Wall clock time and date at job start Tue Mar 31 2020 22:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 114.00145 * 2 1 4 4 C 1.52999 * 109.46815 * 179.97438 * 3 2 1 5 5 C 1.52998 * 115.55135 * 296.25173 * 4 3 2 6 6 C 1.50692 * 109.47499 * 279.47794 * 5 4 3 7 7 O 1.21279 * 120.00072 * 5.84041 * 6 5 4 8 8 N 1.34772 * 120.00221 * 185.84614 * 6 5 4 9 9 C 1.46505 * 120.00161 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47057 * 179.97438 * 9 8 6 11 11 H 1.09001 * 109.47526 * 305.00331 * 10 9 8 12 12 C 1.53000 * 109.47387 * 65.00369 * 10 9 8 13 13 C 1.52998 * 109.47387 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.46844 * 299.99562 * 13 12 10 15 15 H 1.08996 * 109.47273 * 299.99768 * 14 13 12 16 16 C 1.52998 * 109.46844 * 179.97438 * 14 13 12 17 17 N 1.46506 * 109.47299 * 65.00434 * 16 14 13 18 18 C 1.36933 * 120.00228 * 179.97438 * 17 16 14 19 19 H 1.07996 * 120.00174 * 359.97438 * 18 17 16 20 20 C 1.38813 * 120.00117 * 180.02562 * 18 17 16 21 21 N 1.31617 * 120.00242 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 119.99788 * 359.97438 * 20 18 17 23 23 H 1.48494 * 109.47250 * 270.00303 * 22 20 18 24 24 H 1.48497 * 109.47084 * 30.00235 * 22 20 18 25 25 H 1.48505 * 109.47190 * 150.00169 * 22 20 18 26 26 C 1.53001 * 109.47088 * 60.00509 * 14 13 12 27 27 C 1.53000 * 109.47151 * 185.00153 * 10 9 8 28 28 C 1.53001 * 117.51537 * 81.95857 * 4 3 2 29 29 C 1.53000 * 117.49511 * 150.58581 * 4 3 2 30 30 H 1.09000 * 109.47300 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46963 * 300.00272 * 1 2 3 32 32 H 1.08996 * 109.46902 * 59.99983 * 1 2 3 33 33 H 1.09001 * 109.46956 * 60.00123 * 3 2 1 34 34 H 1.08997 * 109.47266 * 300.00017 * 3 2 1 35 35 H 1.09006 * 109.46794 * 159.47785 * 5 4 3 36 36 H 1.09003 * 109.46886 * 39.48108 * 5 4 3 37 37 H 0.97000 * 120.00149 * 359.97438 * 8 6 5 38 38 H 1.09003 * 109.46597 * 60.00282 * 9 8 6 39 39 H 1.08997 * 109.47136 * 299.99983 * 9 8 6 40 40 H 1.09004 * 109.46946 * 300.00038 * 12 10 9 41 41 H 1.09005 * 109.47311 * 59.99577 * 12 10 9 42 42 H 1.09004 * 109.46737 * 180.02562 * 13 12 10 43 43 H 1.08993 * 109.47282 * 59.99929 * 13 12 10 44 44 H 1.08998 * 109.47397 * 305.00627 * 16 14 13 45 45 H 1.09000 * 109.47452 * 184.99904 * 16 14 13 46 46 H 0.97003 * 119.99662 * 359.97438 * 17 16 14 47 47 H 0.97002 * 120.00116 * 179.97438 * 21 20 18 48 48 H 1.09005 * 109.46920 * 59.99242 * 26 14 13 49 49 H 1.08992 * 109.46888 * 179.97438 * 26 14 13 50 50 H 1.09004 * 109.47031 * 60.00003 * 27 10 9 51 51 H 1.09001 * 109.47050 * 300.00469 * 27 10 9 52 52 H 1.08999 * 117.49709 * 214.96248 * 28 4 3 53 53 H 1.08993 * 117.50173 * 359.97438 * 28 4 3 54 54 H 1.09001 * 117.49833 * 359.97438 * 29 4 3 55 55 H 1.09007 * 117.49880 * 144.99740 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 4.1446 0.5239 1.2390 6 6 4.2297 1.5322 2.3557 7 8 3.7460 2.6354 2.2148 8 7 4.8435 1.2081 3.5109 9 6 4.9267 2.1886 4.5964 10 6 5.6664 1.5717 5.7852 11 1 5.1763 0.6424 6.0755 12 6 7.1157 1.2820 5.3895 13 6 7.8551 0.6645 6.5781 14 6 7.8335 1.6414 7.7555 15 1 8.3238 2.5707 7.4656 16 6 8.5724 1.0237 8.9443 17 7 9.9880 0.8561 8.6058 18 6 10.8520 0.3184 9.5220 19 1 10.4901 0.0182 10.4943 20 6 12.1933 0.1600 9.2015 21 7 13.0239 -0.3564 10.0823 22 14 12.8195 0.6798 7.5201 23 1 12.7155 -0.4634 6.5780 24 1 12.0022 1.8125 7.0160 25 1 14.2386 1.1035 7.6295 26 6 6.3842 1.9311 8.1512 27 6 5.6447 2.5490 6.9621 28 6 4.2257 0.9392 -1.3426 29 6 4.3334 2.3071 -0.6658 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.6887 1.8463 0.8900 34 1 1.6887 1.8464 -0.8899 35 1 5.1441 0.1593 1.0017 36 1 3.5175 -0.3114 1.5507 37 1 5.2301 0.3257 3.6238 38 1 3.9213 2.4761 4.9040 39 1 5.4666 3.0696 4.2495 40 1 7.1311 0.5857 4.5510 41 1 7.6058 2.2113 5.0991 42 1 8.8878 0.4586 6.2963 43 1 7.3650 -0.2648 6.8680 44 1 8.1372 0.0521 9.1776 45 1 8.4812 1.6801 9.8097 46 1 10.3131 1.1260 7.7327 47 1 13.9611 -0.4674 9.8582 48 1 5.8940 1.0017 8.4411 49 1 6.3689 2.6267 8.9902 50 1 4.6122 2.7554 7.2440 51 1 6.1347 3.4784 6.6718 52 1 5.1137 0.3072 -1.3441 53 1 3.5932 0.8635 -2.2270 54 1 3.7716 3.1315 -1.1050 55 1 5.2923 2.5750 -0.2220 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672364553.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:50 Heat of formation + Delta-G solvation = -96.491941 kcal Electronic energy + Delta-G solvation = -29468.313189 eV Core-core repulsion = 25504.311299 eV Total energy + Delta-G solvation = -3964.001890 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.12989 -40.08356 -39.16287 -37.57280 -36.96952 -35.52779 -33.78386 -32.21197 -31.62582 -30.57169 -28.99371 -27.90783 -26.41040 -25.47136 -24.03806 -23.36118 -23.18111 -21.73269 -21.63714 -20.73779 -20.08658 -19.62987 -17.97434 -17.36272 -17.03630 -16.95452 -16.69159 -16.53552 -16.35112 -15.97633 -15.75324 -15.28562 -15.20862 -15.04570 -14.71246 -14.66809 -14.43978 -14.42591 -14.04351 -13.72369 -13.44056 -13.28415 -13.02939 -12.95559 -12.93497 -12.63201 -12.54166 -12.37243 -12.34090 -12.13146 -12.03440 -11.95792 -11.85085 -11.79028 -11.32915 -11.31622 -11.11201 -11.03192 -10.95167 -10.85083 -10.71318 -10.44187 -10.00535 -9.28602 -8.03698 -5.36451 1.35631 1.39396 1.46888 1.72090 2.19229 2.47109 2.61730 3.12390 3.27471 3.58983 3.67030 3.70207 3.77597 3.83022 3.84432 3.96007 3.99779 4.18621 4.21300 4.32398 4.34680 4.38325 4.48293 4.54577 4.56126 4.58188 4.58748 4.62658 4.66430 4.74102 4.78747 4.79768 4.83791 4.86529 4.93021 4.94969 5.03391 5.04895 5.09458 5.12414 5.20860 5.22131 5.23960 5.30908 5.33859 5.41647 5.51480 5.56523 5.66343 5.75285 6.19091 6.20886 6.61504 7.07679 7.32423 7.84920 8.04472 9.18056 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.017405 B = 0.001876 C = 0.001771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.333031 B =14920.870960 C =15805.497417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.405 6.405 3 C 0.104 3.896 4 C -0.123 4.123 5 C -0.098 4.098 6 C 0.510 3.490 7 O -0.575 6.575 8 N -0.722 5.722 9 C 0.131 3.869 10 C -0.087 4.087 11 H 0.088 0.912 12 C -0.107 4.107 13 C -0.110 4.110 14 C -0.089 4.089 15 H 0.062 0.938 16 C 0.156 3.844 17 N -0.757 5.757 18 C -0.236 4.236 19 H 0.054 0.946 20 C -0.065 4.065 21 N -0.984 5.984 22 Si 0.955 3.045 23 H -0.274 1.274 24 H -0.254 1.254 25 H -0.295 1.295 26 C -0.103 4.103 27 C -0.105 4.105 28 C -0.153 4.153 29 C -0.156 4.156 30 H 0.100 0.900 31 H 0.041 0.959 32 H 0.049 0.951 33 H 0.043 0.957 34 H 0.055 0.945 35 H 0.114 0.886 36 H 0.111 0.889 37 H 0.413 0.587 38 H 0.061 0.939 39 H 0.055 0.945 40 H 0.074 0.926 41 H 0.057 0.943 42 H 0.043 0.957 43 H 0.065 0.935 44 H 0.023 0.977 45 H 0.017 0.983 46 H 0.366 0.634 47 H 0.258 0.742 48 H 0.069 0.931 49 H 0.065 0.935 50 H 0.079 0.921 51 H 0.062 0.938 52 H 0.109 0.891 53 H 0.102 0.898 54 H 0.094 0.906 55 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.838 3.014 -24.439 36.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.324 6.324 3 C 0.027 3.973 4 C -0.124 4.124 5 C -0.138 4.138 6 C 0.297 3.703 7 O -0.454 6.454 8 N -0.375 5.375 9 C 0.007 3.993 10 C -0.105 4.105 11 H 0.106 0.894 12 C -0.145 4.145 13 C -0.147 4.147 14 C -0.108 4.108 15 H 0.081 0.919 16 C 0.030 3.970 17 N -0.402 5.402 18 C -0.367 4.367 19 H 0.072 0.928 20 C -0.257 4.257 21 N -0.635 5.635 22 Si 0.782 3.218 23 H -0.200 1.200 24 H -0.178 1.178 25 H -0.222 1.222 26 C -0.142 4.142 27 C -0.143 4.143 28 C -0.190 4.190 29 C -0.194 4.194 30 H 0.118 0.882 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.132 0.868 36 H 0.129 0.871 37 H 0.249 0.751 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.093 0.907 41 H 0.076 0.924 42 H 0.062 0.938 43 H 0.084 0.916 44 H 0.041 0.959 45 H 0.036 0.964 46 H 0.199 0.801 47 H 0.067 0.933 48 H 0.088 0.912 49 H 0.083 0.917 50 H 0.097 0.903 51 H 0.081 0.919 52 H 0.128 0.872 53 H 0.120 0.880 54 H 0.112 0.888 55 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -27.036 3.553 -24.317 36.537 hybrid contribution 0.990 0.092 -0.114 1.001 sum -26.046 3.645 -24.431 35.896 Atomic orbital electron populations 1.22902 0.79847 1.03836 1.00483 1.87820 1.20939 1.28174 1.95498 1.21886 0.91072 0.84252 1.00070 1.20976 0.92395 1.04873 0.94122 1.21183 1.04096 0.97308 0.91218 1.21072 0.76864 0.88606 0.83740 1.90671 1.48233 1.24602 1.81913 1.46039 1.58568 1.18181 1.14732 1.21296 1.00076 0.91519 0.86382 1.21321 0.95337 0.99935 0.93932 0.89391 1.21569 0.94735 1.00928 0.97220 1.21505 0.99847 0.98455 0.94917 1.21298 0.96481 0.98470 0.94559 0.91940 1.20882 0.82648 0.97272 0.96219 1.42744 1.05767 1.76455 1.15280 1.19070 0.90071 1.31815 0.95761 0.92814 1.25529 0.96220 1.01903 1.02021 1.69889 1.04108 1.52626 1.36864 0.85400 0.77246 0.78959 0.80154 1.20033 1.17839 1.22192 1.21451 0.93192 1.01410 0.98099 1.21462 1.00993 0.98031 0.93801 1.23188 1.02561 0.98716 0.94496 1.22891 1.01098 0.92462 1.02899 0.88209 0.94038 0.93243 0.93898 0.92710 0.86769 0.87075 0.75072 0.92026 0.92666 0.90727 0.92420 0.93773 0.91590 0.95913 0.96449 0.80085 0.93333 0.91236 0.91656 0.90288 0.91887 0.87241 0.88003 0.88779 0.89099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.53 16 2 O -0.40 -6.72 10.39 -148.98 -1.55 -8.27 16 3 C 0.10 1.70 5.71 71.98 0.41 2.11 16 4 C -0.12 -1.87 1.27 -52.18 -0.07 -1.93 16 5 C -0.10 -1.31 5.62 29.84 0.17 -1.14 16 6 C 0.51 9.25 7.68 87.66 0.67 9.92 16 7 O -0.57 -14.79 14.95 -3.02 -0.05 -14.84 16 8 N -0.72 -10.41 5.28 -463.07 -2.45 -12.86 16 9 C 0.13 2.11 5.06 86.38 0.44 2.55 16 10 C -0.09 -1.30 2.22 -10.79 -0.02 -1.33 16 11 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 12 C -0.11 -1.94 5.08 30.59 0.16 -1.78 16 13 C -0.11 -2.73 5.08 30.59 0.16 -2.57 16 14 C -0.09 -2.46 2.23 -10.79 -0.02 -2.48 16 15 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 16 C 0.16 5.90 5.65 86.38 0.49 6.38 16 17 N -0.76 -35.77 5.13 -343.45 -1.76 -37.53 16 18 C -0.24 -13.76 10.47 84.03 0.88 -12.88 16 19 H 0.05 3.44 8.06 -2.91 -0.02 3.41 16 20 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 21 N -0.98 -63.82 13.97 21.65 0.30 -63.51 16 22 Si 0.96 45.79 27.74 68.60 1.90 47.69 16 23 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 24 H -0.25 -11.02 6.52 99.48 0.65 -10.37 16 25 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 26 C -0.10 -2.16 5.20 30.61 0.16 -2.00 16 27 C -0.10 -1.72 5.21 30.61 0.16 -1.56 16 28 C -0.15 -1.80 9.90 30.60 0.30 -1.50 16 29 C -0.16 -2.33 9.16 30.59 0.28 -2.05 16 30 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.04 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.04 0.85 7.59 -2.39 -0.02 0.83 16 34 H 0.05 0.80 8.10 -2.39 -0.02 0.78 16 35 H 0.11 1.03 7.94 -2.38 -0.02 1.01 16 36 H 0.11 1.36 7.84 -2.39 -0.02 1.34 16 37 H 0.41 4.00 7.65 -92.71 -0.71 3.29 16 38 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.07 1.12 7.18 -2.38 -0.02 1.10 16 41 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 42 H 0.04 1.30 7.18 -2.38 -0.02 1.29 16 43 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 46 H 0.37 16.43 4.71 -92.71 -0.44 15.99 16 47 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 48 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 49 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 50 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 51 H 0.06 1.08 8.14 -2.39 -0.02 1.07 16 52 H 0.11 1.02 8.08 -2.39 -0.02 1.00 16 53 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 54 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 55 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 Total: -1.00 -74.57 429.46 1.92 -72.66 By element: Atomic # 1 Polarization: 29.18 SS G_CDS: -0.36 Total: 28.82 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: 5.87 Total: -12.17 kcal Atomic # 7 Polarization: -109.99 SS G_CDS: -3.91 Total: -113.90 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -1.59 Total: -23.10 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 1.90 Total: 47.69 kcal Total: -74.57 1.92 -72.66 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672364553.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.836 kcal (2) G-P(sol) polarization free energy of solvation -74.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds