Wall clock time and date at job start Tue Mar 31 2020 22:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42904 * 113.99464 * 2 1 4 4 H 1.08995 * 109.47415 * 34.33822 * 3 2 1 5 5 C 1.50698 * 109.47381 * 274.32938 * 3 2 1 6 6 O 1.21278 * 120.00153 * 345.36835 * 5 3 2 7 7 N 1.34775 * 119.99668 * 165.35661 * 5 3 2 8 8 C 1.46929 * 120.63484 * 5.94365 * 7 5 3 9 9 C 1.53186 * 108.89336 * 126.46091 * 8 7 5 10 10 C 1.53041 * 109.31614 * 54.56547 * 9 8 7 11 11 C 1.53043 * 109.53462 * 298.63572 * 10 9 8 12 12 C 1.46967 * 120.65394 * 185.75807 * 7 5 3 13 13 H 1.08999 * 109.46793 * 113.74580 * 12 7 5 14 14 C 1.53006 * 109.70848 * 353.46926 * 12 7 5 15 15 N 1.46496 * 109.47318 * 68.89786 * 14 12 7 16 16 C 1.36940 * 119.99979 * 183.71461 * 15 14 12 17 17 H 1.08006 * 119.99995 * 5.15582 * 16 15 14 18 18 C 1.38813 * 119.99962 * 185.16310 * 16 15 14 19 19 N 1.31614 * 119.99800 * 184.86843 * 18 16 15 20 20 Si 1.86792 * 119.99929 * 4.86842 * 18 16 15 21 21 H 1.48504 * 109.47193 * 94.37930 * 20 18 16 22 22 H 1.48500 * 109.47281 * 214.37718 * 20 18 16 23 23 H 1.48499 * 109.47640 * 334.37952 * 20 18 16 24 24 C 1.53004 * 109.46640 * 154.33366 * 3 2 1 25 25 C 1.53002 * 109.46971 * 54.18563 * 24 3 2 26 26 C 1.53004 * 109.46971 * 179.97438 * 25 24 3 27 27 C 1.52995 * 109.47093 * 60.00373 * 26 25 24 28 28 C 1.53002 * 109.46908 * 299.99666 * 27 26 25 29 29 C 1.53001 * 109.47005 * 60.00632 * 28 27 26 30 30 H 1.09000 * 109.47209 * 304.97076 * 1 2 3 31 31 H 1.09001 * 109.47363 * 64.96833 * 1 2 3 32 32 H 1.08999 * 109.46959 * 184.96919 * 1 2 3 33 33 H 1.09004 * 109.58096 * 6.60144 * 8 7 5 34 34 H 1.08992 * 109.58432 * 246.32393 * 8 7 5 35 35 H 1.09004 * 109.49564 * 174.51552 * 9 8 7 36 36 H 1.09006 * 109.50187 * 294.61260 * 9 8 7 37 37 H 1.09004 * 109.45946 * 58.64929 * 10 9 8 38 38 H 1.08997 * 109.46545 * 178.62571 * 10 9 8 39 39 H 1.09002 * 109.49198 * 181.31409 * 11 10 9 40 40 H 1.08999 * 109.49656 * 301.40665 * 11 10 9 41 41 H 1.08995 * 109.46996 * 188.89867 * 14 12 7 42 42 H 1.09004 * 109.46923 * 308.89441 * 14 12 7 43 43 H 0.96996 * 119.99893 * 3.70380 * 15 14 12 44 44 H 0.96999 * 120.00283 * 180.02562 * 19 18 16 45 45 H 1.08995 * 109.47008 * 174.18513 * 24 3 2 46 46 H 1.08995 * 109.47214 * 299.99825 * 25 24 3 47 47 H 1.09004 * 109.46850 * 60.00069 * 25 24 3 48 48 H 1.08995 * 109.47008 * 299.99951 * 26 25 24 49 49 H 1.08999 * 109.47141 * 180.02562 * 26 25 24 50 50 H 1.09003 * 109.46992 * 180.02562 * 27 26 25 51 51 H 1.08995 * 109.47538 * 59.99902 * 27 26 25 52 52 H 1.09002 * 109.47070 * 300.00079 * 28 27 26 53 53 H 1.09004 * 109.46850 * 180.02562 * 28 27 26 54 54 H 1.08999 * 109.46682 * 180.02562 * 29 28 27 55 55 H 1.08995 * 109.47296 * 59.99853 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3828 1.9826 0.5796 5 6 2.1165 1.8081 -1.4167 6 8 1.9880 1.0379 -2.3447 7 7 2.3541 3.1136 -1.6525 8 6 2.6406 4.0346 -0.5440 9 6 3.9529 4.7690 -0.8358 10 6 3.8612 5.4444 -2.2061 11 6 3.6516 4.3817 -3.2874 12 6 2.3359 3.6430 -3.0234 13 1 1.5001 4.3337 -3.1350 14 6 2.1856 2.4911 -4.0193 15 7 0.8448 1.9134 -3.8991 16 6 0.5038 0.8142 -4.6413 17 1 1.2471 0.3231 -5.2519 18 6 -0.7972 0.3313 -4.6090 19 7 -1.1028 -0.7795 -5.2453 20 14 -2.1142 1.2580 -3.6624 21 1 -2.8382 2.1692 -4.5848 22 1 -3.0719 0.2899 -3.0702 23 1 -1.4796 2.0518 -2.5796 24 6 3.4054 1.2426 0.6248 25 6 4.2413 0.1854 -0.0994 26 6 5.6368 0.1230 0.5250 27 6 5.5173 -0.2472 2.0046 28 6 4.6813 0.8100 2.7289 29 6 3.2859 0.8724 2.1046 30 1 -0.3633 0.5890 0.8421 31 1 -0.3634 0.4348 -0.9311 32 1 -0.3633 -1.0238 0.0890 33 1 2.7358 3.4708 0.3840 34 1 1.8301 4.7574 -0.4509 35 1 4.1254 5.5242 -0.0689 36 1 4.7769 4.0554 -0.8364 37 1 3.0217 6.1397 -2.2128 38 1 4.7846 5.9880 -2.4056 39 1 3.6097 4.8613 -4.2653 40 1 4.4784 3.6718 -3.2648 41 1 2.3304 2.8657 -5.0325 42 1 2.9316 1.7258 -3.8048 43 1 0.1986 2.3094 -3.2938 44 1 -2.0120 -1.1168 -5.2231 45 1 3.8893 2.2148 0.5318 46 1 3.7574 -0.7868 -0.0064 47 1 4.3268 0.4494 -1.1536 48 1 6.1204 1.0952 0.4315 49 1 6.2324 -0.6299 0.0087 50 1 6.5114 -0.2913 2.4496 51 1 5.0336 -1.2195 2.0981 52 1 5.1651 1.7823 2.6355 53 1 4.5966 0.5465 3.7832 54 1 2.6906 1.6259 2.6203 55 1 2.8022 -0.0999 2.1980 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674415709.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:03 Heat of formation + Delta-G solvation = -68.119495 kcal Electronic energy + Delta-G solvation = -33655.895694 eV Core-core repulsion = 29693.124125 eV Total energy + Delta-G solvation = -3962.771569 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.89247 -39.82392 -38.43633 -37.61958 -36.46255 -34.20544 -33.69280 -32.60155 -31.85881 -31.61246 -28.46819 -27.81572 -26.89820 -25.60378 -24.05291 -23.55076 -23.09745 -22.52052 -21.53634 -20.59452 -20.24718 -19.35479 -17.97546 -17.58733 -17.05066 -16.62036 -16.56522 -15.96411 -15.85311 -15.70584 -15.51609 -15.29284 -15.05317 -14.88648 -14.74834 -14.59227 -14.45748 -14.17008 -13.93908 -13.85265 -13.66924 -13.42456 -13.08530 -12.97641 -12.91445 -12.84855 -12.68508 -12.28010 -12.15998 -12.07457 -11.95664 -11.92280 -11.83922 -11.72557 -11.48654 -11.42831 -11.23466 -11.16377 -11.06184 -10.94831 -10.88239 -9.55390 -9.51555 -8.88213 -7.94892 -5.18460 1.23224 1.31768 1.37501 1.92780 2.06382 2.49046 2.78823 3.34829 3.49365 3.64013 3.67547 3.79516 3.87083 3.92194 4.02037 4.09960 4.11706 4.26961 4.28782 4.32047 4.35089 4.37724 4.38432 4.47204 4.49758 4.55103 4.61773 4.65642 4.68065 4.74702 4.76142 4.80158 4.86461 4.97962 5.03541 5.04414 5.13485 5.16167 5.18720 5.24989 5.28825 5.31937 5.32230 5.35074 5.39681 5.46064 5.53047 5.64764 5.79064 5.82974 6.06335 6.27349 6.66241 7.15816 7.59642 7.93423 8.13890 9.29557 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010739 B = 0.005262 C = 0.004152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2606.742996 B = 5320.338074 C = 6742.518260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.371 6.371 3 C 0.077 3.923 4 H 0.095 0.905 5 C 0.448 3.552 6 O -0.493 6.493 7 N -0.615 5.615 8 C 0.094 3.906 9 C -0.128 4.128 10 C -0.112 4.112 11 C -0.120 4.120 12 C 0.144 3.856 13 H 0.069 0.931 14 C 0.167 3.833 15 N -0.721 5.721 16 C -0.183 4.183 17 H 0.036 0.964 18 C -0.076 4.076 19 N -0.996 5.996 20 Si 0.958 3.042 21 H -0.281 1.281 22 H -0.295 1.295 23 H -0.264 1.264 24 C -0.067 4.067 25 C -0.105 4.105 26 C -0.112 4.112 27 C -0.119 4.119 28 C -0.111 4.111 29 C -0.109 4.109 30 H 0.073 0.927 31 H 0.007 0.993 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.077 0.923 35 H 0.105 0.895 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.056 0.944 41 H 0.012 0.988 42 H 0.025 0.975 43 H 0.356 0.644 44 H 0.252 0.748 45 H 0.107 0.893 46 H 0.043 0.957 47 H 0.027 0.973 48 H 0.073 0.927 49 H 0.052 0.948 50 H 0.075 0.925 51 H 0.049 0.951 52 H 0.077 0.923 53 H 0.075 0.925 54 H 0.082 0.918 55 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.161 15.549 22.203 30.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.288 6.288 3 C 0.016 3.984 4 H 0.113 0.887 5 C 0.233 3.767 6 O -0.364 6.364 7 N -0.354 5.354 8 C -0.028 4.028 9 C -0.166 4.166 10 C -0.149 4.149 11 C -0.159 4.159 12 C 0.040 3.960 13 H 0.087 0.913 14 C 0.041 3.959 15 N -0.365 5.365 16 C -0.314 4.314 17 H 0.054 0.946 18 C -0.265 4.265 19 N -0.650 5.650 20 Si 0.787 3.213 21 H -0.208 1.208 22 H -0.222 1.222 23 H -0.190 1.190 24 C -0.085 4.085 25 C -0.143 4.143 26 C -0.150 4.150 27 C -0.156 4.156 28 C -0.149 4.149 29 C -0.147 4.147 30 H 0.091 0.909 31 H 0.026 0.974 32 H 0.108 0.892 33 H 0.117 0.883 34 H 0.095 0.905 35 H 0.123 0.877 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.101 0.899 39 H 0.098 0.902 40 H 0.075 0.925 41 H 0.030 0.970 42 H 0.043 0.957 43 H 0.189 0.811 44 H 0.061 0.939 45 H 0.125 0.875 46 H 0.062 0.938 47 H 0.046 0.954 48 H 0.091 0.909 49 H 0.071 0.929 50 H 0.094 0.906 51 H 0.068 0.932 52 H 0.096 0.904 53 H 0.094 0.906 54 H 0.100 0.900 55 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 14.244 14.768 21.553 29.757 hybrid contribution -1.556 -0.388 -0.574 1.703 sum 12.688 14.379 20.979 28.423 Atomic orbital electron populations 1.22847 0.80809 1.03487 0.99402 1.87946 1.19971 1.26576 1.94301 1.22385 0.98052 0.85837 0.92126 0.88707 1.21902 0.78904 0.83004 0.92860 1.91154 1.45169 1.56048 1.44074 1.48163 1.72101 1.07831 1.07352 1.22139 0.98603 0.92926 0.89093 1.21911 0.96292 1.00162 0.98226 1.21486 1.03088 0.96722 0.93616 1.21849 0.95081 0.98233 1.00712 1.21392 0.98948 0.94287 0.81364 0.91344 1.20869 0.87360 0.92954 0.94757 1.42508 1.11608 1.33150 1.49270 1.18828 0.93490 1.02737 1.16389 0.94567 1.25337 0.99444 0.98950 1.02810 1.69914 1.19111 1.24510 1.51426 0.85351 0.79339 0.77816 0.78746 1.20817 1.22210 1.18987 1.21343 0.90406 1.00648 0.96103 1.21348 0.96437 0.98874 0.97611 1.21499 0.95136 1.01911 0.96429 1.21543 1.00659 0.98952 0.94458 1.21505 0.94303 0.99677 0.99378 1.21561 0.98424 1.02150 0.92519 0.90856 0.97385 0.89193 0.88286 0.90469 0.87690 0.91943 0.91031 0.89891 0.90236 0.92538 0.96991 0.95737 0.81065 0.93950 0.87480 0.93832 0.95430 0.90859 0.92870 0.90610 0.93238 0.90408 0.90599 0.89978 0.92819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.05 10.84 113.37 1.23 2.28 16 2 O -0.37 -13.29 8.60 -130.36 -1.12 -14.41 16 3 C 0.08 2.23 1.34 29.85 0.04 2.27 16 4 H 0.10 2.19 7.06 -2.39 -0.02 2.17 16 5 C 0.45 16.18 5.44 87.66 0.48 16.66 16 6 O -0.49 -24.34 10.03 15.59 0.16 -24.18 16 7 N -0.62 -17.52 2.98 -794.95 -2.37 -19.89 16 8 C 0.09 1.58 5.58 86.36 0.48 2.06 16 9 C -0.13 -1.60 6.08 30.67 0.19 -1.41 16 10 C -0.11 -1.62 5.88 30.62 0.18 -1.44 16 11 C -0.12 -2.71 5.36 30.67 0.16 -2.54 16 12 C 0.14 4.46 2.91 44.97 0.13 4.59 16 13 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 14 C 0.17 7.34 4.87 86.38 0.42 7.76 16 15 N -0.72 -38.20 3.05 -343.44 -1.05 -39.25 16 16 C -0.18 -11.75 9.72 84.03 0.82 -10.93 16 17 H 0.04 2.62 8.06 -2.91 -0.02 2.59 16 18 C -0.08 -4.97 5.50 84.86 0.47 -4.50 16 19 N -1.00 -69.88 13.97 21.65 0.30 -69.58 16 20 Si 0.96 50.44 28.01 68.60 1.92 52.36 16 21 H -0.28 -14.33 7.11 99.48 0.71 -13.62 16 22 H -0.30 -15.47 7.11 99.48 0.71 -14.77 16 23 H -0.26 -12.71 6.15 99.48 0.61 -12.10 16 24 C -0.07 -1.46 1.57 -10.79 -0.02 -1.47 16 25 C -0.10 -2.92 4.82 30.60 0.15 -2.77 16 26 C -0.11 -2.28 5.92 30.59 0.18 -2.10 16 27 C -0.12 -1.92 5.92 30.59 0.18 -1.74 16 28 C -0.11 -1.45 5.92 30.60 0.18 -1.27 16 29 C -0.11 -1.84 5.11 30.60 0.16 -1.68 16 30 H 0.07 1.85 7.97 -2.39 -0.02 1.83 16 31 H 0.01 0.32 8.11 -2.39 -0.02 0.30 16 32 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 33 H 0.10 1.35 4.33 -2.39 -0.01 1.34 16 34 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.10 0.70 8.14 -2.38 -0.02 0.68 16 36 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 37 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.01 0.55 8.13 -2.39 -0.02 0.53 16 42 H 0.02 1.23 6.36 -2.39 -0.02 1.22 16 43 H 0.36 18.31 5.16 -92.71 -0.48 17.83 16 44 H 0.25 16.78 8.31 -92.71 -0.77 16.01 16 45 H 0.11 1.86 5.91 -2.39 -0.01 1.84 16 46 H 0.04 1.46 7.54 -2.39 -0.02 1.44 16 47 H 0.03 0.95 7.38 -2.38 -0.02 0.93 16 48 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 49 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 50 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 51 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 52 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 53 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 54 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 55 H 0.05 1.14 7.85 -2.39 -0.02 1.12 16 Total: -1.00 -86.71 402.25 3.54 -83.17 By element: Atomic # 1 Polarization: 27.73 SS G_CDS: 0.27 Total: 28.00 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: 5.42 Total: 3.77 kcal Atomic # 7 Polarization: -125.60 SS G_CDS: -3.12 Total: -128.71 kcal Atomic # 8 Polarization: -37.63 SS G_CDS: -0.96 Total: -38.59 kcal Atomic # 14 Polarization: 50.44 SS G_CDS: 1.92 Total: 52.36 kcal Total: -86.71 3.54 -83.17 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674415709.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.053 kcal (2) G-P(sol) polarization free energy of solvation -86.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds