Wall clock time and date at job start Tue Mar 31 2020 22:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 113.99901 * 2 1 4 4 C 1.52997 * 109.47087 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47658 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47658 * 180.02562 * 5 4 3 7 7 C 1.50695 * 109.47123 * 179.97438 * 6 5 4 8 8 O 1.21277 * 120.00109 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00209 * 179.97438 * 7 6 5 10 10 C 1.47467 * 118.68505 * 0.02562 * 9 7 6 11 11 C 1.54003 * 112.20527 * 137.96482 * 10 9 7 12 12 C 1.50806 * 110.40661 * 319.23974 * 11 10 9 13 13 C 1.52848 * 109.44856 * 91.66832 * 12 11 10 14 14 C 1.46801 * 113.93992 * 275.82679 * 13 12 11 15 15 C 1.54716 * 112.87015 * 185.25027 * 14 13 12 16 16 C 1.54405 * 102.89743 * 86.50071 * 15 14 13 17 17 N 1.47061 * 107.28459 * 21.79288 * 16 15 14 18 18 C 1.36935 * 125.64045 * 180.81272 * 17 16 15 19 19 H 1.07990 * 120.00185 * 174.01933 * 18 17 16 20 20 C 1.38813 * 119.99860 * 354.01203 * 18 17 16 21 21 N 1.31623 * 119.99938 * 6.87936 * 20 18 17 22 22 Si 1.86797 * 120.00141 * 186.87944 * 20 18 17 23 23 H 1.48508 * 109.47163 * 94.98770 * 22 20 18 24 24 H 1.48500 * 109.47418 * 214.98526 * 22 20 18 25 25 H 1.48498 * 109.47270 * 334.99037 * 22 20 18 26 26 C 1.47515 * 108.71748 * 1.07557 * 17 16 15 27 27 C 1.44733 * 118.69489 * 179.97438 * 9 7 6 28 28 H 1.08997 * 109.46954 * 59.99797 * 1 2 3 29 29 H 1.08997 * 109.47339 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46907 * 300.00236 * 1 2 3 31 31 H 1.08999 * 109.47285 * 60.00390 * 3 2 1 32 32 H 1.09004 * 109.47257 * 300.00004 * 3 2 1 33 33 H 1.09000 * 109.47736 * 59.99761 * 4 3 2 34 34 H 1.09004 * 109.47275 * 299.99599 * 4 3 2 35 35 H 1.09004 * 109.47192 * 59.99359 * 5 4 3 36 36 H 1.09004 * 109.46441 * 300.00099 * 5 4 3 37 37 H 1.08999 * 109.46853 * 59.99977 * 6 5 4 38 38 H 1.09004 * 109.46963 * 300.00036 * 6 5 4 39 39 H 1.09001 * 108.93638 * 17.26162 * 10 9 7 40 40 H 1.09006 * 108.93392 * 258.66350 * 10 9 7 41 41 H 1.09005 * 109.31350 * 198.95088 * 11 10 9 42 42 H 1.09001 * 109.31399 * 79.52470 * 11 10 9 43 43 H 1.08999 * 109.47346 * 331.66851 * 12 11 10 44 44 H 1.09008 * 109.47354 * 211.66278 * 12 11 10 45 45 H 1.09003 * 108.58712 * 154.67952 * 13 12 11 46 46 H 1.09003 * 108.58799 * 36.98528 * 13 12 11 47 47 H 1.09000 * 110.72727 * 328.14759 * 15 14 13 48 48 H 1.09001 * 110.72548 * 204.85012 * 15 14 13 49 49 H 1.09003 * 109.87675 * 262.37407 * 16 15 14 50 50 H 1.09002 * 109.87832 * 141.21500 * 16 15 14 51 51 H 0.97002 * 120.00111 * 179.97438 * 21 20 18 52 52 H 1.09002 * 110.37227 * 95.08472 * 26 17 16 53 53 H 1.09004 * 110.36983 * 217.42674 * 26 17 16 54 54 H 1.08996 * 109.52369 * 150.59036 * 27 9 7 55 55 H 1.09007 * 109.51822 * 30.40797 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1578 2.5824 0.0000 6 6 5.6830 2.4616 -0.0013 7 6 6.2959 3.8383 -0.0013 8 8 5.5831 4.8194 -0.0008 9 7 7.6363 3.9792 -0.0018 10 6 8.4755 2.7666 -0.0030 11 6 9.6771 2.8914 -0.9581 12 6 9.2619 3.5689 -2.2398 13 6 9.4835 5.0760 -2.1137 14 6 8.3780 5.7881 -1.4613 15 6 8.5682 7.3236 -1.4621 16 6 7.9709 7.7442 -2.8224 17 7 7.0544 6.6751 -3.2465 18 6 6.3341 6.6570 -4.4109 19 1 5.7612 5.7813 -4.6779 20 6 6.3400 7.7643 -5.2480 21 7 7.1412 8.7772 -4.9938 22 14 5.2109 7.8170 -6.7351 23 1 3.9592 8.5337 -6.3812 24 1 5.8905 8.5278 -7.8478 25 1 4.8850 6.4315 -7.1586 26 6 7.0347 5.6285 -2.2071 27 6 8.1946 5.3145 -0.0024 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8568 0.6439 -0.8908 34 1 3.8574 0.6437 0.8892 35 1 3.8365 3.1228 0.8904 36 1 3.8358 3.1238 -0.8896 37 1 6.0039 1.9214 -0.8920 38 1 6.0053 1.9199 0.8880 39 1 7.8671 1.9156 -0.3092 40 1 8.8439 2.5905 1.0077 41 1 10.0625 1.8971 -1.1843 42 1 10.4603 3.4778 -0.4776 43 1 8.2070 3.3713 -2.4301 44 1 9.8588 3.1816 -3.0656 45 1 9.6234 5.4913 -3.1118 46 1 10.3940 5.2464 -1.5391 47 1 9.6260 7.5813 -1.4089 48 1 8.0168 7.7810 -0.6406 49 1 8.7679 7.8620 -3.5565 50 1 7.4233 8.6803 -2.7131 51 1 7.1457 9.5508 -5.5790 52 1 6.2001 5.7876 -1.5242 53 1 6.9694 4.6411 -2.6641 54 1 9.1610 5.3055 0.5017 55 1 7.5178 5.9925 0.5177 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671594061.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:43 Heat of formation + Delta-G solvation = -85.351114 kcal Electronic energy + Delta-G solvation = -31719.715160 eV Core-core repulsion = 27756.196372 eV Total energy + Delta-G solvation = -3963.518788 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.89419 -39.68705 -38.90713 -37.52652 -35.74337 -35.03958 -34.23087 -32.42800 -31.04056 -30.40320 -28.18191 -27.70412 -27.10265 -26.17099 -25.04285 -24.23554 -22.35716 -21.99185 -21.73926 -19.96752 -19.31883 -18.91786 -18.09124 -17.40303 -17.26814 -17.08862 -16.84254 -16.52658 -16.17226 -15.98582 -15.81100 -15.25909 -15.16225 -14.91004 -14.55083 -14.25062 -14.10492 -13.93301 -13.70927 -13.60350 -13.45315 -13.12114 -12.93866 -12.86376 -12.67430 -12.60618 -12.54408 -12.39045 -12.25502 -12.08956 -12.02072 -11.95942 -11.88941 -11.69030 -11.61966 -11.56513 -11.23371 -11.18587 -11.10249 -10.69903 -10.63425 -10.54852 -9.40131 -8.80507 -7.87405 -5.19263 1.38527 1.42220 1.50514 1.76189 2.19135 2.47036 2.81724 3.30086 3.56127 3.66844 3.73029 3.92442 3.97538 3.99603 4.04369 4.10400 4.19349 4.31280 4.34466 4.37676 4.38880 4.48615 4.51670 4.54232 4.56178 4.65598 4.66114 4.72558 4.77045 4.78912 4.80546 4.84108 4.86728 4.88377 4.99210 5.01244 5.09870 5.14469 5.24930 5.27909 5.30615 5.34921 5.40215 5.41379 5.42056 5.56209 5.65294 5.69430 5.76844 5.87092 6.19769 6.20372 6.53880 7.10127 7.38911 7.79667 8.46445 9.23929 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.008282 B = 0.003672 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3380.183984 B = 7622.431930 C =10089.822075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.413 6.413 3 C 0.055 3.945 4 C -0.106 4.106 5 C -0.098 4.098 6 C -0.129 4.129 7 C 0.493 3.507 8 O -0.577 6.577 9 N -0.602 5.602 10 C 0.101 3.899 11 C -0.122 4.122 12 C -0.112 4.112 13 C -0.091 4.091 14 C -0.071 4.071 15 C -0.123 4.123 16 C 0.190 3.810 17 N -0.626 5.626 18 C -0.238 4.238 19 H 0.071 0.929 20 C -0.067 4.067 21 N -0.950 5.950 22 Si 0.975 3.025 23 H -0.289 1.289 24 H -0.289 1.289 25 H -0.268 1.268 26 C 0.141 3.859 27 C 0.138 3.862 28 H 0.043 0.957 29 H 0.100 0.900 30 H 0.049 0.951 31 H 0.054 0.946 32 H 0.042 0.958 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.062 0.938 36 H 0.042 0.958 37 H 0.108 0.892 38 H 0.127 0.873 39 H 0.099 0.901 40 H 0.093 0.907 41 H 0.101 0.899 42 H 0.077 0.923 43 H 0.045 0.955 44 H 0.062 0.938 45 H 0.023 0.977 46 H 0.081 0.919 47 H 0.085 0.915 48 H 0.063 0.937 49 H 0.005 0.995 50 H -0.002 1.002 51 H 0.246 0.754 52 H 0.037 0.963 53 H 0.019 0.981 54 H 0.105 0.895 55 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.514 -20.517 16.100 26.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.333 6.333 3 C -0.021 4.021 4 C -0.144 4.144 5 C -0.136 4.136 6 C -0.168 4.168 7 C 0.283 3.717 8 O -0.457 6.457 9 N -0.334 5.334 10 C -0.020 4.020 11 C -0.160 4.160 12 C -0.149 4.149 13 C -0.128 4.128 14 C -0.073 4.073 15 C -0.161 4.161 16 C 0.065 3.935 17 N -0.352 5.352 18 C -0.368 4.368 19 H 0.089 0.911 20 C -0.260 4.260 21 N -0.600 5.600 22 Si 0.803 3.197 23 H -0.216 1.216 24 H -0.216 1.216 25 H -0.193 1.193 26 C 0.017 3.983 27 C 0.014 3.986 28 H 0.061 0.939 29 H 0.118 0.882 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.092 0.908 34 H 0.105 0.895 35 H 0.080 0.920 36 H 0.061 0.939 37 H 0.126 0.874 38 H 0.145 0.855 39 H 0.117 0.883 40 H 0.111 0.889 41 H 0.119 0.881 42 H 0.095 0.905 43 H 0.064 0.936 44 H 0.081 0.919 45 H 0.042 0.958 46 H 0.099 0.901 47 H 0.104 0.896 48 H 0.082 0.918 49 H 0.023 0.977 50 H 0.016 0.984 51 H 0.055 0.945 52 H 0.054 0.946 53 H 0.038 0.962 54 H 0.123 0.877 55 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.256 -20.080 15.950 25.674 hybrid contribution -1.092 1.378 -1.536 2.334 sum 0.164 -18.701 14.414 23.612 Atomic orbital electron populations 1.22919 0.79793 1.03851 1.00608 1.87807 1.21246 1.28676 1.95576 1.22621 0.94848 0.84258 1.00393 1.21419 0.92395 0.96518 1.04048 1.21154 0.94006 0.96352 1.02120 1.21709 0.95670 0.93092 1.06347 1.21417 0.82532 0.92482 0.75233 1.90667 1.61859 1.42497 1.50692 1.47821 1.05796 1.07293 1.72481 1.22317 0.92915 0.85523 1.01229 1.21741 0.97538 1.02647 0.94090 1.21051 1.00978 0.93899 0.99007 1.20197 0.97316 0.95947 0.99346 1.20939 0.95509 0.94553 0.96295 1.22782 1.01041 0.95308 0.97007 1.20833 0.90926 0.89938 0.91801 1.44822 1.50420 1.21096 1.18905 1.19368 1.21280 0.99268 0.96861 0.91136 1.25639 1.01474 0.96311 1.02594 1.70212 1.40985 1.08410 1.40360 0.85110 0.78214 0.77802 0.78586 1.21639 1.21588 1.19302 1.22112 0.96354 0.90164 0.89695 1.21381 0.99619 0.83595 0.93991 0.93853 0.88187 0.93247 0.92738 0.93919 0.90837 0.89510 0.91954 0.93885 0.87425 0.85453 0.88262 0.88852 0.88081 0.90458 0.93638 0.91891 0.95837 0.90073 0.89616 0.91842 0.97663 0.98406 0.94478 0.94561 0.96247 0.87715 0.92210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 11.01 113.37 1.25 1.60 16 2 O -0.41 -8.51 10.70 -148.98 -1.59 -10.10 16 3 C 0.06 1.07 5.94 71.98 0.43 1.50 16 4 C -0.11 -1.83 5.58 30.59 0.17 -1.66 16 5 C -0.10 -2.11 4.50 30.59 0.14 -1.97 16 6 C -0.13 -2.35 4.03 29.85 0.12 -2.23 16 7 C 0.49 13.66 6.56 87.66 0.58 14.23 16 8 O -0.58 -22.37 12.66 -3.02 -0.04 -22.41 16 9 N -0.60 -13.91 2.07 -818.83 -1.70 -15.61 16 10 C 0.10 1.33 5.95 86.53 0.52 1.85 16 11 C -0.12 -1.71 5.68 30.22 0.17 -1.54 16 12 C -0.11 -2.71 5.43 29.83 0.16 -2.54 16 13 C -0.09 -2.78 4.14 28.62 0.12 -2.66 16 14 C -0.07 -2.49 0.49 -52.51 -0.03 -2.51 16 15 C -0.12 -4.87 5.91 31.66 0.19 -4.68 16 16 C 0.19 10.32 5.15 86.75 0.45 10.76 16 17 N -0.63 -35.64 3.40 -692.37 -2.35 -37.99 16 18 C -0.24 -14.70 10.26 84.03 0.86 -13.84 16 19 H 0.07 4.25 7.84 -2.92 -0.02 4.23 16 20 C -0.07 -4.14 5.48 84.86 0.47 -3.68 16 21 N -0.95 -61.08 10.36 21.65 0.22 -60.86 16 22 Si 0.97 49.07 29.56 68.60 2.03 51.10 16 23 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 24 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 25 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16 26 C 0.14 6.52 4.71 86.68 0.41 6.93 16 27 C 0.14 3.78 4.45 87.21 0.39 4.16 16 28 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 31 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 35 H 0.06 1.43 8.10 -2.39 -0.02 1.41 16 36 H 0.04 1.19 8.10 -2.38 -0.02 1.17 16 37 H 0.11 1.68 7.41 -2.39 -0.02 1.66 16 38 H 0.13 1.39 8.03 -2.39 -0.02 1.37 16 39 H 0.10 0.96 5.82 -2.39 -0.01 0.94 16 40 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 41 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16 42 H 0.08 0.97 7.34 -2.39 -0.02 0.95 16 43 H 0.04 1.33 5.54 -2.39 -0.01 1.31 16 44 H 0.06 1.47 8.14 -2.38 -0.02 1.46 16 45 H 0.02 0.91 7.91 -2.39 -0.02 0.89 16 46 H 0.08 1.98 7.41 -2.39 -0.02 1.96 16 47 H 0.09 2.90 8.03 -2.39 -0.02 2.88 16 48 H 0.06 2.45 7.64 -2.39 -0.02 2.43 16 49 H 0.01 0.31 7.55 -2.39 -0.02 0.29 16 50 H 0.00 -0.14 7.36 -2.39 -0.02 -0.16 16 51 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 52 H 0.04 1.87 4.88 -2.39 -0.01 1.86 16 53 H 0.02 0.91 6.10 -2.38 -0.01 0.89 16 54 H 0.10 2.11 8.09 -2.39 -0.02 2.09 16 55 H 0.06 1.94 6.89 -2.38 -0.02 1.92 16 Total: -1.00 -83.13 405.14 3.79 -79.34 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: 0.84 Total: 12.80 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: 6.38 Total: 3.74 kcal Atomic # 7 Polarization: -110.63 SS G_CDS: -3.83 Total: -114.46 kcal Atomic # 8 Polarization: -30.88 SS G_CDS: -1.63 Total: -32.51 kcal Atomic # 14 Polarization: 49.07 SS G_CDS: 2.03 Total: 51.10 kcal Total: -83.13 3.79 -79.34 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671594061.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.010 kcal (2) G-P(sol) polarization free energy of solvation -83.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds