Wall clock time and date at job start Tue Mar 31 2020 21:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42898 * 109.46826 * 2 1 4 4 C 1.42908 * 113.99633 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.46854 * 30.00624 * 4 3 2 6 6 C 1.52991 * 109.47520 * 270.00215 * 4 3 2 7 7 C 1.50702 * 109.46632 * 150.00156 * 4 3 2 8 8 O 1.21274 * 120.00244 * 5.00183 * 7 4 3 9 9 N 1.34779 * 119.99425 * 185.00347 * 7 4 3 10 10 C 1.46928 * 120.62489 * 180.02562 * 9 7 4 11 11 C 1.53194 * 108.77240 * 233.58420 * 10 9 7 12 12 C 1.53038 * 109.31466 * 305.36644 * 11 10 9 13 13 C 1.52997 * 109.46292 * 181.38962 * 12 11 10 14 14 H 1.09007 * 109.49595 * 300.03563 * 13 12 11 15 15 C 1.53044 * 109.52480 * 60.11549 * 13 12 11 16 16 C 1.53045 * 109.53559 * 181.33496 * 15 13 12 17 17 C 1.53192 * 109.31492 * 298.63681 * 16 15 13 18 18 N 1.47201 * 108.85247 * 54.65007 * 17 16 15 19 19 C 1.36941 * 120.81053 * 126.34026 * 18 17 16 20 20 H 1.08010 * 119.99649 * 207.53228 * 19 18 17 21 21 C 1.38804 * 120.00378 * 27.53087 * 19 18 17 22 22 N 1.31624 * 120.00025 * 17.26718 * 21 19 18 23 23 Si 1.86801 * 120.00311 * 197.26803 * 21 19 18 24 24 H 1.48490 * 109.47145 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.46826 * 120.00101 * 23 21 19 26 26 H 1.48498 * 109.47107 * 239.99663 * 23 21 19 27 27 C 1.46928 * 118.56064 * 306.47866 * 18 17 16 28 28 C 1.53039 * 109.52798 * 61.37334 * 12 11 10 29 29 C 1.46920 * 120.63220 * 359.97438 * 9 7 4 30 30 H 1.09005 * 109.46882 * 299.99825 * 1 2 3 31 31 H 1.08997 * 109.47287 * 59.99566 * 1 2 3 32 32 H 1.09002 * 109.47147 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47257 * 240.00071 * 2 1 3 34 34 H 1.09004 * 109.47405 * 120.00064 * 2 1 3 35 35 H 1.09008 * 109.47242 * 300.00345 * 6 4 3 36 36 H 1.09003 * 109.47435 * 59.99564 * 6 4 3 37 37 H 1.09001 * 109.47648 * 180.02562 * 6 4 3 38 38 H 1.09002 * 109.58410 * 113.80178 * 10 9 7 39 39 H 1.09000 * 109.70552 * 353.44252 * 10 9 7 40 40 H 1.09006 * 109.49757 * 185.41674 * 11 10 9 41 41 H 1.08991 * 109.52487 * 65.33627 * 11 10 9 42 42 H 1.09006 * 109.45861 * 301.36038 * 12 11 10 43 43 H 1.09001 * 109.46096 * 301.35307 * 15 13 12 44 44 H 1.08996 * 109.45999 * 61.33363 * 15 13 12 45 45 H 1.09000 * 109.49621 * 58.58643 * 16 15 13 46 46 H 1.08995 * 109.49793 * 178.68279 * 16 15 13 47 47 H 1.08993 * 109.58703 * 174.42473 * 17 16 15 48 48 H 1.09001 * 109.58389 * 294.71047 * 17 16 15 49 49 H 0.96996 * 120.00327 * 179.97438 * 22 21 19 50 50 H 1.08998 * 109.58611 * 293.68316 * 27 18 17 51 51 H 1.09000 * 109.59015 * 173.39820 * 27 18 17 52 52 H 1.08997 * 109.49565 * 58.57759 * 28 12 11 53 53 H 1.08996 * 109.50208 * 178.67972 * 28 12 11 54 54 H 1.09000 * 109.58632 * 246.19685 * 29 9 7 55 55 H 1.08993 * 109.58966 * 6.62973 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8635 0.6015 -0.5130 6 6 3.9388 1.5005 1.4432 7 6 3.8347 2.7263 -0.7098 8 8 2.9864 3.5046 -1.0912 9 7 5.1386 2.9937 -0.9214 10 6 5.5479 4.2243 -1.6120 11 6 6.4595 3.8513 -2.7853 12 6 7.6242 3.0019 -2.2713 13 6 8.5556 2.6564 -3.4348 14 1 8.0028 2.0970 -4.1896 15 6 9.1020 3.9455 -4.0528 16 6 10.0074 3.6013 -5.2377 17 6 11.1905 2.7623 -4.7444 18 7 10.6730 1.5900 -4.0201 19 6 11.0657 0.3238 -4.3633 20 1 10.4096 -0.5139 -4.1781 21 6 12.3069 0.1170 -4.9493 22 7 13.2348 1.0472 -4.8710 23 14 12.6604 -1.4815 -5.8490 24 1 11.4617 -2.3561 -5.7937 25 1 12.9951 -1.1884 -7.2658 26 1 13.8057 -2.1707 -5.2022 27 6 9.7221 1.8067 -2.9211 28 6 7.0821 1.7118 -1.6517 29 6 6.1778 2.0608 -0.4648 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.5061 2.3591 1.9568 36 1 3.6466 0.5847 1.9571 37 1 5.0253 1.5870 1.4436 38 1 6.0890 4.8692 -0.9195 39 1 4.6670 4.7466 -1.9853 40 1 6.8475 4.7591 -3.2475 41 1 5.8915 3.2825 -3.5214 42 1 8.1773 3.5623 -1.5175 43 1 8.2725 4.5632 -4.3971 44 1 9.6757 4.4922 -3.3045 45 1 9.4410 3.0330 -5.9754 46 1 10.3775 4.5205 -5.6918 47 1 11.7843 2.4315 -5.5964 48 1 11.8104 3.3615 -4.0775 49 1 14.1023 0.9026 -5.2802 50 1 10.2210 2.3272 -2.1036 51 1 9.3468 0.8463 -2.5678 52 1 6.5078 1.1631 -2.3982 53 1 7.9131 1.0966 -1.3069 54 1 6.7701 2.5298 0.3209 55 1 5.7113 1.1534 -0.0814 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674504383.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:35 Heat of formation + Delta-G solvation = -92.791750 kcal Electronic energy + Delta-G solvation = -31012.050383 eV Core-core repulsion = 27048.208945 eV Total energy + Delta-G solvation = -3963.841438 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.57707 -40.01765 -38.85024 -37.90226 -35.63180 -34.14113 -33.36482 -32.46526 -31.87005 -30.94916 -30.35391 -27.23608 -26.67046 -25.03445 -24.60305 -23.65510 -23.13602 -22.79416 -21.44922 -20.56951 -20.11670 -18.67569 -18.34435 -17.78095 -17.07823 -16.83318 -16.54151 -16.20890 -15.79130 -15.59045 -15.44773 -15.01078 -14.98088 -14.79378 -14.67792 -14.47023 -14.13744 -14.11530 -13.78300 -13.67827 -13.50895 -13.32730 -13.18808 -13.03419 -12.99216 -12.80621 -12.66186 -12.37789 -12.29010 -12.17693 -12.15367 -12.03910 -11.96358 -11.76607 -11.66437 -11.46917 -11.33106 -11.00663 -10.90224 -10.70315 -10.51489 -10.43443 -9.66417 -8.64160 -7.85269 -5.29527 1.45187 1.47625 1.51581 1.57490 1.74077 2.51722 2.80748 3.28781 3.42039 3.64508 3.75713 3.84268 3.90290 3.93372 3.99731 4.14503 4.18480 4.22871 4.30100 4.31637 4.36152 4.45433 4.47553 4.49002 4.57095 4.61918 4.64630 4.75605 4.80717 4.81672 4.86895 4.89275 4.93556 4.97706 5.01076 5.03706 5.12046 5.14129 5.16489 5.22517 5.25330 5.26366 5.34651 5.42038 5.42640 5.56245 5.60699 5.63277 5.71369 5.82458 6.10556 6.38224 6.41146 7.10914 7.16760 7.90151 8.41825 9.20913 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015607 B = 0.002447 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.626799 B =11442.109087 C =12544.815228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.046 3.954 3 O -0.392 6.392 4 C 0.070 3.930 5 H 0.107 0.893 6 C -0.172 4.172 7 C 0.509 3.491 8 O -0.578 6.578 9 N -0.602 5.602 10 C 0.113 3.887 11 C -0.120 4.120 12 C -0.070 4.070 13 C -0.084 4.084 14 H 0.050 0.950 15 C -0.099 4.099 16 C -0.134 4.134 17 C 0.174 3.826 18 N -0.613 5.613 19 C -0.255 4.255 20 H 0.067 0.933 21 C -0.055 4.055 22 N -0.936 5.936 23 Si 0.963 3.037 24 H -0.266 1.266 25 H -0.293 1.293 26 H -0.292 1.292 27 C 0.152 3.848 28 C -0.131 4.131 29 C 0.101 3.899 30 H 0.059 0.941 31 H 0.049 0.951 32 H 0.095 0.905 33 H 0.055 0.945 34 H 0.072 0.928 35 H 0.056 0.944 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.087 0.913 41 H 0.051 0.949 42 H 0.080 0.920 43 H 0.075 0.925 44 H 0.056 0.944 45 H 0.044 0.956 46 H 0.064 0.936 47 H 0.047 0.953 48 H -0.005 1.005 49 H 0.248 0.752 50 H 0.012 0.988 51 H 0.056 0.944 52 H 0.058 0.942 53 H 0.085 0.915 54 H 0.094 0.906 55 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.455 0.746 12.698 23.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.029 4.029 3 O -0.311 6.311 4 C 0.009 3.991 5 H 0.124 0.876 6 C -0.229 4.229 7 C 0.297 3.703 8 O -0.457 6.457 9 N -0.336 5.336 10 C -0.009 4.009 11 C -0.158 4.158 12 C -0.089 4.089 13 C -0.104 4.104 14 H 0.069 0.931 15 C -0.137 4.137 16 C -0.173 4.173 17 C 0.048 3.952 18 N -0.336 5.336 19 C -0.385 4.385 20 H 0.084 0.916 21 C -0.250 4.250 22 N -0.583 5.583 23 Si 0.792 3.208 24 H -0.190 1.190 25 H -0.220 1.220 26 H -0.219 1.219 27 C 0.027 3.973 28 C -0.169 4.169 29 C -0.020 4.020 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.113 0.887 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.108 0.892 37 H 0.115 0.885 38 H 0.103 0.897 39 H 0.091 0.909 40 H 0.105 0.895 41 H 0.070 0.930 42 H 0.098 0.902 43 H 0.093 0.907 44 H 0.074 0.926 45 H 0.063 0.937 46 H 0.082 0.918 47 H 0.066 0.934 48 H 0.013 0.987 49 H 0.057 0.943 50 H 0.030 0.970 51 H 0.074 0.926 52 H 0.077 0.923 53 H 0.104 0.896 54 H 0.112 0.888 55 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -19.881 1.281 12.454 23.494 hybrid contribution 0.956 -0.841 -0.951 1.589 sum -18.925 0.440 11.502 22.150 Atomic orbital electron populations 1.21765 0.93104 1.03449 1.02447 1.22827 0.96370 0.82301 1.01438 1.88019 1.19392 1.28512 1.95197 1.22001 0.83358 0.95605 0.98094 0.87554 1.22407 1.03190 1.04201 0.93108 1.20996 0.82200 0.88109 0.78967 1.90667 1.51206 1.50937 1.52919 1.48171 1.05162 1.22960 1.57328 1.21631 0.98724 0.85997 0.94524 1.21931 0.95859 1.00937 0.97070 1.21049 0.94796 0.96339 0.96725 1.21482 0.95542 0.96291 0.97079 0.93136 1.21471 0.98439 0.96934 0.96835 1.22029 0.97992 0.99006 0.98246 1.20631 0.92835 0.86774 0.94925 1.44401 1.51005 1.02447 1.35752 1.19523 0.97474 0.86073 1.35445 0.91568 1.25763 0.95126 1.00678 1.03405 1.70196 1.03975 1.36246 1.47875 0.85267 0.77734 0.79942 0.77899 1.18988 1.22010 1.21915 1.21106 0.89571 0.97584 0.89066 1.22025 0.99518 0.97643 0.97732 1.22234 0.89157 0.93733 0.96894 0.92142 0.93182 0.88680 0.92633 0.91004 0.92521 0.89221 0.88450 0.89682 0.90878 0.89461 0.92973 0.90160 0.90665 0.92572 0.93743 0.91756 0.93436 0.98728 0.94274 0.96970 0.92595 0.92347 0.89636 0.88783 0.87350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 10.28 71.98 0.74 -1.24 16 2 C 0.05 0.67 6.47 71.98 0.47 1.14 16 3 O -0.39 -8.80 9.53 -129.99 -1.24 -10.03 16 4 C 0.07 1.26 2.30 29.85 0.07 1.33 16 5 H 0.11 1.42 7.08 -2.39 -0.02 1.40 16 6 C -0.17 -2.07 9.10 71.98 0.65 -1.41 16 7 C 0.51 12.50 7.12 87.66 0.62 13.13 16 8 O -0.58 -19.86 15.92 15.98 0.25 -19.60 16 9 N -0.60 -11.85 2.97 -818.81 -2.43 -14.28 16 10 C 0.11 2.28 6.43 86.36 0.56 2.83 16 11 C -0.12 -2.44 5.05 30.67 0.15 -2.29 16 12 C -0.07 -1.52 1.74 -10.77 -0.02 -1.53 16 13 C -0.08 -2.51 1.92 -10.72 -0.02 -2.54 16 14 H 0.05 1.68 8.14 -2.38 -0.02 1.67 16 15 C -0.10 -2.98 4.86 30.62 0.15 -2.83 16 16 C -0.13 -4.97 6.08 30.67 0.19 -4.79 16 17 C 0.17 8.41 5.33 86.31 0.46 8.87 16 18 N -0.61 -30.22 3.01 -698.40 -2.10 -32.32 16 19 C -0.25 -13.84 9.59 84.03 0.81 -13.03 16 20 H 0.07 3.49 7.89 -2.91 -0.02 3.47 16 21 C -0.05 -3.05 4.92 84.86 0.42 -2.64 16 22 N -0.94 -55.57 11.18 21.65 0.24 -55.33 16 23 Si 0.96 44.70 29.59 68.60 2.03 46.72 16 24 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 25 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 26 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 27 C 0.15 5.81 5.27 86.36 0.45 6.26 16 28 C -0.13 -2.46 5.05 30.69 0.15 -2.30 16 29 C 0.10 1.42 4.97 86.38 0.43 1.85 16 30 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 31 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.06 0.73 8.09 -2.39 -0.02 0.71 16 34 H 0.07 0.71 7.87 -2.39 -0.02 0.69 16 35 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 36 H 0.09 0.75 7.87 -2.39 -0.02 0.73 16 37 H 0.10 0.81 5.41 -2.39 -0.01 0.80 16 38 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.07 1.75 7.01 -2.39 -0.02 1.74 16 40 H 0.09 1.65 6.34 -2.38 -0.02 1.64 16 41 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 43 H 0.07 1.87 6.34 -2.39 -0.02 1.86 16 44 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 46 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 47 H 0.05 2.63 6.04 -2.39 -0.01 2.62 16 48 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 49 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 50 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 51 H 0.06 2.06 6.50 -2.39 -0.02 2.05 16 52 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 53 H 0.09 1.64 6.49 -2.39 -0.02 1.62 16 54 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 55 H 0.11 1.04 4.66 -2.39 -0.01 1.03 16 Total: -1.00 -73.89 408.01 3.88 -70.00 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: 0.85 Total: 14.03 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: 6.28 Total: 0.81 kcal Atomic # 7 Polarization: -97.64 SS G_CDS: -4.29 Total: -101.93 kcal Atomic # 8 Polarization: -28.65 SS G_CDS: -0.98 Total: -29.64 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Total: -73.89 3.88 -70.00 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674504383.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.788 kcal (2) G-P(sol) polarization free energy of solvation -73.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds