Wall clock time and date at job start Tue Mar 31 2020 21:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42897 * 109.47059 * 2 1 4 4 C 1.42899 * 113.99891 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47580 * 30.00461 * 4 3 2 6 6 C 1.53006 * 109.47253 * 270.00221 * 4 3 2 7 7 C 1.50703 * 109.47286 * 150.00789 * 4 3 2 8 8 O 1.21281 * 119.99427 * 4.99809 * 7 4 3 9 9 N 1.34769 * 119.99938 * 185.00250 * 7 4 3 10 10 C 1.46930 * 120.63535 * 359.97369 * 9 7 4 11 11 C 1.53185 * 108.77551 * 126.41445 * 10 9 7 12 12 C 1.53108 * 109.33595 * 54.63723 * 11 10 9 13 13 C 1.53044 * 109.50029 * 298.65828 * 12 11 10 14 14 H 1.09003 * 109.49701 * 301.37725 * 13 12 11 15 15 C 1.52998 * 109.49771 * 181.31313 * 13 12 11 16 16 C 1.53042 * 109.46211 * 180.09190 * 15 13 12 17 17 C 1.53194 * 109.31419 * 178.59973 * 16 15 13 18 18 N 1.46931 * 108.76183 * 54.65097 * 17 16 15 19 19 C 1.36941 * 120.62572 * 126.40564 * 18 17 16 20 20 H 1.08000 * 120.00195 * 207.65975 * 19 18 17 21 21 C 1.38817 * 119.99929 * 27.65978 * 19 18 17 22 22 N 1.31623 * 119.99964 * 17.37418 * 21 19 18 23 23 Si 1.86796 * 119.99832 * 197.37467 * 21 19 18 24 24 H 1.48492 * 109.47357 * 0.02562 * 23 21 19 25 25 H 1.48509 * 109.47101 * 120.00346 * 23 21 19 26 26 H 1.48501 * 109.47444 * 239.99793 * 23 21 19 27 27 C 1.46918 * 118.74398 * 306.38615 * 18 17 16 28 28 C 1.53037 * 109.46197 * 60.03381 * 15 13 12 29 29 C 1.46927 * 120.62967 * 179.97438 * 9 7 4 30 30 H 1.08994 * 109.47170 * 299.99835 * 1 2 3 31 31 H 1.09006 * 109.46665 * 59.99634 * 1 2 3 32 32 H 1.08999 * 109.46835 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46687 * 240.00545 * 2 1 3 34 34 H 1.08999 * 109.47246 * 120.00684 * 2 1 3 35 35 H 1.08992 * 109.47134 * 300.00394 * 6 4 3 36 36 H 1.09005 * 109.46493 * 60.00041 * 6 4 3 37 37 H 1.08998 * 109.47168 * 179.97438 * 6 4 3 38 38 H 1.08997 * 109.58648 * 246.20049 * 10 9 7 39 39 H 1.08996 * 109.58289 * 6.62895 * 10 9 7 40 40 H 1.09005 * 109.50037 * 174.58992 * 11 10 9 41 41 H 1.09006 * 109.49648 * 294.65147 * 11 10 9 42 42 H 1.08990 * 109.50534 * 178.63264 * 12 11 10 43 43 H 1.08996 * 109.44568 * 58.64613 * 12 11 10 44 44 H 1.09006 * 109.46026 * 300.06316 * 15 13 12 45 45 H 1.08997 * 109.49630 * 298.56350 * 16 15 13 46 46 H 1.08998 * 109.49561 * 58.66156 * 16 15 13 47 47 H 1.09005 * 109.59705 * 294.87031 * 17 16 15 48 48 H 1.08987 * 109.58586 * 174.43483 * 17 16 15 49 49 H 0.97003 * 119.99735 * 179.97438 * 22 21 19 50 50 H 1.09003 * 109.58575 * 293.82162 * 27 18 17 51 51 H 1.08998 * 109.58948 * 173.39441 * 27 18 17 52 52 H 1.08997 * 109.49929 * 301.34212 * 28 15 13 53 53 H 1.09006 * 109.49666 * 61.43321 * 28 15 13 54 54 H 1.09000 * 109.58848 * 113.79859 * 29 9 7 55 55 H 1.09003 * 109.70144 * 353.44074 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8637 0.6015 -0.5130 6 6 3.9387 1.5005 1.4433 7 6 3.8348 2.7264 -0.7097 8 8 2.9865 3.5047 -1.0910 9 7 5.1387 2.9938 -0.9211 10 6 6.1780 2.0608 -0.4646 11 6 7.0826 1.7117 -1.6505 12 6 7.6250 3.0019 -2.2714 13 6 6.4598 3.8507 -2.7852 14 1 5.8916 3.2813 -3.5208 15 6 7.0037 5.1247 -3.4349 16 6 5.8378 5.9739 -3.9464 17 6 6.3842 7.2647 -4.5648 18 7 7.3724 6.9141 -5.5941 19 6 7.2576 7.4050 -6.8673 20 1 7.6623 6.8480 -7.6994 21 6 6.6211 8.6186 -7.0885 22 7 6.4336 9.4551 -6.0897 23 14 6.0305 9.0646 -8.8036 24 1 6.3592 7.9621 -9.7426 25 1 4.5604 9.2741 -8.7821 26 1 6.7017 10.3119 -9.2496 27 6 8.4862 6.0273 -5.2313 28 6 7.9162 4.7507 -4.6051 29 6 5.5481 4.2238 -1.6126 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 3.5061 2.3590 1.9569 36 1 3.6465 0.5846 1.9571 37 1 5.0254 1.5861 1.4438 38 1 6.7702 2.5296 0.3212 39 1 5.7114 1.1533 -0.0814 40 1 7.9139 1.0968 -1.3054 41 1 6.5086 1.1619 -2.3965 42 1 8.2884 2.7559 -3.1004 43 1 8.1781 3.5626 -1.5179 44 1 7.5718 5.6936 -2.6988 45 1 5.2841 5.4150 -4.7007 46 1 5.1756 6.2203 -3.1164 47 1 6.8603 7.8675 -3.7915 48 1 5.5679 7.8266 -5.0183 49 1 5.9892 10.3033 -6.2444 50 1 9.1337 6.5294 -4.5124 51 1 9.0567 5.7730 -6.1246 52 1 8.7335 4.1263 -4.2441 53 1 7.3427 4.2033 -5.3532 54 1 6.0889 4.8693 -0.9206 55 1 4.6672 4.7457 -1.9865 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672172208.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:59:52 Heat of formation + Delta-G solvation = -93.348883 kcal Electronic energy + Delta-G solvation = -31130.929307 eV Core-core repulsion = 27167.063710 eV Total energy + Delta-G solvation = -3963.865597 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.61876 -40.01610 -38.82863 -37.97842 -35.78671 -34.04550 -33.12623 -32.90072 -31.46482 -31.30533 -30.25984 -27.15626 -26.91776 -24.98885 -24.57840 -23.75577 -23.34629 -22.60954 -21.28379 -20.71569 -20.16426 -18.69849 -18.43602 -17.79075 -17.07978 -16.82283 -16.56526 -16.18569 -15.80290 -15.57223 -15.35259 -15.26793 -15.04778 -14.92457 -14.56633 -14.33703 -14.24032 -14.11467 -13.85652 -13.66917 -13.57174 -13.36416 -13.17964 -13.05984 -12.98623 -12.82423 -12.59159 -12.43414 -12.31046 -12.23883 -12.08080 -12.04048 -11.90455 -11.83017 -11.72156 -11.52929 -11.36541 -11.05200 -10.85848 -10.81479 -10.54747 -10.43603 -9.64462 -8.68667 -7.88729 -5.33554 1.42207 1.44541 1.51937 1.54904 1.71972 2.49017 2.81567 3.25183 3.41850 3.67820 3.73186 3.79580 3.83882 3.91355 3.97824 4.10404 4.18245 4.20095 4.23628 4.30852 4.37481 4.42611 4.47177 4.54201 4.56265 4.60714 4.63735 4.75698 4.76065 4.80987 4.83100 4.88388 4.90540 4.92966 5.00371 5.03162 5.07955 5.11663 5.17658 5.20510 5.25462 5.31342 5.36271 5.41382 5.43562 5.50132 5.54588 5.57567 5.65683 5.77937 6.11628 6.37956 6.41184 7.12583 7.13392 7.86615 8.37750 9.17402 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015629 B = 0.002506 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.092167 B =11168.635618 C =12284.045893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.048 3.952 3 O -0.397 6.397 4 C 0.075 3.925 5 H 0.114 0.886 6 C -0.171 4.171 7 C 0.501 3.499 8 O -0.583 6.583 9 N -0.603 5.603 10 C 0.092 3.908 11 C -0.130 4.130 12 C -0.115 4.115 13 C -0.081 4.081 14 H 0.054 0.946 15 C -0.061 4.061 16 C -0.124 4.124 17 C 0.179 3.821 18 N -0.612 5.612 19 C -0.260 4.260 20 H 0.066 0.934 21 C -0.056 4.056 22 N -0.936 5.936 23 Si 0.966 3.034 24 H -0.265 1.265 25 H -0.293 1.293 26 H -0.289 1.289 27 C 0.138 3.862 28 C -0.112 4.112 29 C 0.117 3.883 30 H 0.058 0.942 31 H 0.045 0.955 32 H 0.097 0.903 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.050 0.950 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.093 0.907 39 H 0.113 0.887 40 H 0.108 0.892 41 H 0.059 0.941 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.067 0.933 45 H 0.037 0.963 46 H 0.054 0.946 47 H -0.004 1.004 48 H 0.045 0.955 49 H 0.249 0.751 50 H 0.016 0.984 51 H 0.052 0.948 52 H 0.092 0.908 53 H 0.046 0.954 54 H 0.076 0.924 55 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.110 -26.408 18.389 32.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.028 4.028 3 O -0.316 6.316 4 C 0.014 3.986 5 H 0.132 0.868 6 C -0.228 4.228 7 C 0.290 3.710 8 O -0.462 6.462 9 N -0.336 5.336 10 C -0.029 4.029 11 C -0.168 4.168 12 C -0.152 4.152 13 C -0.100 4.100 14 H 0.072 0.928 15 C -0.081 4.081 16 C -0.163 4.163 17 C 0.053 3.947 18 N -0.336 5.336 19 C -0.390 4.390 20 H 0.084 0.916 21 C -0.251 4.251 22 N -0.583 5.583 23 Si 0.794 3.206 24 H -0.190 1.190 25 H -0.220 1.220 26 H -0.216 1.216 27 C 0.013 3.987 28 C -0.150 4.150 29 C -0.006 4.006 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.116 0.884 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.069 0.931 36 H 0.112 0.888 37 H 0.119 0.881 38 H 0.111 0.889 39 H 0.131 0.869 40 H 0.126 0.874 41 H 0.078 0.922 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.086 0.914 45 H 0.056 0.944 46 H 0.073 0.927 47 H 0.014 0.986 48 H 0.064 0.936 49 H 0.058 0.942 50 H 0.034 0.966 51 H 0.070 0.930 52 H 0.110 0.890 53 H 0.065 0.935 54 H 0.094 0.906 55 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.517 -25.718 18.182 31.500 hybrid contribution -0.637 1.223 -1.273 1.877 sum -1.154 -24.495 16.909 29.787 Atomic orbital electron populations 1.21782 0.93457 1.03478 1.02257 1.22834 0.96154 0.82182 1.01638 1.88044 1.19614 1.28760 1.95196 1.21999 0.83310 0.95168 0.98107 0.86805 1.22416 1.03328 1.04161 0.92909 1.21253 0.82251 0.88434 0.79087 1.90708 1.51510 1.51182 1.52826 1.48178 1.05471 1.22806 1.57181 1.22374 0.89349 0.93522 0.97650 1.21958 1.00067 0.97430 0.97357 1.21659 0.96343 0.95934 1.01259 1.21395 0.96885 0.96074 0.95654 0.92779 1.20923 0.95478 0.94932 0.96725 1.22072 0.97859 0.97643 0.98736 1.20536 0.91974 0.92871 0.89332 1.44353 1.25686 1.55458 1.08130 1.19558 1.34187 1.00141 0.85108 0.91600 1.25820 1.03112 0.95362 1.00800 1.70204 1.46779 1.08874 1.32414 0.85230 0.77347 0.77774 0.80279 1.18951 1.21996 1.21610 1.21112 0.89414 0.90792 0.97360 1.21939 0.99179 0.97170 0.96752 1.21599 0.98547 0.86208 0.94225 0.92318 0.93559 0.88425 0.92376 0.90593 0.93113 0.88784 0.88054 0.88891 0.86934 0.87353 0.92179 0.90485 0.90625 0.91432 0.94418 0.92698 0.98600 0.93647 0.94223 0.96641 0.92970 0.88963 0.93538 0.90553 0.92300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 10.28 71.98 0.74 -1.37 16 2 C 0.05 0.68 6.47 71.98 0.47 1.14 16 3 O -0.40 -9.29 9.53 -129.99 -1.24 -10.52 16 4 C 0.07 1.34 2.30 29.85 0.07 1.41 16 5 H 0.11 1.28 7.08 -2.39 -0.02 1.26 16 6 C -0.17 -1.91 9.10 71.98 0.66 -1.25 16 7 C 0.50 13.57 7.12 87.66 0.62 14.19 16 8 O -0.58 -23.03 15.92 15.96 0.25 -22.78 16 9 N -0.60 -12.95 2.97 -818.99 -2.43 -15.39 16 10 C 0.09 0.98 4.97 86.36 0.43 1.41 16 11 C -0.13 -1.39 6.08 30.69 0.19 -1.20 16 12 C -0.11 -1.86 4.86 30.64 0.15 -1.72 16 13 C -0.08 -2.01 1.92 -10.73 -0.02 -2.03 16 14 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 15 C -0.06 -1.95 1.74 -10.77 -0.02 -1.96 16 16 C -0.12 -5.09 5.05 30.67 0.15 -4.93 16 17 C 0.18 9.22 5.31 86.36 0.46 9.68 16 18 N -0.61 -32.19 2.99 -699.10 -2.09 -34.29 16 19 C -0.26 -14.93 9.59 84.03 0.81 -14.13 16 20 H 0.07 3.68 7.89 -2.91 -0.02 3.66 16 21 C -0.06 -3.28 4.91 84.86 0.42 -2.86 16 22 N -0.94 -58.14 11.19 21.65 0.24 -57.89 16 23 Si 0.97 46.98 29.59 68.60 2.03 49.01 16 24 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 25 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 26 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 27 C 0.14 5.77 6.52 86.36 0.56 6.34 16 28 C -0.11 -3.59 5.05 30.67 0.15 -3.44 16 29 C 0.12 3.10 5.19 86.35 0.45 3.55 16 30 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 32 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.06 0.70 8.09 -2.39 -0.02 0.68 16 34 H 0.08 0.65 7.87 -2.39 -0.02 0.63 16 35 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.09 0.61 7.87 -2.38 -0.02 0.59 16 37 H 0.10 0.64 5.41 -2.39 -0.01 0.62 16 38 H 0.09 0.70 8.14 -2.39 -0.02 0.69 16 39 H 0.11 0.59 4.66 -2.39 -0.01 0.58 16 40 H 0.11 0.55 8.14 -2.38 -0.02 0.53 16 41 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 42 H 0.08 1.23 6.33 -2.39 -0.02 1.21 16 43 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 45 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.05 2.16 6.49 -2.39 -0.02 2.15 16 47 H 0.00 -0.22 8.14 -2.38 -0.02 -0.24 16 48 H 0.05 2.69 6.03 -2.39 -0.01 2.67 16 49 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 50 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 51 H 0.05 2.13 7.93 -2.39 -0.02 2.11 16 52 H 0.09 2.26 6.33 -2.39 -0.02 2.24 16 53 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 54 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 55 H 0.06 2.04 5.59 -2.39 -0.01 2.03 16 Total: -1.00 -81.34 407.97 3.89 -77.45 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: 0.85 Total: 11.58 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: 6.28 Total: 2.83 kcal Atomic # 7 Polarization: -103.28 SS G_CDS: -4.29 Total: -107.57 kcal Atomic # 8 Polarization: -32.32 SS G_CDS: -0.98 Total: -33.30 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.01 kcal Total: -81.34 3.89 -77.45 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672172208.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.896 kcal (2) G-P(sol) polarization free energy of solvation -81.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds