Wall clock time and date at job start Tue Mar 31 2020 21:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42897 * 109.47170 * 2 1 4 4 C 1.42903 * 113.99993 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.47209 * 329.99929 * 4 3 2 6 6 C 1.53007 * 109.47027 * 90.00170 * 4 3 2 7 7 C 1.50698 * 109.47330 * 209.99864 * 4 3 2 8 8 O 1.21280 * 119.99901 * 344.63239 * 7 4 3 9 9 N 1.34776 * 120.00221 * 164.62392 * 7 4 3 10 10 C 1.46920 * 120.63170 * 184.75980 * 9 7 4 11 11 C 1.53199 * 108.77736 * 233.63509 * 10 9 7 12 12 C 1.53039 * 109.30718 * 305.36593 * 11 10 9 13 13 C 1.53005 * 109.45731 * 181.38461 * 12 11 10 14 14 H 1.08993 * 109.49829 * 300.03662 * 13 12 11 15 15 C 1.53044 * 109.52164 * 60.11690 * 13 12 11 16 16 C 1.53044 * 109.53636 * 181.33390 * 15 13 12 17 17 C 1.53199 * 109.31152 * 298.63509 * 16 15 13 18 18 N 1.47204 * 108.85430 * 54.65225 * 17 16 15 19 19 C 1.36934 * 120.81502 * 126.33729 * 18 17 16 20 20 H 1.08002 * 120.00030 * 210.74289 * 19 18 17 21 21 C 1.38812 * 120.00224 * 30.74018 * 19 18 17 22 22 N 1.31622 * 119.99738 * 10.38273 * 21 19 18 23 23 Si 1.86801 * 120.00042 * 190.38913 * 21 19 18 24 24 H 1.48495 * 109.47142 * 59.99592 * 23 21 19 25 25 H 1.48501 * 109.46648 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.46825 * 299.99449 * 23 21 19 27 27 C 1.46928 * 118.55472 * 306.47502 * 18 17 16 28 28 C 1.53034 * 109.53005 * 61.37193 * 12 11 10 29 29 C 1.46920 * 120.62916 * 4.78665 * 9 7 4 30 30 H 1.09000 * 109.47054 * 60.00221 * 1 2 3 31 31 H 1.08999 * 109.46889 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47177 * 299.99854 * 1 2 3 33 33 H 1.09007 * 109.47161 * 239.99875 * 2 1 3 34 34 H 1.09000 * 109.47295 * 120.00524 * 2 1 3 35 35 H 1.09003 * 109.46646 * 184.47303 * 6 4 3 36 36 H 1.08998 * 109.46721 * 304.46952 * 6 4 3 37 37 H 1.08994 * 109.47071 * 64.47214 * 6 4 3 38 38 H 1.08994 * 109.58649 * 113.84745 * 10 9 7 39 39 H 1.09002 * 109.58926 * 353.41891 * 10 9 7 40 40 H 1.08994 * 109.49489 * 185.41507 * 11 10 9 41 41 H 1.08996 * 109.52164 * 65.32728 * 11 10 9 42 42 H 1.08999 * 109.46318 * 301.35253 * 12 11 10 43 43 H 1.08995 * 109.45937 * 301.35373 * 15 13 12 44 44 H 1.09002 * 109.46072 * 61.33028 * 15 13 12 45 45 H 1.08996 * 109.49991 * 58.58352 * 16 15 13 46 46 H 1.08998 * 109.49852 * 178.68536 * 16 15 13 47 47 H 1.09000 * 109.58812 * 174.42100 * 17 16 15 48 48 H 1.08994 * 109.58825 * 294.70800 * 17 16 15 49 49 H 0.97001 * 119.99702 * 180.02562 * 22 21 19 50 50 H 1.08998 * 109.58755 * 293.68311 * 27 18 17 51 51 H 1.09002 * 109.58935 * 173.39898 * 27 18 17 52 52 H 1.08997 * 109.49842 * 58.57954 * 28 12 11 53 53 H 1.09003 * 109.50185 * 178.67294 * 28 12 11 54 54 H 1.08997 * 109.59036 * 246.15495 * 29 9 7 55 55 H 1.08999 * 109.58882 * 6.57692 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8632 0.6016 0.5147 6 6 3.9399 1.5002 -1.4418 7 6 3.8343 2.7264 0.7109 8 8 3.0107 3.5908 0.9240 9 7 5.1102 2.8984 1.1096 10 6 5.4968 4.0791 1.8938 11 6 6.6690 4.7740 1.1936 12 6 7.7993 3.7651 0.9777 13 6 8.9853 4.4638 0.3096 14 1 8.6730 4.8715 -0.6517 15 6 9.4828 5.5984 1.2082 16 6 10.6478 6.3187 0.5254 17 6 11.7990 5.3308 0.3119 18 7 11.2933 4.1641 -0.4297 19 6 11.9020 3.7487 -1.5838 20 1 11.3205 3.2743 -2.3605 21 6 13.2664 3.9374 -1.7556 22 7 14.0102 4.3241 -0.7409 23 14 14.0469 3.6427 -3.4270 24 1 13.4304 4.5498 -4.4281 25 1 15.5050 3.9125 -3.3468 26 1 13.8258 2.2321 -3.8347 27 6 10.1177 3.4549 0.0937 28 6 7.3058 2.6282 0.0800 29 6 6.1410 1.9090 0.7676 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 5.0299 1.5061 -1.4423 36 1 3.5811 0.6218 -1.9782 37 1 3.5714 2.4011 -1.9322 38 1 5.7999 3.7701 2.8941 39 1 4.6527 4.7655 1.9611 40 1 7.0279 5.5953 1.8137 41 1 6.3392 5.1625 0.2302 42 1 8.1121 3.3587 1.9395 43 1 8.6717 6.3050 1.3836 44 1 9.8184 5.1871 2.1603 45 1 10.3198 6.7089 -0.4380 46 1 10.9864 7.1413 1.1554 47 1 12.5915 5.8116 -0.2617 48 1 12.1897 5.0106 1.2777 49 1 14.9636 4.4563 -0.8611 50 1 10.3697 2.9799 1.0418 51 1 9.7998 2.6966 -0.6218 52 1 6.9696 3.0369 -0.8729 53 1 8.1181 1.9222 -0.0928 54 1 6.4967 1.4229 1.6761 55 1 5.7220 1.1633 0.0920 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674504381.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:30 Heat of formation + Delta-G solvation = -94.234484 kcal Electronic energy + Delta-G solvation = -31022.009800 eV Core-core repulsion = 27058.105800 eV Total energy + Delta-G solvation = -3963.903999 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.57124 -40.01021 -38.85183 -37.89437 -35.59903 -34.08653 -33.40414 -32.45361 -31.85992 -30.92981 -30.42163 -27.23631 -26.62986 -25.08281 -24.52961 -23.61227 -23.16261 -22.81403 -21.51418 -20.56650 -19.96337 -18.68762 -18.40107 -17.82603 -16.90617 -16.84515 -16.62708 -16.21223 -15.82210 -15.57103 -15.35635 -15.14203 -15.04157 -14.74783 -14.70037 -14.30456 -14.19499 -14.07557 -13.93111 -13.58185 -13.42091 -13.32797 -13.22373 -13.00112 -12.92253 -12.81771 -12.71918 -12.40733 -12.30007 -12.18041 -12.14344 -12.03898 -11.98716 -11.76419 -11.67951 -11.45780 -11.32535 -11.00773 -10.89714 -10.69450 -10.51572 -10.44802 -9.65976 -8.57837 -7.83103 -5.33433 1.46665 1.48988 1.49801 1.55311 1.73962 2.51840 2.81795 3.31443 3.41518 3.65525 3.75938 3.85166 3.90210 3.93605 3.98994 4.14622 4.19501 4.23384 4.29837 4.32384 4.37022 4.46344 4.48468 4.48997 4.56219 4.60576 4.64701 4.73233 4.79537 4.81891 4.87187 4.89707 4.93583 4.99030 5.02067 5.04453 5.11613 5.14750 5.18581 5.20620 5.25998 5.27288 5.35600 5.42776 5.43805 5.57931 5.61033 5.63699 5.72796 5.84699 6.11266 6.38392 6.44296 7.10463 7.18811 7.90748 8.43509 9.21879 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.017907 B = 0.002389 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.279296 B =11717.336284 C =12885.170507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.046 3.954 3 O -0.393 6.393 4 C 0.074 3.926 5 H 0.114 0.886 6 C -0.171 4.171 7 C 0.509 3.491 8 O -0.577 6.577 9 N -0.604 5.604 10 C 0.113 3.887 11 C -0.120 4.120 12 C -0.070 4.070 13 C -0.084 4.084 14 H 0.050 0.950 15 C -0.099 4.099 16 C -0.135 4.135 17 C 0.175 3.825 18 N -0.613 5.613 19 C -0.257 4.257 20 H 0.065 0.935 21 C -0.054 4.054 22 N -0.937 5.937 23 Si 0.967 3.033 24 H -0.280 1.280 25 H -0.296 1.296 26 H -0.273 1.273 27 C 0.152 3.848 28 C -0.130 4.130 29 C 0.100 3.900 30 H 0.056 0.944 31 H 0.096 0.904 32 H 0.051 0.949 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.049 0.951 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.051 0.949 42 H 0.080 0.920 43 H 0.074 0.926 44 H 0.055 0.945 45 H 0.043 0.957 46 H 0.063 0.937 47 H 0.049 0.951 48 H -0.006 1.006 49 H 0.248 0.752 50 H 0.012 0.988 51 H 0.056 0.944 52 H 0.059 0.941 53 H 0.086 0.914 54 H 0.092 0.908 55 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.693 -9.287 4.339 23.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.030 4.030 3 O -0.312 6.312 4 C 0.013 3.987 5 H 0.132 0.868 6 C -0.228 4.228 7 C 0.298 3.702 8 O -0.457 6.457 9 N -0.337 5.337 10 C -0.009 4.009 11 C -0.158 4.158 12 C -0.089 4.089 13 C -0.104 4.104 14 H 0.068 0.932 15 C -0.137 4.137 16 C -0.174 4.174 17 C 0.049 3.951 18 N -0.336 5.336 19 C -0.388 4.388 20 H 0.083 0.917 21 C -0.249 4.249 22 N -0.584 5.584 23 Si 0.795 3.205 24 H -0.206 1.206 25 H -0.222 1.222 26 H -0.198 1.198 27 C 0.027 3.973 28 C -0.168 4.168 29 C -0.021 4.021 30 H 0.075 0.925 31 H 0.114 0.886 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.068 0.932 38 H 0.104 0.896 39 H 0.091 0.909 40 H 0.105 0.895 41 H 0.070 0.930 42 H 0.098 0.902 43 H 0.093 0.907 44 H 0.074 0.926 45 H 0.062 0.938 46 H 0.082 0.918 47 H 0.068 0.932 48 H 0.012 0.988 49 H 0.057 0.943 50 H 0.030 0.970 51 H 0.074 0.926 52 H 0.078 0.922 53 H 0.104 0.896 54 H 0.110 0.890 55 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -22.079 -8.675 4.447 24.135 hybrid contribution 1.194 0.134 -0.852 1.473 sum -20.885 -8.541 3.595 22.848 Atomic orbital electron populations 1.21769 0.93187 1.03475 1.02391 1.22849 0.96296 0.82227 1.01618 1.88031 1.19342 1.28682 1.95183 1.21995 0.83375 0.95766 0.97596 0.86844 1.22334 1.02803 1.03852 0.93828 1.21002 0.81990 0.88896 0.78321 1.90667 1.51941 1.45574 1.57471 1.48189 1.07598 1.24325 1.53629 1.21643 0.97507 0.87087 0.94663 1.21929 0.94449 0.98519 1.00920 1.21042 0.93286 0.95267 0.99270 1.21483 0.94612 0.96207 0.98095 0.93196 1.21468 0.96994 0.97291 0.97914 1.22045 0.97496 0.98248 0.99571 1.20634 0.93978 0.87184 0.93258 1.44342 1.32333 1.30517 1.26430 1.19452 0.90208 1.35093 0.94034 0.91706 1.25899 0.96861 1.01623 1.00497 1.70143 1.04914 1.52536 1.30784 0.85349 0.76761 0.78399 0.79976 1.20620 1.22181 1.19847 1.21108 0.86646 0.93434 0.96114 1.21997 0.97928 0.98211 0.98683 1.22157 0.87719 0.90495 1.01719 0.92511 0.88571 0.92991 0.91264 0.91967 0.89038 0.89065 0.93195 0.89587 0.90881 0.89519 0.93020 0.90190 0.90743 0.92595 0.93849 0.91836 0.93244 0.98818 0.94262 0.96996 0.92581 0.92222 0.89603 0.89010 0.87427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 10.28 71.98 0.74 -1.11 16 2 C 0.05 0.61 6.47 71.98 0.47 1.08 16 3 O -0.39 -8.64 9.57 -130.41 -1.25 -9.89 16 4 C 0.07 1.31 2.28 29.85 0.07 1.38 16 5 H 0.11 1.27 6.97 -2.39 -0.02 1.25 16 6 C -0.17 -2.50 9.18 71.98 0.66 -1.84 16 7 C 0.51 12.54 7.01 87.66 0.61 13.16 16 8 O -0.58 -19.88 15.99 15.54 0.25 -19.63 16 9 N -0.60 -11.97 2.97 -818.93 -2.43 -14.41 16 10 C 0.11 2.29 6.44 86.37 0.56 2.84 16 11 C -0.12 -2.48 5.05 30.67 0.15 -2.33 16 12 C -0.07 -1.52 1.74 -10.77 -0.02 -1.54 16 13 C -0.08 -2.54 1.92 -10.71 -0.02 -2.56 16 14 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 15 C -0.10 -3.02 4.86 30.62 0.15 -2.87 16 16 C -0.13 -5.06 6.08 30.68 0.19 -4.87 16 17 C 0.18 8.52 5.28 86.31 0.46 8.97 16 18 N -0.61 -30.36 3.00 -698.37 -2.10 -32.46 16 19 C -0.26 -14.01 9.59 84.03 0.81 -13.20 16 20 H 0.07 3.41 7.85 -2.91 -0.02 3.39 16 21 C -0.05 -3.00 5.07 84.86 0.43 -2.57 16 22 N -0.94 -55.57 11.00 21.65 0.24 -55.34 16 23 Si 0.97 44.69 29.57 68.60 2.03 46.71 16 24 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 25 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 26 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 27 C 0.15 5.86 5.27 86.36 0.45 6.31 16 28 C -0.13 -2.46 5.05 30.67 0.15 -2.30 16 29 C 0.10 1.43 5.74 86.36 0.50 1.92 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.07 0.65 7.79 -2.38 -0.02 0.63 16 34 H 0.06 0.65 8.08 -2.39 -0.02 0.63 16 35 H 0.09 1.09 5.99 -2.39 -0.01 1.08 16 36 H 0.09 0.97 7.79 -2.39 -0.02 0.95 16 37 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.07 1.77 7.00 -2.39 -0.02 1.75 16 40 H 0.09 1.67 6.34 -2.39 -0.02 1.66 16 41 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.07 1.89 6.34 -2.39 -0.02 1.87 16 44 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 46 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 47 H 0.05 2.76 6.06 -2.39 -0.01 2.74 16 48 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 49 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 50 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 51 H 0.06 2.08 6.51 -2.39 -0.02 2.06 16 52 H 0.06 1.24 8.14 -2.39 -0.02 1.23 16 53 H 0.09 1.65 6.49 -2.39 -0.02 1.64 16 54 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 55 H 0.11 1.06 4.25 -2.39 -0.01 1.05 16 Total: -1.00 -73.75 408.59 3.94 -69.81 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: 0.85 Total: 14.73 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: 6.35 Total: 0.46 kcal Atomic # 7 Polarization: -97.91 SS G_CDS: -4.29 Total: -102.20 kcal Atomic # 8 Polarization: -28.52 SS G_CDS: -1.00 Total: -29.52 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Total: -73.75 3.94 -69.81 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674504381.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.423 kcal (2) G-P(sol) polarization free energy of solvation -73.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds