Wall clock time and date at job start Tue Mar 31 2020 22:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42906 * 113.99647 * 2 1 4 4 C 1.53000 * 109.46790 * 179.97438 * 3 2 1 5 5 C 1.50698 * 110.43693 * 294.02219 * 4 3 2 6 6 O 1.21275 * 120.00151 * 108.58200 * 5 4 3 7 7 N 1.34775 * 120.00067 * 288.57714 * 5 4 3 8 8 C 1.46506 * 120.00033 * 4.01262 * 7 5 4 9 9 C 1.46504 * 120.00230 * 184.00820 * 7 5 4 10 10 C 1.52996 * 109.47293 * 240.00109 * 9 7 5 11 11 C 1.52996 * 109.46921 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47288 * 60.00558 * 11 10 9 13 13 N 1.46496 * 109.47485 * 59.99866 * 12 11 10 14 14 C 1.36931 * 120.00434 * 155.00471 * 13 12 11 15 15 H 1.07999 * 119.99923 * 359.97438 * 14 13 12 16 16 C 1.38811 * 120.00315 * 179.97438 * 14 13 12 17 17 N 1.31622 * 119.99950 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00223 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47034 * 60.00059 * 18 16 14 20 20 H 1.48493 * 109.47183 * 180.02562 * 18 16 14 21 21 H 1.48510 * 109.46893 * 300.00192 * 18 16 14 22 22 C 1.53008 * 109.46988 * 299.99613 * 12 11 10 23 23 C 1.52996 * 109.46791 * 60.00082 * 22 12 11 24 24 C 1.54885 * 110.59837 * 56.64371 * 4 3 2 25 25 C 1.54895 * 102.74820 * 156.67166 * 24 4 3 26 26 C 1.54261 * 104.19482 * 322.05754 * 25 24 4 27 27 C 1.53870 * 106.60122 * 23.60940 * 26 25 24 28 28 H 1.09004 * 109.46720 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47197 * 299.99440 * 1 2 3 30 30 H 1.08995 * 109.47456 * 60.00433 * 1 2 3 31 31 H 1.08997 * 109.46800 * 60.00282 * 3 2 1 32 32 H 1.08994 * 109.47194 * 299.99846 * 3 2 1 33 33 H 1.08993 * 109.47229 * 264.34170 * 8 7 5 34 34 H 1.09005 * 109.46929 * 24.34104 * 8 7 5 35 35 H 1.09002 * 109.47346 * 144.33812 * 8 7 5 36 36 H 1.09000 * 109.46817 * 0.02562 * 9 7 5 37 37 H 1.09007 * 109.46891 * 60.00328 * 10 9 7 38 38 H 1.09000 * 109.47623 * 300.00037 * 10 9 7 39 39 H 1.08997 * 109.47334 * 300.00035 * 11 10 9 40 40 H 1.09003 * 109.46808 * 180.02562 * 11 10 9 41 41 H 1.09003 * 109.47357 * 180.02562 * 12 11 10 42 42 H 0.97007 * 119.99544 * 335.00109 * 13 12 11 43 43 H 0.97002 * 119.99717 * 179.97438 * 17 16 14 44 44 H 1.08997 * 109.47283 * 179.97438 * 22 12 11 45 45 H 1.08997 * 109.46971 * 300.00118 * 22 12 11 46 46 H 1.09001 * 109.47515 * 180.02562 * 23 22 12 47 47 H 1.09005 * 109.47633 * 60.00232 * 23 22 12 48 48 H 1.09001 * 110.75622 * 274.98083 * 24 4 3 49 49 H 1.08997 * 110.76045 * 38.35521 * 24 4 3 50 50 H 1.09003 * 110.48900 * 203.37250 * 25 24 4 51 51 H 1.09005 * 110.48652 * 80.73528 * 25 24 4 52 52 H 1.08997 * 110.03192 * 264.32172 * 26 25 24 53 53 H 1.08999 * 110.03133 * 142.89725 * 26 25 24 54 54 H 1.09003 * 110.03251 * 240.71755 * 27 26 25 55 55 H 1.09003 * 110.03617 * 119.28726 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1847 0.0006 5 6 4.0140 0.5704 1.2908 6 8 4.4514 -0.5607 1.2982 7 7 3.9561 1.2779 2.4364 8 6 3.3474 2.6105 2.4443 9 6 4.5017 0.7145 3.6738 10 6 3.3895 0.6067 4.7189 11 6 3.9593 0.0177 6.0109 12 6 5.0697 0.9275 6.5400 13 7 4.5227 2.2594 6.8102 14 6 5.1275 3.0745 7.7293 15 1 6.0076 2.7354 8.2553 16 6 4.6094 4.3367 7.9849 17 7 3.5371 4.7502 7.3434 18 14 5.4341 5.4484 9.2392 19 1 6.8342 5.7133 8.8212 20 1 4.6921 6.7317 9.3270 21 1 5.4313 4.7838 10.5673 22 6 6.1820 1.0354 5.4948 23 6 5.6122 1.6244 4.2028 24 6 4.0161 0.3468 -1.2100 25 6 5.4773 0.8250 -1.3980 26 6 5.4211 2.3381 -1.1027 27 6 4.1864 2.5668 -0.2134 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 1.6885 1.8464 0.8900 32 1 1.6885 1.8464 -0.8899 33 1 4.1253 3.3660 2.3340 34 1 2.6415 2.6925 1.6177 35 1 2.8223 2.7646 3.3871 36 1 4.9094 -0.2762 3.4730 37 1 2.5986 -0.0419 4.3422 38 1 2.9821 1.5976 4.9196 39 1 4.3663 -0.9732 5.8100 40 1 3.1668 -0.0595 6.7554 41 1 5.4759 0.5077 7.4602 42 1 3.7319 2.5638 6.3379 43 1 3.1749 5.6321 7.5223 44 1 6.9729 1.6839 5.8715 45 1 6.5890 0.0444 5.2939 46 1 6.4044 1.7008 3.4580 47 1 5.2052 2.6154 4.4037 48 1 3.9849 -0.7181 -0.9795 49 1 3.4200 0.5692 -2.0950 50 1 5.8080 0.6481 -2.4215 51 1 6.1372 0.3225 -0.6907 52 1 5.3198 2.8966 -2.0332 53 1 6.3233 2.6495 -0.5763 54 1 3.4858 3.2364 -0.7124 55 1 4.4894 2.9893 0.7447 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674796511.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:08 Heat of formation + Delta-G solvation = -89.922208 kcal Electronic energy + Delta-G solvation = -32425.060842 eV Core-core repulsion = 28461.343836 eV Total energy + Delta-G solvation = -3963.717005 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.03413 -40.01539 -38.66996 -37.71309 -36.71576 -34.94880 -32.69561 -31.68217 -31.55665 -29.89582 -29.14517 -27.90440 -27.53573 -25.65328 -25.34756 -24.08168 -23.54124 -21.79295 -21.39225 -19.94666 -19.64494 -19.18376 -17.99821 -17.58024 -17.03447 -16.94482 -16.70137 -16.41689 -16.31448 -15.89119 -15.61826 -15.42453 -15.23232 -14.95235 -14.49577 -14.43260 -14.28301 -13.91762 -13.69740 -13.50768 -13.43119 -13.27451 -13.05484 -12.90053 -12.78344 -12.59774 -12.47987 -12.40320 -12.20829 -12.14146 -12.05851 -11.91959 -11.84399 -11.78582 -11.70020 -11.58218 -11.29122 -11.26222 -11.10584 -10.81543 -10.71811 -10.36774 -9.57695 -8.91187 -7.87863 -5.13341 1.49847 1.50903 1.56704 1.66018 1.99728 2.60473 2.72817 3.35180 3.45063 3.61072 3.66280 3.80510 3.90328 3.90962 4.03297 4.04435 4.14724 4.22839 4.32217 4.37588 4.41945 4.46940 4.49799 4.51515 4.53259 4.57159 4.58377 4.60834 4.67354 4.72194 4.75116 4.76782 4.82111 4.86463 4.90227 4.96119 5.04370 5.07489 5.10113 5.11756 5.24424 5.26334 5.27986 5.31046 5.34723 5.48194 5.49707 5.57671 5.61823 5.65476 6.19648 6.35102 6.47191 7.21526 7.42322 8.19046 8.44569 9.35156 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014744 B = 0.003117 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.580243 B = 8981.042757 C = 9113.242717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.412 6.412 3 C 0.066 3.934 4 C -0.079 4.079 5 C 0.530 3.470 6 O -0.579 6.579 7 N -0.605 5.605 8 C 0.062 3.938 9 C 0.153 3.847 10 C -0.112 4.112 11 C -0.112 4.112 12 C 0.168 3.832 13 N -0.726 5.726 14 C -0.235 4.235 15 H 0.070 0.930 16 C -0.069 4.069 17 N -0.964 5.964 18 Si 0.963 3.037 19 H -0.282 1.282 20 H -0.297 1.297 21 H -0.283 1.283 22 C -0.124 4.124 23 C -0.103 4.103 24 C -0.089 4.089 25 C -0.127 4.127 26 C -0.120 4.120 27 C -0.127 4.127 28 H 0.089 0.911 29 H 0.043 0.957 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.091 0.909 33 H 0.067 0.933 34 H 0.103 0.897 35 H 0.064 0.936 36 H 0.081 0.919 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.079 0.921 40 H 0.061 0.939 41 H 0.043 0.957 42 H 0.376 0.624 43 H 0.249 0.751 44 H 0.046 0.954 45 H 0.067 0.933 46 H 0.050 0.950 47 H 0.056 0.944 48 H 0.053 0.947 49 H 0.093 0.907 50 H 0.083 0.917 51 H 0.039 0.961 52 H 0.090 0.910 53 H 0.057 0.943 54 H 0.107 0.893 55 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.628 -5.401 -20.281 21.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.331 6.331 3 C -0.010 4.010 4 C -0.082 4.082 5 C 0.319 3.681 6 O -0.458 6.458 7 N -0.336 5.336 8 C -0.080 4.080 9 C 0.049 3.951 10 C -0.150 4.150 11 C -0.150 4.150 12 C 0.059 3.941 13 N -0.368 5.368 14 C -0.367 4.367 15 H 0.087 0.913 16 C -0.262 4.262 17 N -0.615 5.615 18 Si 0.793 3.207 19 H -0.209 1.209 20 H -0.223 1.223 21 H -0.210 1.210 22 C -0.164 4.164 23 C -0.142 4.142 24 C -0.127 4.127 25 C -0.164 4.164 26 C -0.158 4.158 27 C -0.164 4.164 28 H 0.107 0.893 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.109 0.891 33 H 0.085 0.915 34 H 0.121 0.879 35 H 0.083 0.917 36 H 0.099 0.901 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.098 0.902 40 H 0.080 0.920 41 H 0.061 0.939 42 H 0.209 0.791 43 H 0.058 0.942 44 H 0.065 0.935 45 H 0.086 0.914 46 H 0.069 0.931 47 H 0.074 0.926 48 H 0.072 0.928 49 H 0.112 0.888 50 H 0.102 0.898 51 H 0.058 0.942 52 H 0.109 0.891 53 H 0.076 0.924 54 H 0.125 0.875 55 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.181 -6.089 -20.128 21.269 hybrid contribution 0.008 1.004 1.083 1.476 sum -3.173 -5.085 -19.046 19.967 Atomic orbital electron populations 1.22901 0.79503 1.03566 1.01003 1.87952 1.21342 1.28220 1.95589 1.22925 0.90182 0.85292 1.02601 1.21674 0.95341 0.98472 0.92762 1.20818 0.76869 0.84998 0.85417 1.90604 1.48436 1.20085 1.86673 1.47916 1.59072 1.18406 1.08239 1.22371 0.98725 0.82803 1.04113 1.20921 0.93672 0.97434 0.83045 1.21661 0.97417 1.01109 0.94854 1.21666 0.98351 0.98805 0.96222 1.20423 0.92791 0.85619 0.95258 1.42570 1.33082 1.13459 1.47654 1.19542 1.07525 0.95738 1.13866 0.91250 1.25345 0.99081 0.99214 1.02533 1.69774 1.25204 1.19750 1.46806 0.85375 0.77644 0.78235 0.79467 1.20894 1.22300 1.20976 1.21989 0.98817 0.99922 0.95714 1.21547 0.96886 0.99330 0.96431 1.22275 0.96040 0.98866 0.95536 1.22375 0.96330 0.96031 1.01692 1.22132 0.97374 0.95883 1.00390 1.22655 0.98204 0.93530 1.02025 0.89261 0.93800 0.92021 0.91714 0.89095 0.91506 0.87879 0.91713 0.90099 0.92123 0.92369 0.90195 0.92050 0.93863 0.79075 0.94232 0.93534 0.91429 0.93091 0.92552 0.92789 0.88821 0.89789 0.94250 0.89114 0.92442 0.87500 0.90324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 113.37 1.25 1.66 16 2 O -0.41 -9.54 10.10 -148.98 -1.51 -11.04 16 3 C 0.07 1.22 4.46 71.98 0.32 1.54 16 4 C -0.08 -1.72 0.35 -51.85 -0.02 -1.74 16 5 C 0.53 16.02 6.08 87.66 0.53 16.55 16 6 O -0.58 -22.06 15.02 -3.01 -0.05 -22.10 16 7 N -0.61 -17.64 2.70 -822.57 -2.22 -19.87 16 8 C 0.06 1.51 7.66 127.77 0.98 2.49 16 9 C 0.15 4.97 2.52 44.99 0.11 5.08 16 10 C -0.11 -3.67 4.99 30.59 0.15 -3.52 16 11 C -0.11 -3.71 5.61 30.59 0.17 -3.54 16 12 C 0.17 6.51 3.10 44.99 0.14 6.65 16 13 N -0.73 -34.90 4.28 -322.95 -1.38 -36.28 16 14 C -0.23 -12.64 9.93 84.03 0.83 -11.81 16 15 H 0.07 3.65 7.83 -2.91 -0.02 3.63 16 16 C -0.07 -3.85 5.50 84.86 0.47 -3.39 16 17 N -0.96 -56.49 13.06 21.65 0.28 -56.21 16 18 Si 0.96 45.40 29.55 68.60 2.03 47.42 16 19 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 20 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 21 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 22 C -0.12 -4.41 5.61 30.60 0.17 -4.24 16 23 C -0.10 -3.59 5.05 30.59 0.15 -3.43 16 24 C -0.09 -1.93 5.20 31.89 0.17 -1.76 16 25 C -0.13 -2.54 6.61 31.67 0.21 -2.33 16 26 C -0.12 -1.98 6.80 31.32 0.21 -1.77 16 27 C -0.13 -2.12 4.87 31.32 0.15 -1.96 16 28 H 0.09 1.30 8.14 -2.39 -0.02 1.29 16 29 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.07 1.14 5.36 -2.39 -0.01 1.13 16 32 H 0.09 1.11 8.00 -2.39 -0.02 1.09 16 33 H 0.07 1.59 6.81 -2.39 -0.02 1.57 16 34 H 0.10 1.91 3.43 -2.38 -0.01 1.90 16 35 H 0.06 1.81 6.45 -2.39 -0.02 1.79 16 36 H 0.08 2.87 6.91 -2.39 -0.02 2.85 16 37 H 0.06 1.90 8.14 -2.38 -0.02 1.89 16 38 H 0.06 2.12 5.06 -2.39 -0.01 2.10 16 39 H 0.08 2.31 8.14 -2.39 -0.02 2.30 16 40 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.04 1.72 8.08 -2.39 -0.02 1.70 16 42 H 0.38 19.10 6.06 -92.70 -0.56 18.54 16 43 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 44 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 46 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 47 H 0.06 2.24 7.14 -2.38 -0.02 2.22 16 48 H 0.05 1.52 7.26 -2.39 -0.02 1.50 16 49 H 0.09 1.56 8.06 -2.39 -0.02 1.54 16 50 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 51 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 52 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 53 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 54 H 0.11 1.14 7.74 -2.39 -0.02 1.12 16 55 H 0.08 1.49 4.47 -2.39 -0.01 1.48 16 Total: -1.00 -68.62 404.20 3.47 -65.15 By element: Atomic # 1 Polarization: 38.15 SS G_CDS: 0.31 Total: 38.46 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: 6.01 Total: -5.52 kcal Atomic # 7 Polarization: -109.04 SS G_CDS: -3.32 Total: -112.36 kcal Atomic # 8 Polarization: -31.60 SS G_CDS: -1.55 Total: -33.15 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.42 kcal Total: -68.62 3.47 -65.15 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674796511.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.777 kcal (2) G-P(sol) polarization free energy of solvation -68.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds