Wall clock time and date at job start Tue Mar 31 2020 22:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42888 * 1 3 3 C 1.42900 * 113.99902 * 2 1 4 4 H 1.09000 * 109.47358 * 14.40526 * 3 2 1 5 5 C 1.50706 * 109.47487 * 134.40693 * 3 2 1 6 6 O 1.21282 * 119.99764 * 26.72743 * 5 3 2 7 7 N 1.34774 * 120.00199 * 206.73479 * 5 3 2 8 8 C 1.46929 * 120.63012 * 5.96314 * 7 5 3 9 9 C 1.53189 * 108.77471 * 126.41677 * 8 7 5 10 10 C 1.53039 * 109.31454 * 54.63145 * 9 8 7 11 11 C 1.53038 * 109.54004 * 298.63646 * 10 9 8 12 12 C 1.46928 * 120.63066 * 185.98990 * 7 5 3 13 13 H 1.08994 * 109.58736 * 113.79513 * 12 7 5 14 14 C 1.53000 * 109.58493 * 353.51191 * 12 7 5 15 15 N 1.46502 * 109.47052 * 67.64183 * 14 12 7 16 16 C 1.36932 * 119.99807 * 174.64332 * 15 14 12 17 17 H 1.08001 * 120.00511 * 359.97438 * 16 15 14 18 18 C 1.38814 * 119.99926 * 180.02562 * 16 15 14 19 19 N 1.31623 * 120.00022 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 119.99879 * 359.97438 * 18 16 15 21 21 H 1.48507 * 109.46829 * 90.00634 * 20 18 16 22 22 H 1.48501 * 109.47356 * 209.99986 * 20 18 16 23 23 H 1.48495 * 109.47548 * 330.00462 * 20 18 16 24 24 C 1.53006 * 109.47376 * 254.40602 * 3 2 1 25 25 C 1.53000 * 109.47305 * 174.61449 * 24 3 2 26 26 C 1.53001 * 109.46975 * 180.02562 * 25 24 3 27 27 C 1.52999 * 109.47159 * 59.99607 * 26 25 24 28 28 C 1.52998 * 109.47492 * 300.00466 * 27 26 25 29 29 C 1.52994 * 109.47460 * 59.99430 * 28 27 26 30 30 H 1.09006 * 109.47446 * 184.38651 * 1 2 3 31 31 H 1.09005 * 109.47766 * 304.38360 * 1 2 3 32 32 H 1.09005 * 109.47705 * 64.38471 * 1 2 3 33 33 H 1.09002 * 109.58678 * 246.20243 * 8 7 5 34 34 H 1.08998 * 109.58774 * 6.48589 * 8 7 5 35 35 H 1.09002 * 109.49981 * 174.58647 * 9 8 7 36 36 H 1.09003 * 109.49732 * 294.68440 * 9 8 7 37 37 H 1.09004 * 109.45508 * 58.66050 * 10 9 8 38 38 H 1.09001 * 109.46368 * 178.62488 * 10 9 8 39 39 H 1.08999 * 109.49893 * 301.41434 * 11 10 9 40 40 H 1.08997 * 109.49555 * 181.31368 * 11 10 9 41 41 H 1.09001 * 109.46854 * 187.63899 * 14 12 7 42 42 H 1.09003 * 109.47002 * 307.64137 * 14 12 7 43 43 H 0.96999 * 119.99523 * 354.64714 * 15 14 12 44 44 H 0.97002 * 119.99464 * 179.97438 * 19 18 16 45 45 H 1.09004 * 109.46658 * 294.61264 * 24 3 2 46 46 H 1.08999 * 109.47224 * 300.00013 * 25 24 3 47 47 H 1.08998 * 109.47027 * 60.00378 * 25 24 3 48 48 H 1.09004 * 109.46812 * 299.99707 * 26 25 24 49 49 H 1.09000 * 109.46696 * 180.02562 * 26 25 24 50 50 H 1.09000 * 109.47165 * 179.97438 * 27 26 25 51 51 H 1.08999 * 109.46732 * 60.00190 * 27 26 25 52 52 H 1.08999 * 109.46907 * 299.99616 * 28 27 26 53 53 H 1.08999 * 109.47092 * 180.02562 * 28 27 26 54 54 H 1.08998 * 109.47563 * 180.02562 * 29 28 27 55 55 H 1.08999 * 109.46908 * 60.00187 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.2486 2.0423 0.2557 5 6 3.1227 1.3601 1.0150 6 8 3.7189 0.3478 1.3163 7 7 3.4551 2.5338 1.5881 8 6 2.6602 3.7429 1.3333 9 6 2.2367 4.3465 2.6760 10 6 3.4781 4.5808 3.5398 11 6 4.1740 3.2447 3.8089 12 6 4.6196 2.6286 2.4790 13 1 5.3802 3.2603 2.0202 14 6 5.1930 1.2314 2.7241 15 7 5.7688 0.7147 1.4800 16 6 6.4408 -0.4784 1.4804 17 1 6.5467 -1.0383 2.3979 18 6 6.9868 -0.9678 0.3018 19 7 7.6323 -2.1149 0.3020 20 14 6.8043 0.0009 -1.2849 21 1 7.9521 0.9318 -1.4313 22 1 6.7771 -0.9361 -2.4367 23 1 5.5389 0.7771 -1.2483 24 6 2.5718 1.6137 -1.3894 25 6 3.0730 3.0588 -1.4279 26 6 3.6341 3.3672 -2.8175 27 6 2.5342 3.1808 -3.8645 28 6 2.0329 1.7358 -3.8260 29 6 1.4719 1.4273 -2.4365 30 1 -0.3634 -1.0247 0.0786 31 1 -0.3635 0.5804 0.8481 32 1 -0.3635 0.4443 -0.9267 33 1 3.2611 4.4656 0.7811 34 1 1.7757 3.4829 0.7518 35 1 1.7286 5.2955 2.5042 36 1 1.5623 3.6595 3.1872 37 1 4.1632 5.2485 3.0172 38 1 3.1819 5.0330 4.4863 39 1 3.4814 2.5680 4.3093 40 1 5.0448 3.4094 4.4434 41 1 5.9684 1.2859 3.4882 42 1 4.3976 0.5662 3.0602 43 1 5.6740 1.2178 0.6562 44 1 8.0136 -2.4570 -0.5218 45 1 3.3982 0.9366 -1.6056 46 1 2.2467 3.7359 -1.2116 47 1 3.8564 3.1916 -0.6817 48 1 4.4605 2.6901 -3.0341 49 1 3.9916 4.3965 -2.8446 50 1 2.9338 3.4009 -4.8544 51 1 1.7079 3.8578 -3.6478 52 1 2.8592 1.0587 -4.0427 53 1 1.2496 1.6029 -4.5723 54 1 1.1152 0.3978 -2.4089 55 1 0.6456 2.1044 -2.2198 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674415710.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:08 Heat of formation + Delta-G solvation = -63.899581 kcal Electronic energy + Delta-G solvation = -33852.195392 eV Core-core repulsion = 29889.606812 eV Total energy + Delta-G solvation = -3962.588579 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.97632 -39.91594 -38.43020 -37.77357 -36.47115 -34.26291 -33.72058 -32.53184 -31.94566 -31.55176 -28.80429 -27.82108 -26.59923 -25.54992 -24.24213 -23.68165 -23.21239 -22.33499 -21.51002 -20.74462 -20.17515 -19.50453 -18.04627 -17.61691 -17.25468 -16.66317 -16.48101 -15.97336 -15.81569 -15.62518 -15.51986 -15.32198 -15.07640 -15.05907 -14.85437 -14.64880 -14.53374 -14.11951 -13.84623 -13.71631 -13.57642 -13.36632 -13.22095 -13.02997 -12.95618 -12.86770 -12.71548 -12.34762 -12.30254 -12.08016 -11.99021 -11.93860 -11.87342 -11.73303 -11.51484 -11.45979 -11.35943 -11.23598 -10.97249 -10.92619 -10.62750 -9.68052 -9.54565 -8.88751 -7.98993 -5.20475 1.22447 1.30481 1.36702 1.86630 1.92855 2.47486 2.94007 3.32719 3.52814 3.59672 3.64704 3.68463 3.85765 3.88022 3.99788 4.03756 4.11910 4.23740 4.29911 4.32709 4.35698 4.37627 4.39991 4.47791 4.53558 4.56966 4.59271 4.59709 4.62283 4.74603 4.77686 4.82459 4.85529 4.95936 4.98521 5.03652 5.08098 5.13587 5.16822 5.19792 5.20649 5.24622 5.26446 5.32245 5.36298 5.42484 5.53517 5.53804 5.74773 5.80584 6.16281 6.24271 6.63753 7.13529 7.55187 7.93010 8.11319 9.24723 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.007780 B = 0.006958 C = 0.004856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3598.069225 B = 4023.395792 C = 5764.211281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.398 6.398 3 C 0.086 3.914 4 H 0.117 0.883 5 C 0.461 3.539 6 O -0.501 6.501 7 N -0.610 5.610 8 C 0.096 3.904 9 C -0.130 4.130 10 C -0.112 4.112 11 C -0.120 4.120 12 C 0.145 3.855 13 H 0.073 0.927 14 C 0.166 3.834 15 N -0.718 5.718 16 C -0.192 4.192 17 H 0.045 0.955 18 C -0.076 4.076 19 N -0.994 5.994 20 Si 0.954 3.046 21 H -0.277 1.277 22 H -0.305 1.305 23 H -0.260 1.260 24 C -0.098 4.098 25 C -0.115 4.115 26 C -0.124 4.124 27 C -0.111 4.111 28 C -0.123 4.123 29 C -0.104 4.104 30 H 0.087 0.913 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.058 0.942 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.056 0.944 40 H 0.080 0.920 41 H 0.019 0.981 42 H 0.019 0.981 43 H 0.357 0.643 44 H 0.252 0.748 45 H 0.026 0.974 46 H 0.105 0.895 47 H 0.053 0.947 48 H 0.026 0.974 49 H 0.084 0.916 50 H 0.066 0.934 51 H 0.089 0.911 52 H 0.031 0.969 53 H 0.082 0.918 54 H 0.054 0.946 55 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.284 23.482 -2.712 31.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.316 6.316 3 C 0.026 3.974 4 H 0.134 0.866 5 C 0.247 3.753 6 O -0.373 6.373 7 N -0.348 5.348 8 C -0.025 4.025 9 C -0.168 4.168 10 C -0.149 4.149 11 C -0.159 4.159 12 C 0.041 3.959 13 H 0.091 0.909 14 C 0.039 3.961 15 N -0.361 5.361 16 C -0.323 4.323 17 H 0.063 0.937 18 C -0.266 4.266 19 N -0.648 5.648 20 Si 0.784 3.216 21 H -0.203 1.203 22 H -0.232 1.232 23 H -0.186 1.186 24 C -0.117 4.117 25 C -0.153 4.153 26 C -0.162 4.162 27 C -0.148 4.148 28 C -0.160 4.160 29 C -0.141 4.141 30 H 0.106 0.894 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.104 0.896 34 H 0.116 0.884 35 H 0.124 0.876 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.074 0.926 40 H 0.099 0.901 41 H 0.037 0.963 42 H 0.037 0.963 43 H 0.190 0.810 44 H 0.060 0.940 45 H 0.044 0.956 46 H 0.123 0.877 47 H 0.072 0.928 48 H 0.045 0.955 49 H 0.102 0.898 50 H 0.085 0.915 51 H 0.108 0.892 52 H 0.050 0.950 53 H 0.101 0.899 54 H 0.073 0.927 55 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -20.796 22.561 -2.436 30.780 hybrid contribution 0.633 -0.864 -0.865 1.376 sum -20.163 21.697 -3.301 29.803 Atomic orbital electron populations 1.23180 0.79035 1.03795 1.01631 1.88067 1.21784 1.26937 1.94814 1.22213 0.94846 0.86498 0.93885 0.86604 1.21241 0.86140 0.84301 0.83629 1.91148 1.49692 1.35646 1.60770 1.48077 1.29819 1.09220 1.47733 1.22300 0.95763 0.85837 0.98612 1.21949 0.97833 1.02140 0.94906 1.21489 0.97097 0.95270 1.01069 1.21856 1.01369 0.98001 0.94661 1.21413 0.87161 0.95528 0.91792 0.90934 1.20882 0.94456 0.92753 0.87961 1.42503 1.64525 1.22331 1.06761 1.18963 1.21827 0.96981 0.94578 0.93711 1.25321 1.02140 0.98498 1.00621 1.69893 1.45148 1.22561 1.27222 0.85399 0.78192 0.78030 0.80004 1.20337 1.23203 1.18551 1.21503 0.98603 0.98125 0.93485 1.21848 1.01518 0.94181 0.97713 1.21576 0.97982 1.01602 0.95003 1.21510 0.98553 0.96163 0.98556 1.21568 1.00291 0.97287 0.96904 1.21539 0.97065 1.01890 0.93595 0.89444 0.92533 0.91417 0.89644 0.88400 0.87611 0.92300 0.90806 0.89945 0.92561 0.90122 0.96331 0.96334 0.80971 0.93974 0.95559 0.87652 0.92816 0.95547 0.89773 0.91537 0.89250 0.95027 0.89921 0.92684 0.88740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 10.31 113.37 1.17 1.58 16 2 O -0.40 -13.53 9.37 -131.47 -1.23 -14.76 16 3 C 0.09 2.51 1.90 29.85 0.06 2.56 16 4 H 0.12 2.24 5.37 -2.39 -0.01 2.23 16 5 C 0.46 17.09 5.67 87.66 0.50 17.58 16 6 O -0.50 -25.64 10.41 14.48 0.15 -25.49 16 7 N -0.61 -17.22 2.37 -795.02 -1.88 -19.10 16 8 C 0.10 1.54 4.16 86.36 0.36 1.89 16 9 C -0.13 -1.57 6.08 30.67 0.19 -1.39 16 10 C -0.11 -1.58 5.88 30.62 0.18 -1.40 16 11 C -0.12 -2.69 5.38 30.67 0.16 -2.52 16 12 C 0.14 4.48 2.94 44.98 0.13 4.62 16 13 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 14 C 0.17 7.39 4.87 86.38 0.42 7.81 16 15 N -0.72 -38.93 2.98 -343.44 -1.02 -39.95 16 16 C -0.19 -12.59 10.17 84.03 0.85 -11.74 16 17 H 0.04 3.23 8.06 -2.91 -0.02 3.20 16 18 C -0.08 -5.13 5.50 84.86 0.47 -4.67 16 19 N -0.99 -71.27 13.97 21.65 0.30 -70.97 16 20 Si 0.95 53.02 27.73 68.60 1.90 54.92 16 21 H -0.28 -14.55 7.11 99.48 0.71 -13.85 16 22 H -0.30 -17.21 7.11 99.48 0.71 -16.50 16 23 H -0.26 -13.65 5.67 99.48 0.56 -13.09 16 24 C -0.10 -2.77 1.96 -10.79 -0.02 -2.79 16 25 C -0.12 -2.48 3.48 30.59 0.11 -2.38 16 26 C -0.12 -2.62 5.92 30.59 0.18 -2.44 16 27 C -0.11 -1.82 5.92 30.59 0.18 -1.64 16 28 C -0.12 -2.49 5.92 30.59 0.18 -2.31 16 29 C -0.10 -2.20 4.03 30.59 0.12 -2.08 16 30 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 31 H 0.06 0.97 8.05 -2.38 -0.02 0.95 16 32 H 0.07 1.06 6.54 -2.38 -0.02 1.05 16 33 H 0.09 1.13 7.25 -2.39 -0.02 1.12 16 34 H 0.10 1.20 4.33 -2.39 -0.01 1.19 16 35 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 38 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.02 0.95 6.44 -2.39 -0.02 0.93 16 43 H 0.36 18.87 4.76 -92.71 -0.44 18.43 16 44 H 0.25 17.20 8.31 -92.71 -0.77 16.42 16 45 H 0.03 1.07 7.30 -2.39 -0.02 1.05 16 46 H 0.11 1.36 6.98 -2.39 -0.02 1.35 16 47 H 0.05 1.37 5.52 -2.39 -0.01 1.36 16 48 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 49 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 50 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 51 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 52 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 53 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 54 H 0.05 1.33 6.71 -2.39 -0.02 1.32 16 55 H 0.09 1.32 8.09 -2.39 -0.02 1.30 16 Total: -1.00 -92.64 392.65 3.74 -88.91 By element: Atomic # 1 Polarization: 25.46 SS G_CDS: 0.28 Total: 25.73 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: 5.24 Total: 0.71 kcal Atomic # 7 Polarization: -127.42 SS G_CDS: -2.60 Total: -130.02 kcal Atomic # 8 Polarization: -39.17 SS G_CDS: -1.08 Total: -40.25 kcal Atomic # 14 Polarization: 53.02 SS G_CDS: 1.90 Total: 54.92 kcal Total: -92.64 3.74 -88.91 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674415710.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.007 kcal (2) G-P(sol) polarization free energy of solvation -92.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds