Wall clock time and date at job start Tue Mar 31 2020 21:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42897 * 109.47231 * 2 1 4 4 C 1.42902 * 114.00061 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47267 * 29.99447 * 4 3 2 6 6 C 1.53005 * 109.46738 * 270.00005 * 4 3 2 7 7 C 1.50702 * 109.47316 * 149.99896 * 4 3 2 8 8 O 1.21284 * 119.99472 * 10.49963 * 7 4 3 9 9 N 1.34768 * 120.00000 * 190.49555 * 7 4 3 10 10 C 1.46927 * 120.63346 * 5.18315 * 9 7 4 11 11 C 1.52764 * 109.00778 * 233.58164 * 10 9 7 12 12 C 1.53041 * 109.38092 * 305.58512 * 11 10 9 13 13 C 1.52997 * 109.45972 * 181.26083 * 12 11 10 14 14 H 1.08996 * 109.50007 * 299.99306 * 13 12 11 15 15 C 1.53044 * 109.49617 * 179.97438 * 13 12 11 16 16 C 1.53045 * 109.53808 * 178.68280 * 15 13 12 17 17 C 1.53196 * 109.31090 * 61.36169 * 16 15 13 18 18 N 1.46927 * 108.77642 * 305.36764 * 17 16 15 19 19 C 1.36937 * 120.62815 * 233.58245 * 18 17 16 20 20 H 1.07998 * 120.00093 * 152.62564 * 19 18 17 21 21 C 1.38812 * 119.99895 * 332.62645 * 19 18 17 22 22 N 1.31622 * 119.99750 * 160.21881 * 21 19 18 23 23 Si 1.86802 * 120.00389 * 340.22024 * 21 19 18 24 24 H 1.48501 * 109.46912 * 95.01459 * 23 21 19 25 25 H 1.48498 * 109.47228 * 215.01485 * 23 21 19 26 26 H 1.48493 * 109.46964 * 335.01750 * 23 21 19 27 27 C 1.46919 * 118.73780 * 53.60908 * 18 17 16 28 28 C 1.53044 * 109.53817 * 61.24032 * 12 11 10 29 29 C 1.46934 * 120.62934 * 185.45503 * 9 7 4 30 30 H 1.09007 * 109.47226 * 299.99682 * 1 2 3 31 31 H 1.09000 * 109.47685 * 59.99859 * 1 2 3 32 32 H 1.08999 * 109.47321 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47328 * 239.99802 * 2 1 3 34 34 H 1.08997 * 109.47264 * 120.00432 * 2 1 3 35 35 H 1.08996 * 109.47002 * 295.17587 * 6 4 3 36 36 H 1.08991 * 109.47445 * 55.18066 * 6 4 3 37 37 H 1.08999 * 109.46847 * 175.18251 * 6 4 3 38 38 H 1.09000 * 109.58302 * 353.41356 * 10 9 7 39 39 H 1.08996 * 109.59083 * 113.83605 * 10 9 7 40 40 H 1.08998 * 109.56447 * 185.54975 * 11 10 9 41 41 H 1.09004 * 109.38763 * 65.50887 * 11 10 9 42 42 H 1.09006 * 109.45042 * 301.22555 * 12 11 10 43 43 H 1.08996 * 109.46205 * 298.70274 * 15 13 12 44 44 H 1.08998 * 109.46018 * 58.66227 * 15 13 12 45 45 H 1.08990 * 109.49886 * 181.31589 * 16 15 13 46 46 H 1.09000 * 109.49815 * 301.38714 * 16 15 13 47 47 H 1.09006 * 109.58411 * 65.15514 * 17 16 15 48 48 H 1.09000 * 109.58792 * 185.57735 * 17 16 15 49 49 H 0.96999 * 119.99933 * 179.97438 * 22 21 19 50 50 H 1.08999 * 109.58601 * 186.60249 * 27 18 17 51 51 H 1.09002 * 109.58765 * 66.17812 * 27 18 17 52 52 H 1.09007 * 109.49746 * 178.68581 * 28 12 11 53 53 H 1.08994 * 109.49936 * 58.58698 * 28 12 11 54 54 H 1.09005 * 109.58315 * 246.16009 * 29 9 7 55 55 H 1.08999 * 109.58673 * 6.44284 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4601 -0.0006 5 1 3.8631 0.6016 -0.5146 6 6 3.9398 1.5001 1.4418 7 6 3.8342 2.7264 -0.7110 8 8 2.9947 3.5517 -1.0027 9 7 5.1277 2.9419 -1.0220 10 6 6.1392 1.9045 -0.7779 11 6 7.2728 2.5010 0.0544 12 6 7.8110 3.7523 -0.6432 13 6 8.9674 4.3334 0.1729 14 1 8.6129 4.5973 1.1692 15 6 9.5066 5.5845 -0.5244 16 6 10.6418 6.1852 0.3079 17 6 11.7802 5.1665 0.4220 18 7 11.2387 3.9101 0.9577 19 6 11.7973 3.3245 2.0623 20 1 11.1945 2.7014 2.7063 21 6 13.1385 3.5317 2.3544 22 7 13.5875 3.3167 3.5728 23 14 14.3060 4.1156 1.0182 24 1 14.4298 5.5942 1.0807 25 1 15.6409 3.4980 1.2226 26 1 13.7754 3.7191 -0.3108 27 6 10.0869 3.2938 0.2854 28 6 6.6953 4.7934 -0.7594 29 6 5.5542 4.2208 -1.6062 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.5764 2.4042 1.9303 36 1 3.5759 0.6250 1.9799 37 1 5.0298 1.4999 1.4426 38 1 5.6873 1.0741 -0.2354 39 1 6.5356 1.5496 -1.7291 40 1 8.0739 1.7691 0.1578 41 1 6.8950 2.7687 1.0412 42 1 8.1663 3.4881 -1.6393 43 1 9.8829 5.3163 -1.5116 44 1 8.7056 6.3163 -0.6279 45 1 11.0097 7.0891 -0.1773 46 1 10.2721 6.4313 1.3034 47 1 12.2110 4.9881 -0.5633 48 1 12.5476 5.5499 1.0946 49 1 14.5247 3.4611 3.7768 50 1 9.7369 2.4416 0.8678 51 1 10.3796 2.9627 -0.7110 52 1 7.0853 5.6931 -1.2354 53 1 6.3224 5.0396 0.2347 54 1 5.9020 4.0586 -2.6264 55 1 4.7159 4.9174 -1.6123 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674504378.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:22 Heat of formation + Delta-G solvation = -91.215558 kcal Electronic energy + Delta-G solvation = -31142.758200 eV Core-core repulsion = 27178.985111 eV Total energy + Delta-G solvation = -3963.773089 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.58828 -40.12316 -38.91555 -38.01449 -35.64433 -34.18465 -33.49428 -32.72540 -31.98799 -31.04166 -30.65340 -27.24577 -26.71392 -25.23013 -24.46263 -23.66407 -23.29951 -22.87340 -21.64556 -20.67892 -19.94825 -18.74359 -18.42850 -17.86223 -17.29945 -16.89216 -16.64559 -16.21765 -15.97537 -15.57162 -15.43781 -15.31840 -14.99987 -14.87592 -14.77748 -14.44020 -14.32071 -14.20403 -14.00802 -13.71298 -13.47605 -13.36088 -13.33973 -13.17944 -13.06357 -12.87085 -12.77184 -12.49253 -12.31848 -12.27745 -12.13496 -12.04549 -11.86232 -11.74209 -11.58244 -11.48006 -11.29853 -11.16449 -10.97093 -10.75712 -10.59348 -10.44748 -9.66720 -8.86599 -8.14653 -5.45300 1.30484 1.40928 1.49239 1.50094 1.74375 2.43009 2.80579 3.07967 3.38242 3.42317 3.72888 3.81487 3.83705 3.89962 3.96880 4.13746 4.18743 4.19400 4.20353 4.25601 4.31669 4.40308 4.47954 4.48118 4.51286 4.54449 4.59677 4.67558 4.72995 4.73922 4.80313 4.83099 4.88971 4.92758 4.96543 5.01340 5.03571 5.07699 5.10678 5.16704 5.19840 5.23157 5.26308 5.27120 5.34061 5.40781 5.51907 5.60019 5.72962 5.89790 6.10734 6.15050 6.37557 6.95829 7.10069 7.66824 8.07802 9.05290 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.021156 B = 0.002407 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.176159 B =11632.120437 C =12519.461655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.046 3.954 3 O -0.393 6.393 4 C 0.073 3.927 5 H 0.114 0.886 6 C -0.169 4.169 7 C 0.510 3.490 8 O -0.577 6.577 9 N -0.603 5.603 10 C 0.102 3.898 11 C -0.133 4.133 12 C -0.069 4.069 13 C -0.088 4.088 14 H 0.048 0.952 15 C -0.102 4.102 16 C -0.131 4.131 17 C 0.118 3.882 18 N -0.622 5.622 19 C -0.241 4.241 20 H 0.052 0.948 21 C -0.041 4.041 22 N -0.960 5.960 23 Si 0.948 3.052 24 H -0.282 1.282 25 H -0.314 1.314 26 H -0.257 1.257 27 C 0.152 3.848 28 C -0.120 4.120 29 C 0.114 3.886 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.096 0.904 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.048 0.952 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.058 0.942 42 H 0.086 0.914 43 H 0.067 0.933 44 H 0.079 0.921 45 H 0.076 0.924 46 H 0.045 0.955 47 H 0.033 0.967 48 H 0.040 0.960 49 H 0.260 0.740 50 H 0.057 0.943 51 H 0.034 0.966 52 H 0.090 0.910 53 H 0.050 0.950 54 H 0.086 0.914 55 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.807 -5.539 -12.781 25.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.030 4.030 3 O -0.312 6.312 4 C 0.012 3.988 5 H 0.132 0.868 6 C -0.227 4.227 7 C 0.298 3.702 8 O -0.456 6.456 9 N -0.337 5.337 10 C -0.019 4.019 11 C -0.171 4.171 12 C -0.088 4.088 13 C -0.108 4.108 14 H 0.066 0.934 15 C -0.139 4.139 16 C -0.170 4.170 17 C -0.007 4.007 18 N -0.346 5.346 19 C -0.371 4.371 20 H 0.070 0.930 21 C -0.235 4.235 22 N -0.607 5.607 23 Si 0.778 3.222 24 H -0.209 1.209 25 H -0.243 1.243 26 H -0.181 1.181 27 C 0.027 3.973 28 C -0.158 4.158 29 C -0.008 4.008 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.114 0.886 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.067 0.933 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.122 0.878 39 H 0.111 0.889 40 H 0.105 0.895 41 H 0.076 0.924 42 H 0.105 0.895 43 H 0.086 0.914 44 H 0.097 0.903 45 H 0.095 0.905 46 H 0.064 0.936 47 H 0.051 0.949 48 H 0.058 0.942 49 H 0.069 0.931 50 H 0.076 0.924 51 H 0.052 0.948 52 H 0.109 0.891 53 H 0.069 0.931 54 H 0.104 0.896 55 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -21.266 -4.974 -12.854 25.342 hybrid contribution 1.253 0.256 0.285 1.310 sum -20.013 -4.719 -12.569 24.099 Atomic orbital electron populations 1.21768 0.93166 1.03476 1.02399 1.22844 0.96323 0.82247 1.01576 1.88029 1.19358 1.28649 1.95171 1.21990 0.83353 0.95991 0.97457 0.86845 1.22296 1.02773 1.03705 0.93878 1.20958 0.82208 0.88682 0.78360 1.90670 1.51315 1.48438 1.55200 1.48182 1.06564 1.17129 1.61816 1.22029 0.88478 0.89792 1.01626 1.21962 0.98098 0.98123 0.98942 1.21048 0.93437 0.94710 0.99616 1.21503 0.94765 0.95987 0.98511 0.93355 1.21507 0.97140 0.96930 0.98322 1.21944 0.96917 0.97974 1.00170 1.21401 0.95985 0.86950 0.96347 1.44512 1.35634 1.22594 1.31908 1.18870 0.92234 1.26297 0.99668 0.92978 1.25918 0.98592 1.00883 0.98099 1.69967 1.15434 1.55341 1.19947 0.85879 0.77689 0.77156 0.81486 1.20882 1.24287 1.18092 1.21191 0.86157 0.94599 0.95329 1.21945 0.94709 0.99115 1.00078 1.21644 0.97331 0.84621 0.97244 0.92531 0.92940 0.88584 0.91944 0.91371 0.93257 0.89265 0.89234 0.87796 0.88901 0.89500 0.92353 0.89536 0.91399 0.90284 0.90532 0.93565 0.94917 0.94168 0.93147 0.92434 0.94771 0.89125 0.93088 0.89624 0.91037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 10.28 71.98 0.74 -1.14 16 2 C 0.05 0.63 6.47 71.98 0.47 1.09 16 3 O -0.39 -8.71 9.54 -130.15 -1.24 -9.95 16 4 C 0.07 1.31 2.28 29.85 0.07 1.37 16 5 H 0.11 1.28 6.77 -2.39 -0.02 1.26 16 6 C -0.17 -2.59 9.20 71.98 0.66 -1.93 16 7 C 0.51 12.30 7.03 87.66 0.62 12.92 16 8 O -0.58 -19.53 15.97 15.78 0.25 -19.28 16 9 N -0.60 -11.37 2.98 -819.72 -2.44 -13.81 16 10 C 0.10 1.35 5.57 86.22 0.48 1.83 16 11 C -0.13 -2.30 4.93 30.53 0.15 -2.15 16 12 C -0.07 -1.32 1.74 -10.77 -0.02 -1.34 16 13 C -0.09 -2.36 1.92 -10.72 -0.02 -2.38 16 14 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 15 C -0.10 -2.58 4.85 30.62 0.15 -2.44 16 16 C -0.13 -4.22 6.08 30.67 0.19 -4.04 16 17 C 0.12 4.87 4.18 86.36 0.36 5.23 16 18 N -0.62 -28.20 2.77 -699.10 -1.94 -30.14 16 19 C -0.24 -13.43 10.04 84.03 0.84 -12.59 16 20 H 0.05 3.17 8.06 -2.91 -0.02 3.14 16 21 C -0.04 -2.38 5.25 84.86 0.45 -1.93 16 22 N -0.96 -60.43 13.97 21.65 0.30 -60.12 16 23 Si 0.95 46.60 24.34 68.60 1.67 48.27 16 24 H -0.28 -13.29 6.71 99.48 0.67 -12.62 16 25 H -0.31 -15.72 7.11 99.48 0.71 -15.02 16 26 H -0.26 -11.87 6.41 99.48 0.64 -11.23 16 27 C 0.15 5.23 5.28 86.36 0.46 5.69 16 28 C -0.12 -2.20 5.05 30.67 0.15 -2.05 16 29 C 0.11 2.12 6.42 86.36 0.55 2.68 16 30 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.06 0.67 8.08 -2.39 -0.02 0.65 16 34 H 0.07 0.68 7.79 -2.39 -0.02 0.66 16 35 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.09 1.04 7.79 -2.39 -0.02 1.02 16 37 H 0.09 1.16 5.74 -2.39 -0.01 1.15 16 38 H 0.10 0.97 4.55 -2.39 -0.01 0.96 16 39 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.09 1.53 6.50 -2.39 -0.02 1.51 16 41 H 0.06 1.16 7.77 -2.39 -0.02 1.14 16 42 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 43 H 0.07 1.59 8.14 -2.39 -0.02 1.58 16 44 H 0.08 1.65 6.33 -2.39 -0.02 1.64 16 45 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 46 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 47 H 0.03 1.30 6.95 -2.38 -0.02 1.29 16 48 H 0.04 1.88 4.49 -2.39 -0.01 1.87 16 49 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 50 H 0.06 2.01 6.52 -2.39 -0.02 1.99 16 51 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 52 H 0.09 1.47 6.33 -2.38 -0.02 1.46 16 53 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 54 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 55 H 0.07 1.64 7.04 -2.39 -0.02 1.62 16 Total: -1.00 -76.81 401.22 3.64 -73.17 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: 0.74 Total: 13.03 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: 6.29 Total: -1.17 kcal Atomic # 7 Polarization: -100.00 SS G_CDS: -4.08 Total: -104.08 kcal Atomic # 8 Polarization: -28.24 SS G_CDS: -0.99 Total: -29.23 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 1.67 Total: 48.27 kcal Total: -76.81 3.64 -73.17 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674504378.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.044 kcal (2) G-P(sol) polarization free energy of solvation -76.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds