Wall clock time and date at job start Tue Mar 31 2020 21:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42911 * 109.47015 * 2 1 4 4 C 1.42895 * 113.99737 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47408 * 330.00441 * 4 3 2 6 6 C 1.53004 * 109.46997 * 89.99938 * 4 3 2 7 7 C 1.50698 * 109.47042 * 209.99887 * 4 3 2 8 8 O 1.21276 * 120.00183 * 344.25433 * 7 4 3 9 9 N 1.34777 * 119.99939 * 164.26042 * 7 4 3 10 10 C 1.46931 * 120.62991 * 185.07189 * 9 7 4 11 11 C 1.53191 * 108.77348 * 233.62467 * 10 9 7 12 12 C 1.53038 * 109.31651 * 305.36517 * 11 10 9 13 13 C 1.52992 * 109.46162 * 181.38463 * 12 11 10 14 14 H 1.08995 * 109.50061 * 299.93891 * 13 12 11 15 15 C 1.53041 * 109.49892 * 179.83537 * 13 12 11 16 16 C 1.53044 * 109.53885 * 178.68311 * 15 13 12 17 17 C 1.52762 * 109.38021 * 61.24284 * 16 15 13 18 18 N 1.46924 * 109.01094 * 305.58515 * 17 16 15 19 19 C 1.36934 * 120.63557 * 233.58445 * 18 17 16 20 20 H 1.07996 * 120.00432 * 151.79843 * 19 18 17 21 21 C 1.38814 * 119.99602 * 331.52888 * 19 18 17 22 22 N 1.31618 * 120.00171 * 342.19474 * 21 19 18 23 23 Si 1.86805 * 119.99751 * 162.19461 * 21 19 18 24 24 H 1.48494 * 109.47257 * 59.99870 * 23 21 19 25 25 H 1.48501 * 109.46844 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47007 * 299.99762 * 23 21 19 27 27 C 1.46931 * 118.73771 * 53.31200 * 18 17 16 28 28 C 1.53040 * 109.53846 * 61.36358 * 12 11 10 29 29 C 1.46924 * 120.63167 * 5.08593 * 9 7 4 30 30 H 1.09000 * 109.47151 * 300.00370 * 1 2 3 31 31 H 1.08993 * 109.46770 * 60.00059 * 1 2 3 32 32 H 1.08994 * 109.46947 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47055 * 240.00178 * 2 1 3 34 34 H 1.08999 * 109.47203 * 119.99404 * 2 1 3 35 35 H 1.09003 * 109.47203 * 293.79814 * 6 4 3 36 36 H 1.09004 * 109.47138 * 53.80083 * 6 4 3 37 37 H 1.08997 * 109.47100 * 173.79755 * 6 4 3 38 38 H 1.08996 * 109.58591 * 113.83637 * 10 9 7 39 39 H 1.09000 * 109.58302 * 353.41575 * 10 9 7 40 40 H 1.09004 * 109.49695 * 185.40849 * 11 10 9 41 41 H 1.09005 * 109.52291 * 65.33701 * 11 10 9 42 42 H 1.08999 * 109.45609 * 301.35907 * 12 11 10 43 43 H 1.08998 * 109.46236 * 298.70514 * 15 13 12 44 44 H 1.09000 * 109.45981 * 58.66718 * 15 13 12 45 45 H 1.09000 * 109.49845 * 181.31551 * 16 15 13 46 46 H 1.08995 * 109.49616 * 301.38587 * 16 15 13 47 47 H 1.09004 * 109.50831 * 185.70413 * 17 16 15 48 48 H 1.09002 * 109.43166 * 65.42207 * 17 16 15 49 49 H 0.96998 * 119.99754 * 180.02562 * 22 21 19 50 50 H 1.09003 * 109.58901 * 66.42498 * 27 18 17 51 51 H 1.09001 * 109.59014 * 186.85550 * 27 18 17 52 52 H 1.09002 * 109.49443 * 58.58410 * 28 12 11 53 53 H 1.08998 * 109.49746 * 178.68288 * 28 12 11 54 54 H 1.08998 * 109.58791 * 246.15995 * 29 9 7 55 55 H 1.09000 * 109.58643 * 6.45030 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3474 0.0000 4 6 3.4309 1.4602 0.0006 5 1 3.8631 0.6017 0.5147 6 6 3.9399 1.5002 -1.4417 7 6 3.8342 2.7266 0.7109 8 8 3.0121 3.5939 0.9180 9 7 5.1085 2.8954 1.1161 10 6 5.4930 4.0729 1.9062 11 6 6.6695 4.7683 1.2141 12 6 7.7995 3.7587 1.0000 13 6 8.9896 4.4579 0.3401 14 1 8.6829 4.8678 -0.6222 15 6 10.1217 3.4500 0.1293 16 6 11.3003 4.1408 -0.5606 17 6 11.8172 5.2701 0.3289 18 7 10.7017 6.1669 0.6605 19 6 10.7943 7.5126 0.4244 20 1 9.9025 8.0889 0.2272 21 6 12.0340 8.1369 0.4439 22 7 13.0597 7.5456 1.0190 23 14 12.2465 9.8163 -0.3461 24 1 11.3429 10.7920 0.3146 25 1 13.6547 10.2614 -0.1914 26 1 11.9110 9.7300 -1.7902 27 6 9.4825 5.5917 1.2449 28 6 7.3088 2.6253 0.0963 29 6 6.1395 1.9055 0.7758 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5137 0.8900 35 1 3.7453 0.5415 -1.9225 36 1 3.4249 2.2912 -1.9870 37 1 5.0120 1.6965 -1.4434 38 1 5.7909 3.7601 2.9070 39 1 4.6495 4.7602 1.9719 40 1 7.0266 5.5872 1.8387 41 1 6.3448 5.1608 0.2504 42 1 8.1070 3.3486 1.9620 43 1 10.4442 3.0590 1.0943 44 1 9.7661 2.6296 -0.4941 45 1 12.0970 3.4169 -0.7314 46 1 10.9724 4.5530 -1.5148 47 1 12.5888 5.8276 -0.2022 48 1 12.2325 4.8493 1.2446 49 1 13.9258 7.9821 1.0330 50 1 9.7035 5.1975 2.2369 51 1 8.7141 6.3612 1.3180 52 1 6.9777 3.0375 -0.8569 53 1 8.1210 1.9188 -0.0748 54 1 6.4902 1.4160 1.6843 55 1 5.7220 1.1614 0.0975 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674504379.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:26 Heat of formation + Delta-G solvation = -94.859329 kcal Electronic energy + Delta-G solvation = -30981.027610 eV Core-core repulsion = 27017.096516 eV Total energy + Delta-G solvation = -3963.931095 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.56932 -40.02391 -38.85347 -37.91431 -35.59684 -34.18216 -33.32219 -32.47497 -31.84812 -31.00485 -30.39892 -27.22503 -26.64984 -25.09493 -24.52522 -23.62152 -23.05398 -22.93716 -21.50771 -20.56100 -19.95780 -18.69486 -18.39883 -17.82016 -16.88708 -16.84974 -16.64322 -16.21539 -15.84049 -15.59963 -15.35628 -15.19109 -14.91020 -14.77250 -14.70100 -14.41085 -14.15551 -14.14412 -13.80497 -13.65391 -13.46629 -13.31618 -13.17765 -13.02458 -12.94500 -12.83247 -12.73000 -12.43344 -12.29184 -12.18875 -12.15058 -12.02909 -12.01012 -11.75502 -11.66372 -11.47516 -11.33671 -10.99980 -10.86310 -10.71609 -10.52021 -10.43393 -9.65863 -8.64383 -7.87597 -5.32065 1.44182 1.46258 1.50636 1.53142 1.74286 2.50037 2.83077 3.25732 3.42838 3.64240 3.77632 3.83470 3.88445 3.95809 4.00959 4.15361 4.20709 4.24578 4.29692 4.33193 4.36962 4.47321 4.49642 4.51608 4.55451 4.58905 4.63949 4.72985 4.79674 4.81520 4.89173 4.92072 4.92712 4.98405 5.02669 5.03512 5.11992 5.14732 5.17156 5.22060 5.24701 5.27501 5.38791 5.43322 5.44271 5.54343 5.60721 5.64256 5.70774 5.83201 6.12562 6.39413 6.40790 7.11578 7.15899 7.89306 8.39848 9.17904 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.024044 B = 0.002215 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.273838 B =12638.270617 C =13155.477767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.047 3.953 3 O -0.395 6.395 4 C 0.075 3.925 5 H 0.117 0.883 6 C -0.171 4.171 7 C 0.507 3.493 8 O -0.580 6.580 9 N -0.604 5.604 10 C 0.116 3.884 11 C -0.124 4.124 12 C -0.069 4.069 13 C -0.084 4.084 14 H 0.050 0.950 15 C -0.096 4.096 16 C -0.134 4.134 17 C 0.175 3.825 18 N -0.612 5.612 19 C -0.263 4.263 20 H 0.060 0.940 21 C -0.051 4.051 22 N -0.933 5.933 23 Si 0.963 3.037 24 H -0.277 1.277 25 H -0.292 1.292 26 H -0.279 1.279 27 C 0.150 3.850 28 C -0.126 4.126 29 C 0.098 3.902 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.096 0.904 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.096 0.904 36 H 0.049 0.951 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.049 0.951 42 H 0.080 0.920 43 H 0.056 0.944 44 H 0.087 0.913 45 H 0.068 0.932 46 H 0.044 0.956 47 H 0.044 0.956 48 H -0.006 1.006 49 H 0.249 0.751 50 H 0.010 0.990 51 H 0.044 0.956 52 H 0.061 0.939 53 H 0.103 0.897 54 H 0.093 0.907 55 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.638 -22.800 -2.880 28.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.029 4.029 3 O -0.315 6.315 4 C 0.014 3.986 5 H 0.135 0.865 6 C -0.228 4.228 7 C 0.295 3.705 8 O -0.460 6.460 9 N -0.338 5.338 10 C -0.006 4.006 11 C -0.163 4.163 12 C -0.088 4.088 13 C -0.104 4.104 14 H 0.069 0.931 15 C -0.133 4.133 16 C -0.173 4.173 17 C 0.049 3.951 18 N -0.335 5.335 19 C -0.393 4.393 20 H 0.078 0.922 21 C -0.246 4.246 22 N -0.579 5.579 23 Si 0.791 3.209 24 H -0.202 1.202 25 H -0.218 1.218 26 H -0.206 1.206 27 C 0.024 3.976 28 C -0.164 4.164 29 C -0.023 4.023 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.115 0.885 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.115 0.885 36 H 0.069 0.931 37 H 0.108 0.892 38 H 0.103 0.897 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.068 0.932 42 H 0.098 0.902 43 H 0.075 0.925 44 H 0.105 0.895 45 H 0.087 0.913 46 H 0.063 0.937 47 H 0.063 0.937 48 H 0.012 0.988 49 H 0.058 0.942 50 H 0.028 0.972 51 H 0.063 0.937 52 H 0.079 0.921 53 H 0.121 0.879 54 H 0.111 0.889 55 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -18.043 -22.120 -2.737 28.677 hybrid contribution 0.717 1.628 -0.104 1.782 sum -17.326 -20.492 -2.841 26.985 Atomic orbital electron populations 1.21775 0.93371 1.03466 1.02306 1.22848 0.96185 0.82178 1.01701 1.88044 1.19465 1.28759 1.95196 1.22005 0.83344 0.95496 0.97727 0.86547 1.22343 1.02552 1.04393 0.93553 1.21125 0.81941 0.89053 0.78355 1.90675 1.52116 1.45549 1.57631 1.48206 1.07928 1.24347 1.53314 1.21560 0.97205 0.87314 0.94563 1.21921 0.95083 0.98600 1.00665 1.21048 0.92925 0.95213 0.99658 1.21473 0.94814 0.95655 0.98418 0.93129 1.21462 0.94169 0.97297 1.00401 1.21964 0.98871 0.97766 0.98698 1.20499 0.89968 0.89929 0.94656 1.44301 1.14212 1.03111 1.71855 1.19416 0.93119 0.85520 1.41245 0.92215 1.25760 0.97089 1.01266 1.00493 1.70187 1.01352 1.40555 1.45787 0.85410 0.76429 0.80263 0.78786 1.20249 1.21832 1.20567 1.21117 0.87993 0.94654 0.93791 1.22018 0.98166 0.97839 0.98349 1.22222 0.87717 0.90416 1.01980 0.93170 0.92557 0.88514 0.91034 0.91923 0.88547 0.93146 0.89185 0.89720 0.91387 0.91195 0.93173 0.90195 0.92509 0.89507 0.91313 0.93696 0.93742 0.98826 0.94151 0.97184 0.93715 0.92062 0.87918 0.88926 0.87004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 10.28 71.98 0.74 -1.05 16 2 C 0.05 0.58 6.47 71.98 0.47 1.04 16 3 O -0.40 -8.46 9.57 -130.43 -1.25 -9.70 16 4 C 0.08 1.25 2.28 29.85 0.07 1.32 16 5 H 0.12 1.09 6.96 -2.39 -0.02 1.08 16 6 C -0.17 -2.17 9.08 71.98 0.65 -1.51 16 7 C 0.51 12.49 7.00 87.66 0.61 13.10 16 8 O -0.58 -20.61 15.99 15.53 0.25 -20.36 16 9 N -0.60 -11.99 2.97 -818.90 -2.43 -14.42 16 10 C 0.12 2.63 6.44 86.36 0.56 3.18 16 11 C -0.12 -3.04 5.05 30.67 0.15 -2.89 16 12 C -0.07 -1.51 1.74 -10.77 -0.02 -1.53 16 13 C -0.08 -2.52 1.92 -10.72 -0.02 -2.54 16 14 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 15 C -0.10 -2.69 4.86 30.62 0.15 -2.54 16 16 C -0.13 -4.80 6.07 30.53 0.19 -4.62 16 17 C 0.18 8.46 5.28 86.22 0.46 8.92 16 18 N -0.61 -31.01 3.00 -699.89 -2.10 -33.11 16 19 C -0.26 -14.80 9.57 84.03 0.80 -14.00 16 20 H 0.06 3.33 7.89 -2.91 -0.02 3.30 16 21 C -0.05 -2.89 4.89 84.86 0.41 -2.47 16 22 N -0.93 -56.08 11.28 21.65 0.24 -55.84 16 23 Si 0.96 45.85 29.59 68.60 2.03 47.88 16 24 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 25 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 26 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 27 C 0.15 6.07 5.27 86.36 0.46 6.53 16 28 C -0.13 -1.89 5.05 30.67 0.15 -1.74 16 29 C 0.10 1.16 5.59 86.37 0.48 1.64 16 30 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.07 0.57 8.02 -2.39 -0.02 0.55 16 34 H 0.06 0.59 8.08 -2.39 -0.02 0.57 16 35 H 0.10 0.71 8.02 -2.39 -0.02 0.69 16 36 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 37 H 0.09 0.91 6.11 -2.39 -0.01 0.89 16 38 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.07 1.87 7.00 -2.39 -0.02 1.85 16 40 H 0.07 1.88 6.49 -2.39 -0.02 1.86 16 41 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 42 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.09 1.80 6.33 -2.39 -0.02 1.78 16 45 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 46 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 47 H 0.04 2.46 6.11 -2.38 -0.01 2.44 16 48 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 49 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 50 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 51 H 0.04 1.85 6.52 -2.39 -0.02 1.83 16 52 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 53 H 0.10 1.18 6.33 -2.39 -0.02 1.16 16 54 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 55 H 0.11 0.74 4.44 -2.39 -0.01 0.73 16 Total: -1.00 -77.20 409.31 3.90 -73.30 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: 0.84 Total: 11.40 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: 6.31 Total: 0.85 kcal Atomic # 7 Polarization: -99.08 SS G_CDS: -4.29 Total: -103.37 kcal Atomic # 8 Polarization: -29.06 SS G_CDS: -1.00 Total: -30.06 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -77.20 3.90 -73.30 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674504379.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.562 kcal (2) G-P(sol) polarization free energy of solvation -77.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds