Wall clock time and date at job start Tue Mar 31 2020 21:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42900 * 109.47117 * 2 1 4 4 C 1.42897 * 114.00286 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47054 * 330.00195 * 4 3 2 6 6 C 1.52996 * 109.47065 * 90.00211 * 4 3 2 7 7 C 1.50702 * 109.47217 * 209.99901 * 4 3 2 8 8 O 1.21274 * 120.00271 * 350.75166 * 7 4 3 9 9 N 1.34778 * 119.99871 * 170.75016 * 7 4 3 10 10 C 1.46928 * 120.63065 * 4.66987 * 9 7 4 11 11 C 1.52764 * 109.00991 * 233.58385 * 10 9 7 12 12 C 1.53039 * 109.38252 * 305.59107 * 11 10 9 13 13 C 1.53039 * 109.54044 * 61.23707 * 12 11 10 14 14 H 1.09000 * 109.52280 * 58.60597 * 13 12 11 15 15 C 1.53004 * 109.49838 * 178.68531 * 13 12 11 16 16 C 1.53040 * 109.46024 * 299.86500 * 15 13 12 17 17 C 1.53187 * 109.31409 * 178.60008 * 16 15 13 18 18 N 1.46925 * 108.76417 * 54.65358 * 17 16 15 19 19 C 1.36944 * 120.63047 * 126.35956 * 18 17 16 20 20 H 1.07996 * 120.00058 * 206.44951 * 19 18 17 21 21 C 1.38813 * 119.99644 * 26.44963 * 19 18 17 22 22 N 1.31617 * 119.99942 * 16.06355 * 21 19 18 23 23 Si 1.86795 * 119.99995 * 196.06035 * 21 19 18 24 24 H 1.48504 * 109.47158 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47286 * 120.00193 * 23 21 19 26 26 H 1.48495 * 109.47471 * 240.00276 * 23 21 19 27 27 C 1.46916 * 118.74135 * 306.38641 * 18 17 16 28 28 C 1.53039 * 109.45850 * 179.81036 * 15 13 12 29 29 C 1.46928 * 120.63132 * 184.94833 * 9 7 4 30 30 H 1.08998 * 109.47313 * 60.00368 * 1 2 3 31 31 H 1.08997 * 109.47442 * 300.00027 * 1 2 3 32 32 H 1.09007 * 109.47284 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47313 * 119.99632 * 2 1 3 34 34 H 1.08997 * 109.47442 * 239.99973 * 2 1 3 35 35 H 1.08997 * 109.47594 * 56.40295 * 6 4 3 36 36 H 1.09001 * 109.47802 * 176.40329 * 6 4 3 37 37 H 1.09007 * 109.47409 * 296.40206 * 6 4 3 38 38 H 1.08996 * 109.58616 * 353.41624 * 10 9 7 39 39 H 1.09000 * 109.58627 * 113.84634 * 10 9 7 40 40 H 1.08998 * 109.56799 * 185.55193 * 11 10 9 41 41 H 1.09003 * 109.38693 * 65.51146 * 11 10 9 42 42 H 1.09000 * 109.45861 * 301.21780 * 12 11 10 43 43 H 1.09004 * 109.44745 * 181.25141 * 12 11 10 44 44 H 1.09001 * 109.45964 * 59.83481 * 15 13 12 45 45 H 1.09003 * 109.49408 * 298.56621 * 16 15 13 46 46 H 1.09006 * 109.49616 * 58.66030 * 16 15 13 47 47 H 1.09001 * 109.60188 * 294.87023 * 17 16 15 48 48 H 1.08999 * 109.58568 * 174.43269 * 17 16 15 49 49 H 0.97007 * 120.00054 * 179.97438 * 22 21 19 50 50 H 1.09002 * 109.59026 * 293.81859 * 27 18 17 51 51 H 1.09001 * 109.59242 * 173.39447 * 27 18 17 52 52 H 1.08993 * 109.49856 * 301.33558 * 28 15 13 53 53 H 1.09003 * 109.49995 * 61.40301 * 28 15 13 54 54 H 1.08993 * 109.58348 * 246.15450 * 29 9 7 55 55 H 1.08997 * 109.58583 * 6.43963 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.8630 0.6018 0.5147 6 6 3.9397 1.5003 -1.4417 7 6 3.8340 2.7266 0.7110 8 8 2.9918 3.5415 1.0229 9 7 5.1308 2.9536 0.9996 10 6 6.1736 2.0267 0.5391 11 6 7.0140 1.5883 1.7371 12 6 7.5480 2.8253 2.4629 13 6 6.3750 3.6646 2.9747 14 1 5.7617 3.0627 3.6452 15 6 6.9100 4.8839 3.7284 16 6 7.7566 4.4185 4.9153 17 6 8.3191 5.6413 5.6468 18 7 7.2055 6.5278 6.0110 19 6 7.0370 6.9406 7.3058 20 1 6.0539 7.2089 7.6634 21 6 8.1298 7.0141 8.1586 22 7 9.3505 6.9998 7.6667 23 14 7.8679 7.1334 10.0042 24 1 6.4123 7.1304 10.2989 25 1 8.5098 5.9724 10.6714 26 1 8.4731 8.3916 10.5099 27 6 6.2758 6.9626 4.9597 28 6 5.7364 5.7250 4.2357 29 6 5.5280 4.1296 1.7859 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5138 0.8900 34 1 1.8933 -0.5138 -0.8899 35 1 3.4587 2.3207 -1.9741 36 1 5.0194 1.6505 -1.4421 37 1 3.7039 0.5581 -1.9366 38 1 5.7097 1.1533 0.0808 39 1 6.8126 2.5276 -0.1881 40 1 7.8499 0.9791 1.3933 41 1 6.3952 1.0052 2.4192 42 1 8.1468 3.4205 1.7735 43 1 8.1661 2.5135 3.3049 44 1 7.5243 5.4847 3.0577 45 1 7.1367 3.8386 5.5991 46 1 8.5789 3.8000 4.5554 47 1 9.0103 6.1728 4.9927 48 1 8.8402 5.3198 6.5486 49 1 10.1142 7.0516 8.2626 50 1 6.8003 7.6018 4.2495 51 1 5.4487 7.5130 5.4081 52 1 5.1207 6.0365 3.3920 53 1 5.1355 5.1324 4.9255 54 1 6.1132 4.8053 1.1623 55 1 4.6382 4.6446 2.1478 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672172206.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:59:43 Heat of formation + Delta-G solvation = -92.805161 kcal Electronic energy + Delta-G solvation = -31097.864256 eV Core-core repulsion = 27134.022237 eV Total energy + Delta-G solvation = -3963.842019 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.61903 -40.01725 -38.82715 -37.98656 -35.78032 -34.06646 -33.19645 -32.74579 -31.69646 -31.16861 -30.24372 -27.16888 -26.91700 -24.97025 -24.61692 -23.73278 -23.30333 -22.65240 -21.26603 -20.71804 -20.16538 -18.71206 -18.43615 -17.79356 -17.02837 -16.84343 -16.58869 -16.14493 -15.79232 -15.56421 -15.34312 -15.30940 -15.07923 -14.94072 -14.51606 -14.32745 -14.24723 -14.11866 -13.86170 -13.68170 -13.56285 -13.37814 -13.15952 -13.07544 -12.93854 -12.81354 -12.63917 -12.52776 -12.30607 -12.15690 -12.05810 -11.99435 -11.90242 -11.84533 -11.72353 -11.53319 -11.40173 -11.07954 -10.87033 -10.78324 -10.54549 -10.42760 -9.64445 -8.68815 -7.87266 -5.32113 1.43739 1.45146 1.50682 1.56188 1.73364 2.49794 2.81351 3.25707 3.42246 3.67539 3.72175 3.80567 3.84462 3.90521 3.98845 4.09681 4.18397 4.19545 4.21753 4.31538 4.37733 4.42027 4.47759 4.54156 4.57128 4.60531 4.65710 4.71031 4.77257 4.79565 4.83062 4.88963 4.90938 4.92181 5.00998 5.01711 5.06875 5.10972 5.17008 5.20524 5.26068 5.28787 5.33614 5.40518 5.44575 5.51100 5.53884 5.57547 5.67721 5.82654 6.11577 6.39090 6.40866 7.11938 7.14999 7.87127 8.37298 9.18207 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.019195 B = 0.002344 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.359989 B =11943.825659 C =12590.284453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.047 3.953 3 O -0.395 6.395 4 C 0.074 3.926 5 H 0.112 0.888 6 C -0.171 4.171 7 C 0.504 3.496 8 O -0.580 6.580 9 N -0.604 5.604 10 C 0.093 3.907 11 C -0.130 4.130 12 C -0.117 4.117 13 C -0.081 4.081 14 H 0.055 0.945 15 C -0.061 4.061 16 C -0.118 4.118 17 C 0.173 3.827 18 N -0.613 5.613 19 C -0.260 4.260 20 H 0.061 0.939 21 C -0.054 4.054 22 N -0.934 5.934 23 Si 0.967 3.033 24 H -0.271 1.271 25 H -0.287 1.287 26 H -0.290 1.290 27 C 0.141 3.859 28 C -0.118 4.118 29 C 0.119 3.881 30 H 0.058 0.942 31 H 0.046 0.954 32 H 0.096 0.904 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.052 0.948 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.113 0.887 39 H 0.092 0.908 40 H 0.105 0.895 41 H 0.060 0.940 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.067 0.933 45 H 0.040 0.960 46 H 0.076 0.924 47 H -0.004 1.004 48 H 0.057 0.943 49 H 0.250 0.750 50 H 0.015 0.985 51 H 0.045 0.955 52 H 0.070 0.930 53 H 0.043 0.957 54 H 0.077 0.923 55 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.988 -20.400 -21.915 30.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.028 4.028 3 O -0.315 6.315 4 C 0.013 3.987 5 H 0.130 0.870 6 C -0.228 4.228 7 C 0.293 3.707 8 O -0.459 6.459 9 N -0.338 5.338 10 C -0.027 4.027 11 C -0.168 4.168 12 C -0.155 4.155 13 C -0.100 4.100 14 H 0.073 0.927 15 C -0.081 4.081 16 C -0.157 4.157 17 C 0.048 3.952 18 N -0.337 5.337 19 C -0.391 4.391 20 H 0.079 0.921 21 C -0.248 4.248 22 N -0.581 5.581 23 Si 0.795 3.205 24 H -0.195 1.195 25 H -0.214 1.214 26 H -0.217 1.217 27 C 0.015 3.985 28 C -0.157 4.157 29 C -0.003 4.003 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.115 0.885 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.071 0.929 36 H 0.116 0.884 37 H 0.113 0.887 38 H 0.131 0.869 39 H 0.110 0.890 40 H 0.124 0.876 41 H 0.079 0.921 42 H 0.092 0.908 43 H 0.087 0.913 44 H 0.085 0.915 45 H 0.059 0.941 46 H 0.095 0.905 47 H 0.014 0.986 48 H 0.075 0.925 49 H 0.059 0.941 50 H 0.033 0.967 51 H 0.063 0.937 52 H 0.088 0.912 53 H 0.062 0.938 54 H 0.096 0.904 55 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.444 -19.800 -21.682 30.292 hybrid contribution 0.098 0.656 1.557 1.692 sum -7.346 -19.143 -20.126 28.731 Atomic orbital electron populations 1.21776 0.93385 1.03465 1.02313 1.22828 0.96195 0.82214 1.01591 1.88039 1.19550 1.28685 1.95200 1.22007 0.83329 0.95239 0.98135 0.87022 1.22397 1.03053 1.04389 0.92974 1.21175 0.82074 0.88575 0.78898 1.90691 1.51555 1.48703 1.54920 1.48180 1.05980 1.26300 1.53317 1.22240 0.89573 0.93615 0.97318 1.21867 1.00487 0.97454 0.97019 1.21645 0.96548 0.96608 1.00657 1.21398 0.97047 0.96256 0.95317 0.92680 1.20917 0.95853 0.95457 0.95828 1.22046 0.99150 0.97866 0.96608 1.20689 0.88530 0.88936 0.97089 1.44372 1.30871 1.54123 1.04306 1.19545 0.92647 1.39132 0.87756 0.92121 1.25752 0.95127 1.01371 1.02595 1.70179 0.97725 1.55755 1.34454 0.85207 0.77709 0.76936 0.80616 1.19525 1.21365 1.21742 1.21031 0.92396 0.94710 0.90317 1.21958 0.97535 0.97190 0.99036 1.21616 0.98993 0.87334 0.92383 0.92263 0.93460 0.88515 0.92436 0.90691 0.92867 0.88391 0.88735 0.86929 0.88975 0.87631 0.92126 0.90775 0.91318 0.91452 0.94112 0.90539 0.98599 0.92501 0.94070 0.96668 0.93659 0.91159 0.93845 0.90442 0.91561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 10.28 71.98 0.74 -1.26 16 2 C 0.05 0.65 6.47 71.98 0.47 1.11 16 3 O -0.40 -8.88 9.54 -130.11 -1.24 -10.12 16 4 C 0.07 1.26 2.29 29.85 0.07 1.33 16 5 H 0.11 1.23 7.06 -2.39 -0.02 1.21 16 6 C -0.17 -1.83 9.08 71.98 0.65 -1.17 16 7 C 0.50 12.95 7.08 87.66 0.62 13.57 16 8 O -0.58 -21.54 15.96 15.86 0.25 -21.29 16 9 N -0.60 -12.43 2.98 -819.73 -2.44 -14.87 16 10 C 0.09 1.02 5.09 86.22 0.44 1.46 16 11 C -0.13 -1.55 6.06 30.53 0.19 -1.36 16 12 C -0.12 -2.14 4.86 30.62 0.15 -1.99 16 13 C -0.08 -2.01 1.92 -10.71 -0.02 -2.03 16 14 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 15 C -0.06 -1.95 1.74 -10.77 -0.02 -1.97 16 16 C -0.12 -4.37 5.05 30.67 0.15 -4.22 16 17 C 0.17 8.52 5.32 86.36 0.46 8.97 16 18 N -0.61 -32.27 3.00 -699.11 -2.10 -34.37 16 19 C -0.26 -15.01 9.61 84.03 0.81 -14.20 16 20 H 0.06 3.46 7.87 -2.91 -0.02 3.44 16 21 C -0.05 -3.08 4.96 84.86 0.42 -2.66 16 22 N -0.93 -56.28 11.01 21.65 0.24 -56.04 16 23 Si 0.97 46.25 29.58 68.60 2.03 48.28 16 24 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 25 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 26 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 27 C 0.14 6.25 6.52 86.37 0.56 6.82 16 28 C -0.12 -4.29 5.05 30.67 0.15 -4.13 16 29 C 0.12 2.96 5.18 86.36 0.45 3.40 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.10 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.06 0.67 8.08 -2.39 -0.02 0.65 16 34 H 0.07 0.62 7.95 -2.39 -0.02 0.60 16 35 H 0.05 0.80 8.14 -2.39 -0.02 0.79 16 36 H 0.10 0.63 5.58 -2.39 -0.01 0.61 16 37 H 0.09 0.56 7.95 -2.38 -0.02 0.54 16 38 H 0.11 0.62 4.60 -2.39 -0.01 0.61 16 39 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.07 1.36 6.34 -2.39 -0.02 1.34 16 44 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 45 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.08 2.42 6.34 -2.38 -0.02 2.41 16 47 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 48 H 0.06 3.18 5.89 -2.39 -0.01 3.17 16 49 H 0.25 14.47 8.31 -92.70 -0.77 13.70 16 50 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 51 H 0.04 2.01 7.93 -2.39 -0.02 1.99 16 52 H 0.07 2.29 6.49 -2.39 -0.02 2.27 16 53 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 54 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 55 H 0.07 2.06 5.62 -2.39 -0.01 2.05 16 Total: -1.00 -78.09 408.09 3.87 -74.22 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: 0.85 Total: 12.53 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: 6.29 Total: 1.67 kcal Atomic # 7 Polarization: -100.98 SS G_CDS: -4.30 Total: -105.28 kcal Atomic # 8 Polarization: -30.42 SS G_CDS: -0.99 Total: -31.40 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -78.09 3.87 -74.22 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672172206.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.588 kcal (2) G-P(sol) polarization free energy of solvation -78.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds