209 * 111.77136 * 274.55825 * 13 12 11 15 15 C 1.53783 * 112.45960 * 321.73156 * 14 13 12 16 16 C 1.54875 * 103.84578 * 226.10057 * 15 14 13 17 17 N 1.48264 * 102.95529 * 34.87010 * 16 15 14 18 18 C 1.37040 * 127.60707 * 137.02670 * 17 16 15 19 19 H 1.07998 * 119.99710 * 348.20552 * 18 17 16 20 20 C 1.38809 * 120.00115 * 168.19787 * 18 17 16 21 21 N 1.31625 * 119.99888 * 350.31924 * 20 18 17 22 22 Si 1.86798 * 120.00233 * 170.31865 * 20 18 17 23 23 H 1.48497 * 109.46908 * 59.99799 * 22 20 18 24 24 H 1.48494 * 109.47323 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.46873 * 300.00107 * 22 20 18 26 26 C 1.47949 * 104.46772 * 317.09704 * 17 16 15 27 27 C 1.47201 * 118.42979 * 180.02562 * 9 7 6 28 28 H 1.09000 * 109.47535 * 300.00221 * 1 2 3 29 29 H 1.09000 * 109.47171 * 60.00352 * 1 2 3 30 30 H 1.09006 * 109.47085 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47644 * 59.99306 * 3 2 1 32 32 H 1.09000 * 109.46960 * 299.99614 * 3 2 1 33 33 H 1.08997 * 109.47557 * 59.99698 * 4 3 2 34 34 H 1.09000 * 109.46853 * 299.99516 * 4 3 2 35 35 H 1.09003 * 109.47228 * 60.00027 * 5 4 3 36 36 H 1.09000 * 109.47256 * 299.99651 * 5 4 3 37 37 H 1.09003 * 109.46610 * 60.00095 * 6 5 4 38 38 H 1.09000 * 109.47062 * 300.00216 * 6 5 4 39 39 H 1.08979 * 109.58713 * 149.34543 * 10 9 7 40 40 H 1.09024 * 109.50778 * 29.42275 * 10 9 7 41 41 H 1.09063 * 109.24076 * 169.74655 * 11 10 9 42 42 H 1.08859 * 109.64929 * 50.03403 * 11 10 9 43 43 H 1.09602 * 107.65369 * 184.85268 * 12 11 10 44 44 H 1.08558 * 108.32784 * 300.72022 * 12 11 10 45 45 H 1.09385 * 109.40114 * 35.91349 * 13 12 11 46 46 H 1.09585 * 109.07524 * 153.89339 * 13 12 11 47 47 H 1.08875 * 111.08298 * 343.29096 * 15 14 13 48 48 H 1.08687 * 110.91141 * 107.47260 * 15 14 13 49 49 H 1.08751 * 110.43735 * 153.06716 * 16 15 14 50 50 H 1.08713 * 110.56543 * 276.59906 * 16 15 14 51 51 H 0.97001 * 119.99820 * 179.97438 * 21 20 18 52 52 H 1.09122 * 110.38398 * 275.22293 * 26 17 16 53 53 H 1.09041 * 110.61641 * 153.11058 * 26 17 16 54 54 H 1.09386 * 108.62586 * 12.89884 * 27 9 7 55 55 H 1.09236 * 108.96468 * 255.48563 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1577 2.5824 -0.0013 6 6 5.6829 2.4617 -0.0013 7 6 6.2959 3.8384 -0.0026 8 8 5.5829 4.8196 -0.0029 9 7 7.6399 3.9797 -0.0033 10 6 8.4518 2.7851 -0.0151 11 6 8.7567 2.3527 1.4387 12 6 9.6889 3.3021 2.0672 13 6 9.1439 4.7135 2.2429 14 6 9.3413 5.5448 1.0075 15 6 10.6898 5.2678 0.3222 16 6 11.2480 6.6800 0.0179 17 7 10.7782 7.4795 1.1749 18 6 11.4857 8.4088 1.8916 19 1 12.5544 8.4929 1.7601 20 6 10.8288 9.2422 2.7865 21 7 9.5132 9.2753 2.8107 22 14 11.8118 10.3166 3.9564 23 1 12.6748 11.2384 3.1749 24 1 10.8818 11.1065 4.8028 25 1 12.6603 9.4585 4.8218 26 6 9.3785 7.0462 1.3796 27 6 8.2015 5.3404 -0.0040 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6885 1.8465 0.8899 32 1 1.6885 1.8463 -0.8900 33 1 3.8568 0.6439 -0.8908 34 1 3.8574 0.6437 0.8892 35 1 3.8364 3.1236 0.8887 36 1 3.8357 3.1231 -0.8913 37 1 6.0045 1.9204 -0.8911 38 1 6.0046 1.9212 0.8889 39 1 9.3868 2.9841 -0.5382 40 1 7.9153 1.9854 -0.5263 41 1 9.2095 1.3605 1.4310 42 1 7.8324 2.3213 2.0128 43 1 9.9434 2.9109 3.0589 44 1 10.6026 3.3219 1.4814 45 1 8.0776 4.6642 2.4817 46 1 9.6579 5.1938 3.0832 47 1 11.3724 4.7515 0.9953 48 1 10.5491 4.7087 -0.5991 49 1 12.3347 6.6591 -0.0186 50 1 10.8303 7.0641 -0.9094 51 1 9.0542 9.8574 3.4363 52 1 8.7077 7.6065 0.7263 53 1 9.0842 7.1784 2.4212 54 1 7.4009 6.0489 0.2277 55 1 8.5758 5.5694 -1.0043 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671594060.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:39 Heat of formation + Delta-G solvation = -88.471359 kcal Electronic energy + Delta-G solvation = -30977.357445 eV Core-core repulsion = 27013.703353 eV Total energy + Delta-G solvation = -3963.654092 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.69142 -39.91861 -38.90671 -37.51859 -35.74328 -34.97896 -34.38177 -32.77912 -30.87296 -30.06167 -28.38151 -27.83281 -26.94415 -26.32596 -25.05364 -23.99101 -22.72707 -22.13234 -21.60399 -19.82421 -19.39390 -18.81412 -17.98193 -17.47407 -17.31837 -17.10489 -16.82801 -16.59052 -16.18190 -15.92948 -15.72510 -15.44492 -15.08103 -14.90325 -14.66611 -14.48397 -14.15143 -13.85608 -13.70504 -13.49661 -13.29628 -13.24705 -13.06504 -12.79629 -12.71074 -12.62968 -12.59443 -12.40532 -12.26508 -12.09103 -12.07639 -11.86201 -11.82084 -11.65295 -11.63847 -11.49139 -11.28933 -11.16375 -11.00715 -10.72899 -10.63309 -10.61615 -9.52579 -8.90123 -7.89683 -5.24682 1.42838 1.46591 1.53104 1.68717 2.08538 2.48037 2.83304 3.29516 3.54776 3.68151 3.77687 3.88039 3.94045 3.98370 3.99290 4.13999 4.17769 4.27439 4.33911 4.36091 4.38800 4.42297 4.53139 4.53570 4.55571 4.61054 4.70972 4.72875 4.76482 4.81559 4.85594 4.87095 4.88796 4.92095 4.95768 5.01370 5.02249 5.16045 5.19949 5.26877 5.29884 5.31597 5.37345 5.41675 5.43142 5.47195 5.58061 5.65733 5.74057 5.79900 6.18026 6.22479 6.53019 7.01823 7.28071 7.71184 8.48252 9.23260 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018936 B = 0.002279 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.336392 B =12282.472475 C =12957.623192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.415 6.415 3 C 0.055 3.945 4 C -0.107 4.107 5 C -0.099 4.099 6 C -0.126 4.126 7 C 0.495 3.505 8 O -0.596 6.596 9 N -0.596 5.596 10 C 0.098 3.902 11 C -0.129 4.129 12 C -0.117 4.117 13 C -0.081 4.081 14 C -0.071 4.071 15 C -0.104 4.104 16 C 0.113 3.887 17 N -0.621 5.621 18 C -0.235 4.235 19 H 0.085 0.915 20 C -0.070 4.070 21 N -0.952 5.952 22 Si 0.978 3.022 23 H -0.274 1.274 24 H -0.298 1.298 25 H -0.275 1.275 26 C 0.181 3.819 27 C 0.136 3.864 28 H 0.045 0.955 29 H 0.047 0.953 30 H 0.098 0.902 31 H 0.048 0.952 32 H 0.052 0.948 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.051 0.949 36 H 0.058 0.942 37 H 0.127 0.873 38 H 0.117 0.883 39 H 0.090 0.910 40 H 0.115 0.885 41 H 0.108 0.892 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.078 0.922 45 H 0.037 0.963 46 H 0.029 0.971 47 H 0.077 0.923 48 H 0.093 0.907 49 H 0.059 0.941 50 H 0.021 0.979 51 H 0.246 0.754 52 H -0.020 1.020 53 H 0.040 0.960 54 H 0.047 0.953 55 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.499 -24.987 -7.598 27.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.334 6.334 3 C -0.021 4.021 4 C -0.145 4.145 5 C -0.137 4.137 6 C -0.165 4.165 7 C 0.286 3.714 8 O -0.477 6.477 9 N -0.327 5.327 10 C -0.024 4.024 11 C -0.167 4.167 12 C -0.154 4.154 13 C -0.119 4.119 14 C -0.074 4.074 15 C -0.142 4.142 16 C -0.012 4.012 17 N -0.346 5.346 18 C -0.363 4.363 19 H 0.102 0.898 20 C -0.263 4.263 21 N -0.600 5.600 22 Si 0.806 3.194 23 H -0.200 1.200 24 H -0.224 1.224 25 H -0.201 1.201 26 C 0.054 3.946 27 C 0.013 3.987 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.117 0.883 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.145 0.855 38 H 0.135 0.865 39 H 0.108 0.892 40 H 0.133 0.867 41 H 0.126 0.874 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.097 0.903 45 H 0.056 0.944 46 H 0.048 0.952 47 H 0.095 0.905 48 H 0.112 0.888 49 H 0.078 0.922 50 H 0.039 0.961 51 H 0.055 0.945 52 H -0.002 1.002 53 H 0.059 0.941 54 H 0.065 0.935 55 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.714 -24.449 -7.444 27.002 hybrid contribution -0.174 2.150 0.950 2.357 sum -8.888 -22.298 -6.494 24.867 Atomic orbital electron populations 1.22916 0.79778 1.03820 1.00644 1.87811 1.21253 1.28798 1.95584 1.22630 0.94798 0.84226 1.00492 1.21423 0.92408 0.96453 1.04181 1.21174 0.93722 0.96471 1.02338 1.21756 0.95693 0.92178 1.06904 1.21809 0.82159 0.92820 0.74651 1.90686 1.61946 1.43123 1.51958 1.47737 1.06010 1.06772 1.72183 1.21980 0.96874 0.85923 0.97588 1.21279 0.99825 0.99856 0.95782 1.20397 1.00393 0.92854 1.01755 1.20740 0.99390 0.96232 0.95525 1.21278 0.95110 0.95745 0.95241 1.22662 0.94757 0.96581 1.00218 1.22063 0.98052 0.91684 0.89393 1.45256 1.10950 1.45193 1.33169 1.19415 0.91211 1.09465 1.16253 0.89768 1.25734 0.96605 1.00836 1.03109 1.70150 1.07700 1.42526 1.39673 0.85155 0.77239 0.78334 0.78652 1.19952 1.22435 1.20121 1.21475 0.85326 0.89687 0.98115 1.21660 0.95400 0.83441 0.98223 0.93592 0.93388 0.88328 0.93395 0.93019 0.89871 0.90355 0.93050 0.92342 0.85517 0.86458 0.89181 0.86720 0.87403 0.92405 0.92561 0.90343 0.94432 0.95176 0.90487 0.88821 0.92231 0.96077 0.94519 1.00176 0.94137 0.93458 0.91850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 11.01 113.37 1.25 1.54 16 2 O -0.41 -7.38 10.70 -148.98 -1.59 -8.97 16 3 C 0.05 0.87 5.94 71.98 0.43 1.30 16 4 C -0.11 -1.48 5.58 30.60 0.17 -1.31 16 5 C -0.10 -1.77 4.50 30.59 0.14 -1.63 16 6 C -0.13 -1.98 4.17 29.85 0.12 -1.85 16 7 C 0.50 13.44 7.63 87.60 0.67 14.11 16 8 O -0.60 -22.87 15.19 -3.04 -0.05 -22.92 16 9 N -0.60 -15.02 2.31 -818.84 -1.89 -16.91 16 10 C 0.10 1.48 5.18 87.35 0.45 1.94 16 11 C -0.13 -1.95 5.64 29.36 0.17 -1.79 16 12 C -0.12 -2.63 4.82 28.55 0.14 -2.49 16 13 C -0.08 -2.75 4.36 29.47 0.13 -2.62 16 14 C -0.07 -2.61 0.62 -51.98 -0.03 -2.64 16 15 C -0.10 -3.24 4.63 31.50 0.15 -3.09 16 16 C 0.11 4.55 7.28 86.68 0.63 5.18 16 17 N -0.62 -32.59 3.37 -687.13 -2.31 -34.90 16 18 C -0.23 -13.41 10.36 84.02 0.87 -12.54 16 19 H 0.08 4.54 7.85 -2.91 -0.02 4.52 16 20 C -0.07 -4.11 5.42 84.86 0.46 -3.65 16 21 N -0.95 -60.19 10.83 21.65 0.23 -59.96 16 22 Si 0.98 46.96 29.56 68.60 2.03 48.99 16 23 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 24 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 25 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 26 C 0.18 9.26 4.82 86.69 0.42 9.67 16 27 C 0.14 4.64 4.84 86.50 0.42 5.06 16 28 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.05 1.13 8.10 -2.39 -0.02 1.11 16 36 H 0.06 1.20 8.10 -2.39 -0.02 1.18 16 37 H 0.13 1.17 7.27 -2.39 -0.02 1.15 16 38 H 0.12 1.37 7.18 -2.39 -0.02 1.35 16 39 H 0.09 1.25 6.74 -2.40 -0.02 1.23 16 40 H 0.11 0.91 6.16 -2.37 -0.01 0.89 16 41 H 0.11 0.94 8.15 -2.35 -0.02 0.92 16 42 H 0.06 0.95 7.34 -2.46 -0.02 0.94 16 43 H 0.06 1.22 8.18 -2.07 -0.02 1.20 16 44 H 0.08 1.64 5.41 -2.62 -0.01 1.63 16 45 H 0.04 1.36 7.78 -2.18 -0.02 1.34 16 46 H 0.03 1.22 7.71 -2.08 -0.02 1.20 16 47 H 0.08 2.29 6.26 -2.45 -0.02 2.27 16 48 H 0.09 2.24 6.48 -2.55 -0.02 2.22 16 49 H 0.06 2.23 8.12 -2.52 -0.02 2.21 16 50 H 0.02 0.86 8.12 -2.54 -0.02 0.84 16 51 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 52 H -0.02 -1.13 7.32 -2.32 -0.02 -1.15 16 53 H 0.04 2.39 5.98 -2.37 -0.01 2.38 16 54 H 0.05 2.04 6.19 -2.18 -0.01 2.03 16 55 H 0.06 2.07 7.66 -2.26 -0.02 2.05 16 Total: -1.00 -79.72 407.47 3.84 -75.87 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: 0.85 Total: 13.59 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: 6.57 Total: 5.20 kcal Atomic # 7 Polarization: -107.79 SS G_CDS: -3.97 Total: -111.76 kcal Atomic # 8 Polarization: -30.25 SS G_CDS: -1.64 Total: -31.89 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.99 kcal Total: -79.72 3.84 -75.87 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671594060.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.599 kcal (2) G-P(sol) polarization free energy of solvation -79.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds