Wall clock time and date at job start Tue Mar 31 2020 22:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50705 * 120.00039 * 2 1 4 4 C 1.50697 * 120.00032 * 179.97438 * 2 1 3 5 5 H 1.09003 * 109.47008 * 5.00585 * 4 2 1 6 6 C 1.52998 * 109.47313 * 244.99971 * 4 2 1 7 7 C 1.50700 * 109.47248 * 175.00056 * 6 4 2 8 8 O 1.21284 * 120.00125 * 359.97438 * 7 6 4 9 9 N 1.34774 * 120.00404 * 180.02562 * 7 6 4 10 10 C 1.46502 * 120.00365 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.46857 * 180.02562 * 10 9 7 12 12 H 1.09006 * 109.44809 * 294.93857 * 11 10 9 13 13 C 1.54865 * 109.44529 * 175.00138 * 11 10 9 14 14 C 1.47094 * 110.32070 * 168.69270 * 13 11 10 15 15 C 1.52562 * 114.32865 * 62.79782 * 14 13 11 16 16 C 1.50878 * 109.35931 * 274.98722 * 15 14 13 17 17 C 1.53949 * 110.09547 * 91.88680 * 16 15 14 18 18 N 1.44576 * 109.45396 * 54.86772 * 11 10 9 19 19 C 1.36930 * 118.64419 * 30.76147 * 18 11 10 20 20 H 1.08003 * 120.00121 * 27.74759 * 19 18 11 21 21 C 1.38815 * 120.00383 * 207.74682 * 19 18 11 22 22 N 1.31618 * 119.99514 * 14.62606 * 21 19 18 23 23 Si 1.86797 * 120.00266 * 194.62280 * 21 19 18 24 24 H 1.48501 * 109.47196 * 0.02562 * 23 21 19 25 25 H 1.48510 * 109.46871 * 119.99955 * 23 21 19 26 26 H 1.48498 * 109.47214 * 240.00101 * 23 21 19 27 27 O 1.42909 * 109.46954 * 124.99968 * 4 2 1 28 28 C 1.42898 * 113.99966 * 269.99761 * 27 4 2 29 29 C 1.52994 * 109.47091 * 180.02562 * 28 27 4 30 30 H 1.08009 * 119.99868 * 359.97438 * 1 2 3 31 31 H 1.07996 * 120.00161 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46708 * 269.99987 * 3 2 1 33 33 H 1.08990 * 109.47107 * 29.99971 * 3 2 1 34 34 H 1.09000 * 109.46856 * 150.00182 * 3 2 1 35 35 H 1.09000 * 109.47033 * 295.00052 * 6 4 2 36 36 H 1.08996 * 109.47006 * 55.00250 * 6 4 2 37 37 H 0.97010 * 119.99682 * 359.97438 * 9 7 6 38 38 H 1.09006 * 109.46649 * 299.99611 * 10 9 7 39 39 H 1.08996 * 109.47039 * 59.99770 * 10 9 7 40 40 H 1.08998 * 109.32791 * 288.94835 * 13 11 10 41 41 H 1.08993 * 109.33051 * 48.59899 * 13 11 10 42 42 H 1.09009 * 108.51099 * 184.05474 * 14 13 11 43 43 H 1.09003 * 108.51018 * 301.69548 * 14 13 11 44 44 H 1.09002 * 109.49237 * 34.95491 * 15 14 13 45 45 H 1.09007 * 109.49161 * 155.02202 * 15 14 13 46 46 H 1.09001 * 109.36639 * 212.07418 * 16 15 14 47 47 H 1.08993 * 109.37029 * 331.69399 * 16 15 14 48 48 H 1.09008 * 108.94813 * 80.12000 * 17 16 15 49 49 H 1.08999 * 108.94921 * 198.74668 * 17 16 15 50 50 H 0.97005 * 119.99988 * 180.02562 * 22 21 19 51 51 H 1.08994 * 109.47449 * 300.00219 * 28 27 4 52 52 H 1.08999 * 109.46907 * 60.00576 * 28 27 4 53 53 H 1.09005 * 109.47432 * 300.00761 * 29 28 27 54 54 H 1.09003 * 109.47207 * 59.99883 * 29 28 27 55 55 H 1.08999 * 109.47549 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0634 -1.3051 0.0006 5 1 1.3585 -2.1316 -0.0887 6 6 2.8464 -1.4414 1.3080 7 6 3.5008 -2.7978 1.3625 8 8 3.3550 -3.5788 0.4462 9 7 4.2474 -3.1434 2.4300 10 6 4.8840 -4.4618 2.4828 11 6 5.6658 -4.5986 3.7908 12 1 6.4872 -3.8820 3.7994 13 6 6.2336 -6.0349 3.9043 14 6 7.2044 -6.1148 5.0066 15 6 6.6149 -5.8317 6.3850 16 6 6.6032 -4.3426 6.6277 17 6 5.2598 -3.7433 6.1739 18 7 4.7860 -4.3352 4.9074 19 6 3.4585 -4.6476 4.7850 20 1 3.1499 -5.4444 4.1244 21 6 2.5092 -3.9404 5.5100 22 7 2.8340 -2.8014 6.0840 23 14 0.7709 -4.6050 5.6707 24 1 0.6637 -5.8928 4.9390 25 1 0.4552 -4.8236 7.1053 26 1 -0.1880 -3.6275 5.0961 27 8 2.9709 -1.3317 -1.1031 28 6 2.4139 -1.8775 -2.3005 29 6 3.4682 -1.8570 -3.4089 30 1 -0.5400 0.9354 0.0004 31 1 -0.5400 -0.9353 -0.0004 32 1 2.2451 1.6197 -1.0277 33 1 1.4745 2.0647 0.5138 34 1 3.0159 1.1747 0.5138 35 1 3.6116 -0.6666 1.3557 36 1 2.1657 -1.3322 2.1522 37 1 4.3638 -2.5189 3.1632 38 1 4.1190 -5.2369 2.4344 39 1 5.5652 -4.5704 1.6388 40 1 5.4169 -6.7319 4.0917 41 1 6.7287 -6.3020 2.9708 42 1 7.6378 -7.1150 5.0142 43 1 8.0012 -5.3951 4.8188 44 1 5.5957 -6.2156 6.4305 45 1 7.2221 -6.3197 7.1474 46 1 6.7448 -4.1486 7.6909 47 1 7.4141 -3.8785 6.0664 48 1 4.5135 -3.9205 6.9484 49 1 5.3793 -2.6682 6.0393 50 1 2.1708 -2.3073 6.5910 51 1 2.0981 -2.9048 -2.1189 52 1 1.5538 -1.2816 -2.6056 53 1 3.7845 -0.8298 -3.5906 54 1 4.3281 -2.4532 -3.1036 55 1 3.0432 -2.2729 -4.3224 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675253838.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:27 Heat of formation + Delta-G solvation = -73.635248 kcal Electronic energy + Delta-G solvation = -31749.922051 eV Core-core repulsion = 27786.911302 eV Total energy + Delta-G solvation = -3963.010750 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.90572 -39.84232 -38.98581 -36.10938 -35.92611 -35.18517 -33.32710 -32.56140 -32.42173 -31.01366 -28.57451 -28.23219 -27.26065 -25.22634 -24.98017 -23.64269 -23.30394 -21.46770 -20.80572 -20.77946 -19.78521 -18.36619 -17.87023 -17.58008 -17.23582 -16.72926 -16.57953 -16.19072 -15.99226 -15.73119 -15.44034 -15.20777 -14.99737 -14.81722 -14.59677 -14.35860 -14.17438 -13.91431 -13.69907 -13.47896 -13.37304 -13.19056 -13.12089 -12.90853 -12.84295 -12.77370 -12.65878 -12.57544 -12.45250 -12.34876 -11.99568 -11.97542 -11.78829 -11.53340 -11.39778 -11.31559 -11.19269 -11.02971 -10.68532 -10.44844 -10.34238 -10.10129 -9.71587 -8.53706 -7.77791 -5.20730 1.17602 1.39468 1.46558 1.51447 1.85728 2.49040 2.55472 2.80897 3.37022 3.61250 3.70427 3.89509 3.99792 4.04854 4.10970 4.17006 4.22258 4.28607 4.36326 4.40935 4.44702 4.50854 4.52753 4.60845 4.62939 4.69146 4.71359 4.77552 4.84790 4.87886 4.93455 5.00596 5.01788 5.07216 5.09377 5.14580 5.15502 5.25386 5.27231 5.27811 5.38977 5.43694 5.56477 5.60350 5.67868 5.73532 5.78092 5.80225 5.83063 5.92831 6.34599 6.49144 6.83484 7.28657 7.47811 8.02426 8.40853 9.25855 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011519 B = 0.003665 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2430.157170 B = 7637.141351 C = 8913.887489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.156 4.156 3 C -0.107 4.107 4 C 0.148 3.852 5 H 0.051 0.949 6 C -0.129 4.129 7 C 0.509 3.491 8 O -0.588 6.588 9 N -0.693 5.693 10 C 0.136 3.864 11 C 0.174 3.826 12 H 0.056 0.944 13 C -0.128 4.128 14 C -0.100 4.100 15 C -0.103 4.103 16 C -0.133 4.133 17 C 0.190 3.810 18 N -0.587 5.587 19 C -0.229 4.229 20 H 0.046 0.954 21 C -0.025 4.025 22 N -0.918 5.918 23 Si 0.928 3.072 24 H -0.285 1.285 25 H -0.294 1.294 26 H -0.296 1.296 27 O -0.381 6.381 28 C 0.059 3.941 29 C -0.142 4.142 30 H 0.122 0.878 31 H 0.093 0.907 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.113 0.887 36 H 0.104 0.896 37 H 0.407 0.593 38 H 0.038 0.962 39 H 0.060 0.940 40 H 0.041 0.959 41 H 0.071 0.929 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.041 0.959 45 H 0.063 0.937 46 H 0.060 0.940 47 H 0.059 0.941 48 H 0.039 0.961 49 H 0.003 0.997 50 H 0.246 0.754 51 H 0.032 0.968 52 H 0.054 0.946 53 H 0.067 0.933 54 H 0.048 0.952 55 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.868 4.903 -9.852 11.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.157 4.157 3 C -0.164 4.164 4 C 0.090 3.910 5 H 0.069 0.931 6 C -0.168 4.168 7 C 0.297 3.703 8 O -0.469 6.469 9 N -0.342 5.342 10 C 0.011 3.989 11 C 0.066 3.934 12 H 0.074 0.926 13 C -0.169 4.169 14 C -0.138 4.138 15 C -0.141 4.141 16 C -0.172 4.172 17 C 0.065 3.935 18 N -0.310 5.310 19 C -0.360 4.360 20 H 0.064 0.936 21 C -0.221 4.221 22 N -0.565 5.565 23 Si 0.759 3.241 24 H -0.210 1.210 25 H -0.221 1.221 26 H -0.224 1.224 27 O -0.300 6.300 28 C -0.017 4.017 29 C -0.199 4.199 30 H 0.140 0.860 31 H 0.111 0.889 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.131 0.869 36 H 0.122 0.878 37 H 0.243 0.757 38 H 0.056 0.944 39 H 0.078 0.922 40 H 0.060 0.940 41 H 0.089 0.911 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.060 0.940 45 H 0.082 0.918 46 H 0.079 0.921 47 H 0.078 0.922 48 H 0.058 0.942 49 H 0.021 0.979 50 H 0.056 0.944 51 H 0.050 0.950 52 H 0.072 0.928 53 H 0.086 0.914 54 H 0.067 0.933 55 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.907 4.523 -10.368 11.967 hybrid contribution -1.714 -0.405 0.849 1.955 sum 2.192 4.118 -9.519 10.601 Atomic orbital electron populations 1.23936 0.94850 1.02881 1.00113 1.22287 0.95850 0.96331 1.01188 1.20732 1.00029 0.93124 1.02516 1.20658 0.90350 0.94094 0.85928 0.93103 1.21730 1.01576 0.95088 0.98428 1.20792 0.78518 0.89463 0.81569 1.90589 1.63258 1.54334 1.38766 1.45738 1.50161 1.17672 1.20617 1.21375 0.95492 0.84563 0.97446 1.20658 0.91848 0.95228 0.85658 0.92642 1.21286 0.98723 0.97977 0.98896 1.20277 0.97892 1.01488 0.94110 1.20905 1.00278 0.95931 0.96969 1.21943 0.98373 0.96419 1.00425 1.20784 0.92476 0.93182 0.87052 1.43771 1.04000 1.73084 1.10118 1.18982 0.83503 1.10422 1.23119 0.93628 1.25220 0.98820 0.95872 1.02183 1.70118 1.33580 1.13894 1.38859 0.85820 0.83751 0.77712 0.76798 1.21001 1.22095 1.22356 1.87857 1.39140 1.83287 1.19759 1.22502 0.97219 0.96659 0.85365 1.21694 0.98504 1.02867 0.96800 0.85982 0.88885 0.90949 0.90656 0.92028 0.86930 0.87756 0.75703 0.94406 0.92172 0.94041 0.91079 0.91989 0.92036 0.93985 0.91831 0.92093 0.92240 0.94241 0.97875 0.94442 0.94979 0.92786 0.91421 0.93312 0.89261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.01 13.91 67.79 0.94 -3.07 16 2 C -0.16 -3.87 5.05 -16.48 -0.08 -3.95 16 3 C -0.11 -2.22 9.84 71.24 0.70 -1.52 16 4 C 0.15 4.53 1.86 29.85 0.06 4.59 16 5 H 0.05 1.73 7.25 -2.39 -0.02 1.71 16 6 C -0.13 -4.18 5.22 29.85 0.16 -4.02 16 7 C 0.51 20.13 7.71 87.66 0.68 20.80 16 8 O -0.59 -26.32 15.42 10.73 0.17 -26.16 16 9 N -0.69 -27.32 4.71 -463.06 -2.18 -29.50 16 10 C 0.14 5.27 4.53 86.38 0.39 5.66 16 11 C 0.17 6.37 2.19 45.99 0.10 6.47 16 12 H 0.06 1.94 8.06 -2.38 -0.02 1.92 16 13 C -0.13 -4.11 5.06 29.40 0.15 -3.96 16 14 C -0.10 -2.83 5.16 28.61 0.15 -2.69 16 15 C -0.10 -3.26 5.51 29.76 0.16 -3.09 16 16 C -0.13 -4.44 5.71 30.22 0.17 -4.26 16 17 C 0.19 8.15 4.66 86.49 0.40 8.56 16 18 N -0.59 -25.38 1.77 -674.23 -1.20 -26.57 16 19 C -0.23 -11.39 7.64 84.04 0.64 -10.75 16 20 H 0.05 2.42 6.72 -2.91 -0.02 2.40 16 21 C -0.02 -1.27 4.89 84.86 0.41 -0.86 16 22 N -0.92 -48.58 11.03 21.65 0.24 -48.34 16 23 Si 0.93 44.06 29.58 68.60 2.03 46.09 16 24 H -0.28 -13.61 7.11 99.48 0.71 -12.91 16 25 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 26 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 27 O -0.38 -12.00 9.07 -135.21 -1.23 -13.22 16 28 C 0.06 1.59 6.46 71.98 0.46 2.05 16 29 C -0.14 -3.09 10.28 71.98 0.74 -2.35 16 30 H 0.12 2.15 8.04 -2.91 -0.02 2.12 16 31 H 0.09 2.12 7.84 -2.91 -0.02 2.09 16 32 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.07 1.31 8.06 -2.39 -0.02 1.29 16 34 H 0.06 1.33 7.02 -2.39 -0.02 1.31 16 35 H 0.11 3.24 7.19 -2.39 -0.02 3.23 16 36 H 0.10 3.44 8.14 -2.39 -0.02 3.42 16 37 H 0.41 16.54 8.08 -92.70 -0.75 15.79 16 38 H 0.04 1.67 6.83 -2.38 -0.02 1.65 16 39 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.07 1.97 8.11 -2.39 -0.02 1.95 16 42 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 43 H 0.06 1.60 7.35 -2.39 -0.02 1.58 16 44 H 0.04 1.60 7.48 -2.39 -0.02 1.58 16 45 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 46 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 47 H 0.06 1.82 7.31 -2.39 -0.02 1.80 16 48 H 0.04 1.96 6.39 -2.38 -0.02 1.95 16 49 H 0.00 0.15 8.02 -2.39 -0.02 0.13 16 50 H 0.25 12.97 8.31 -92.70 -0.77 12.20 16 51 H 0.03 0.97 8.08 -2.39 -0.02 0.95 16 52 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 53 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 54 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 55 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -59.56 424.28 4.16 -55.41 By element: Atomic # 1 Polarization: 34.59 SS G_CDS: 0.09 Total: 34.68 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: 6.24 Total: 7.61 kcal Atomic # 7 Polarization: -101.27 SS G_CDS: -3.14 Total: -104.41 kcal Atomic # 8 Polarization: -38.32 SS G_CDS: -1.06 Total: -39.38 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -59.56 4.16 -55.41 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675253838.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.226 kcal (2) G-P(sol) polarization free energy of solvation -59.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds