Wall clock time and date at job start Tue Mar 31 2020 22:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50697 * 120.00474 * 2 1 4 4 C 1.50708 * 119.99397 * 180.02562 * 2 1 3 5 5 H 1.08996 * 109.47339 * 354.99697 * 4 2 1 6 6 C 1.52995 * 109.47236 * 114.99950 * 4 2 1 7 7 C 1.50692 * 109.47469 * 184.99824 * 6 4 2 8 8 O 1.21288 * 119.99646 * 359.97438 * 7 6 4 9 9 N 1.34772 * 120.00323 * 179.97438 * 7 6 4 10 10 C 1.46500 * 120.00108 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.47032 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.44627 * 294.94237 * 11 10 9 13 13 C 1.54867 * 109.44900 * 175.00154 * 11 10 9 14 14 C 1.47097 * 110.32335 * 168.69016 * 13 11 10 15 15 C 1.52568 * 114.32383 * 62.79921 * 14 13 11 16 16 C 1.50880 * 109.36104 * 274.99208 * 15 14 13 17 17 C 1.53941 * 110.09822 * 91.88600 * 16 15 14 18 18 N 1.44571 * 109.45161 * 54.87050 * 11 10 9 19 19 C 1.36935 * 118.64743 * 30.76118 * 18 11 10 20 20 H 1.08008 * 119.99714 * 27.75935 * 19 18 11 21 21 C 1.38814 * 120.00462 * 207.75898 * 19 18 11 22 22 N 1.31619 * 119.99663 * 14.60628 * 21 19 18 23 23 Si 1.86798 * 119.99946 * 194.60953 * 21 19 18 24 24 H 1.48497 * 109.47410 * 90.00090 * 23 21 19 25 25 H 1.48500 * 109.47000 * 209.99920 * 23 21 19 26 26 H 1.48501 * 109.47164 * 329.99639 * 23 21 19 27 27 O 1.42898 * 109.46786 * 234.99683 * 4 2 1 28 28 C 1.42899 * 114.00265 * 90.00051 * 27 4 2 29 29 C 1.53000 * 109.47481 * 179.97438 * 28 27 4 30 30 H 1.08001 * 120.00478 * 180.02562 * 1 2 3 31 31 H 1.08007 * 119.99626 * 359.97438 * 1 2 3 32 32 H 1.08997 * 109.46681 * 270.00165 * 3 2 1 33 33 H 1.08999 * 109.46769 * 29.99804 * 3 2 1 34 34 H 1.09000 * 109.47118 * 149.99836 * 3 2 1 35 35 H 1.09007 * 109.46727 * 304.99776 * 6 4 2 36 36 H 1.09005 * 109.47382 * 64.99440 * 6 4 2 37 37 H 0.97002 * 119.99896 * 0.02562 * 9 7 6 38 38 H 1.09000 * 109.47031 * 300.00224 * 10 9 7 39 39 H 1.08999 * 109.47113 * 60.00266 * 10 9 7 40 40 H 1.09000 * 109.32663 * 288.95008 * 13 11 10 41 41 H 1.08996 * 109.32680 * 48.60131 * 13 11 10 42 42 H 1.08998 * 108.50905 * 184.05703 * 14 13 11 43 43 H 1.08998 * 108.50926 * 301.70392 * 14 13 11 44 44 H 1.09007 * 109.48871 * 34.95470 * 15 14 13 45 45 H 1.08989 * 109.48903 * 155.01922 * 15 14 13 46 46 H 1.08999 * 109.36189 * 212.07671 * 16 15 14 47 47 H 1.09002 * 109.36556 * 331.69144 * 16 15 14 48 48 H 1.08994 * 108.95125 * 80.11975 * 17 16 15 49 49 H 1.09003 * 108.94839 * 198.75055 * 17 16 15 50 50 H 0.96997 * 119.99237 * 179.97438 * 22 21 19 51 51 H 1.09006 * 109.46840 * 59.99711 * 28 27 4 52 52 H 1.09000 * 109.47485 * 300.00077 * 28 27 4 53 53 H 1.09007 * 109.47054 * 180.02562 * 29 28 27 54 54 H 1.08997 * 109.47083 * 59.99920 * 29 28 27 55 55 H 1.09003 * 109.46854 * 299.99785 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0634 -1.3053 -0.0006 5 1 1.3584 -2.1317 0.0887 6 6 2.8463 -1.4416 -1.3079 7 6 3.5006 -2.7980 -1.3625 8 8 3.3554 -3.5786 -0.4457 9 7 4.2471 -3.1437 -2.4301 10 6 4.8836 -4.4621 -2.4829 11 6 5.6664 -4.5985 -3.7904 12 1 4.9737 -4.5796 -4.6317 13 6 6.4409 -5.9396 -3.7902 14 6 6.9792 -6.2189 -5.1304 15 6 7.9967 -5.1952 -5.6248 16 6 7.2709 -4.0352 -6.2603 17 6 7.0068 -2.9385 -5.2128 18 7 6.5988 -3.5001 -3.9101 19 6 7.1251 -2.9582 -2.7679 20 1 7.2290 -3.5651 -1.8805 21 6 7.5250 -1.6291 -2.7506 22 7 7.1452 -0.8150 -3.7125 23 14 8.6024 -0.9960 -1.3621 24 1 10.0316 -1.1627 -1.7290 25 1 8.3156 0.4424 -1.1295 26 1 8.3163 -1.7642 -0.1238 27 8 2.9708 -1.3319 1.1030 28 6 2.4138 -1.8776 2.3005 29 6 3.4682 -1.8571 3.4089 30 1 -0.5401 -0.9353 0.0004 31 1 -0.5400 0.9354 0.0004 32 1 2.2452 1.6196 -1.0277 33 1 1.4745 2.0647 0.5138 34 1 3.0160 1.1746 0.5139 35 1 2.1655 -1.3324 -2.1522 36 1 3.6116 -0.6669 -1.3558 37 1 4.3635 -2.5192 -3.1632 38 1 5.5648 -4.5707 -1.6389 39 1 4.1187 -5.2371 -2.4345 40 1 7.2625 -5.8816 -3.0763 41 1 5.7668 -6.7454 -3.4998 42 1 7.4544 -7.1997 -5.1149 43 1 6.1499 -6.2484 -5.8371 44 1 8.5896 -4.8362 -4.7835 45 1 8.6528 -5.6606 -6.3601 46 1 7.8796 -3.6259 -7.0665 47 1 6.3212 -4.3823 -6.6675 48 1 7.9159 -2.3529 -5.0765 49 1 6.2167 -2.2826 -5.5785 50 1 7.4244 0.1139 -3.7001 51 1 2.0979 -2.9050 2.1189 52 1 1.5537 -1.2816 2.6057 53 1 3.0434 -2.2738 4.3223 54 1 3.7845 -0.8300 3.5906 55 1 4.3280 -2.4534 3.1035 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675253840.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:36 Heat of formation + Delta-G solvation = -74.056387 kcal Electronic energy + Delta-G solvation = -31905.706405 eV Core-core repulsion = 27942.677394 eV Total energy + Delta-G solvation = -3963.029012 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.89244 -39.83787 -38.98533 -36.09343 -35.92073 -35.18396 -33.32136 -32.56159 -32.42245 -31.03264 -28.57863 -28.21967 -27.25525 -25.22300 -24.96302 -23.66496 -23.29428 -21.46090 -20.79663 -20.77767 -19.76384 -18.35192 -17.88000 -17.54441 -17.26343 -16.67867 -16.59426 -16.23945 -15.92101 -15.79502 -15.36643 -15.20419 -15.06395 -14.74015 -14.60128 -14.33756 -14.19080 -13.91840 -13.76553 -13.46993 -13.37255 -13.17958 -13.11669 -12.92208 -12.82825 -12.76504 -12.62764 -12.57708 -12.50042 -12.37390 -12.00171 -11.97777 -11.76734 -11.53172 -11.39542 -11.31309 -11.19478 -11.02566 -10.67751 -10.44345 -10.33864 -10.07562 -9.70888 -8.53623 -7.78579 -5.20871 1.20987 1.39881 1.45423 1.49965 1.85965 2.50050 2.56026 2.85666 3.36486 3.61681 3.72974 3.91511 3.99505 4.05088 4.11243 4.15673 4.22812 4.28736 4.34994 4.43629 4.47459 4.50362 4.51220 4.56140 4.63111 4.69247 4.70815 4.80183 4.85093 4.87133 4.92432 4.99582 5.01889 5.05757 5.09995 5.14812 5.15229 5.21574 5.27481 5.27938 5.39180 5.44052 5.56743 5.63444 5.68240 5.73753 5.78470 5.83206 5.83435 5.93206 6.39808 6.48877 6.84450 7.28806 7.48844 8.02727 8.40208 9.24869 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011851 B = 0.003683 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.053452 B = 7600.961324 C = 8210.232117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.159 4.159 3 C -0.114 4.114 4 C 0.147 3.853 5 H 0.066 0.934 6 C -0.129 4.129 7 C 0.509 3.491 8 O -0.587 6.587 9 N -0.694 5.694 10 C 0.136 3.864 11 C 0.174 3.826 12 H 0.058 0.942 13 C -0.129 4.129 14 C -0.100 4.100 15 C -0.104 4.104 16 C -0.132 4.132 17 C 0.190 3.810 18 N -0.587 5.587 19 C -0.228 4.228 20 H 0.044 0.956 21 C -0.023 4.023 22 N -0.917 5.917 23 Si 0.927 3.073 24 H -0.290 1.290 25 H -0.297 1.297 26 H -0.291 1.291 27 O -0.392 6.392 28 C 0.062 3.938 29 C -0.146 4.146 30 H 0.104 0.896 31 H 0.120 0.880 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.049 0.951 35 H 0.126 0.874 36 H 0.090 0.910 37 H 0.407 0.593 38 H 0.034 0.966 39 H 0.063 0.937 40 H 0.039 0.961 41 H 0.072 0.928 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.040 0.960 45 H 0.063 0.937 46 H 0.060 0.940 47 H 0.060 0.940 48 H 0.038 0.962 49 H 0.004 0.996 50 H 0.246 0.754 51 H 0.039 0.961 52 H 0.059 0.941 53 H 0.094 0.906 54 H 0.060 0.940 55 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.668 -2.220 1.451 11.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.171 4.171 4 C 0.089 3.911 5 H 0.084 0.916 6 C -0.169 4.169 7 C 0.296 3.704 8 O -0.469 6.469 9 N -0.342 5.342 10 C 0.011 3.989 11 C 0.066 3.934 12 H 0.076 0.924 13 C -0.169 4.169 14 C -0.137 4.137 15 C -0.141 4.141 16 C -0.171 4.171 17 C 0.065 3.935 18 N -0.309 5.309 19 C -0.359 4.359 20 H 0.062 0.938 21 C -0.220 4.220 22 N -0.563 5.563 23 Si 0.759 3.241 24 H -0.218 1.218 25 H -0.223 1.223 26 H -0.217 1.217 27 O -0.312 6.312 28 C -0.014 4.014 29 C -0.203 4.203 30 H 0.123 0.877 31 H 0.138 0.862 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.068 0.932 35 H 0.144 0.856 36 H 0.108 0.892 37 H 0.243 0.757 38 H 0.052 0.948 39 H 0.081 0.919 40 H 0.058 0.942 41 H 0.090 0.910 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.059 0.941 45 H 0.082 0.918 46 H 0.079 0.921 47 H 0.079 0.921 48 H 0.057 0.943 49 H 0.022 0.978 50 H 0.055 0.945 51 H 0.057 0.943 52 H 0.077 0.923 53 H 0.112 0.888 54 H 0.080 0.920 55 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -11.538 -2.545 2.022 11.987 hybrid contribution 1.049 0.860 0.621 1.492 sum -10.489 -1.685 2.644 10.948 Atomic orbital electron populations 1.23937 0.94228 1.03237 0.99229 1.22201 0.96016 0.95783 1.01972 1.20746 1.00000 0.94007 1.02300 1.20741 0.90307 0.94487 0.85605 0.91581 1.21756 1.01333 0.94555 0.99273 1.20824 0.78972 0.89200 0.81390 1.90586 1.64320 1.54252 1.37773 1.45745 1.48874 1.18004 1.21602 1.21378 0.94925 0.84017 0.98595 1.20667 0.90037 0.88498 0.94184 0.92419 1.21293 0.99876 0.97805 0.97944 1.20275 0.98537 0.98339 0.96580 1.20908 0.97966 0.95825 0.99433 1.21941 1.00007 0.97113 0.98063 1.20781 0.97506 0.91882 0.83306 1.43763 1.48562 1.36650 1.01967 1.18913 1.33789 0.91659 0.91536 0.93836 1.25186 1.02029 0.96205 0.98537 1.70100 1.47646 1.03925 1.34663 0.85896 0.80077 0.77170 0.80985 1.21764 1.22336 1.21692 1.87927 1.39727 1.83344 1.20224 1.22484 0.96867 0.97004 0.85092 1.21727 0.98688 1.02448 0.97447 0.87741 0.86155 0.91139 0.90426 0.93236 0.85647 0.89188 0.75731 0.94767 0.91859 0.94183 0.90987 0.92007 0.91918 0.94097 0.91831 0.92105 0.92122 0.94339 0.97822 0.94470 0.94255 0.92264 0.88751 0.92044 0.94116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.19 13.91 67.78 0.94 -2.25 16 2 C -0.16 -3.83 5.05 -16.48 -0.08 -3.92 16 3 C -0.11 -2.67 9.73 71.24 0.69 -1.98 16 4 C 0.15 4.42 1.87 29.85 0.06 4.48 16 5 H 0.07 1.99 7.25 -2.39 -0.02 1.97 16 6 C -0.13 -4.18 5.25 29.84 0.16 -4.03 16 7 C 0.51 20.06 7.71 87.66 0.68 20.74 16 8 O -0.59 -26.24 15.42 10.74 0.17 -26.07 16 9 N -0.69 -27.34 4.71 -463.06 -2.18 -29.52 16 10 C 0.14 5.26 4.53 86.38 0.39 5.65 16 11 C 0.17 6.36 2.19 45.99 0.10 6.46 16 12 H 0.06 1.99 8.06 -2.39 -0.02 1.97 16 13 C -0.13 -4.12 5.06 29.40 0.15 -3.97 16 14 C -0.10 -2.81 5.16 28.62 0.15 -2.67 16 15 C -0.10 -3.28 5.51 29.76 0.16 -3.12 16 16 C -0.13 -4.42 5.71 30.22 0.17 -4.25 16 17 C 0.19 8.20 4.66 86.48 0.40 8.60 16 18 N -0.59 -25.58 1.77 -674.25 -1.20 -26.77 16 19 C -0.23 -11.55 7.64 84.03 0.64 -10.91 16 20 H 0.04 2.37 6.72 -2.91 -0.02 2.36 16 21 C -0.02 -1.22 4.89 84.86 0.41 -0.81 16 22 N -0.92 -49.37 11.03 21.65 0.24 -49.13 16 23 Si 0.93 45.62 29.58 68.60 2.03 47.65 16 24 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 25 H -0.30 -14.73 7.11 99.48 0.71 -14.03 16 26 H -0.29 -14.72 7.11 99.48 0.71 -14.01 16 27 O -0.39 -13.76 8.76 -135.18 -1.18 -14.95 16 28 C 0.06 1.78 6.46 71.98 0.46 2.25 16 29 C -0.15 -3.81 10.28 71.98 0.74 -3.07 16 30 H 0.10 1.80 7.84 -2.91 -0.02 1.77 16 31 H 0.12 1.78 8.04 -2.91 -0.02 1.75 16 32 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.08 1.47 8.06 -2.39 -0.02 1.45 16 34 H 0.05 1.38 7.72 -2.39 -0.02 1.36 16 35 H 0.13 3.26 8.14 -2.38 -0.02 3.24 16 36 H 0.09 3.19 8.04 -2.38 -0.02 3.17 16 37 H 0.41 16.53 8.07 -92.71 -0.75 15.79 16 38 H 0.03 1.54 6.83 -2.39 -0.02 1.52 16 39 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.07 1.98 8.11 -2.39 -0.02 1.96 16 42 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.06 1.61 7.35 -2.39 -0.02 1.59 16 44 H 0.04 1.57 7.48 -2.38 -0.02 1.55 16 45 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 46 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 47 H 0.06 1.84 7.31 -2.39 -0.02 1.82 16 48 H 0.04 1.93 6.39 -2.39 -0.02 1.91 16 49 H 0.00 0.17 8.02 -2.39 -0.02 0.15 16 50 H 0.25 13.23 8.31 -92.71 -0.77 12.46 16 51 H 0.04 1.20 8.09 -2.38 -0.02 1.18 16 52 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 53 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 54 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 55 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -61.97 425.45 4.19 -57.79 By element: Atomic # 1 Polarization: 33.71 SS G_CDS: 0.09 Total: 33.79 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: 6.23 Total: 7.21 kcal Atomic # 7 Polarization: -102.28 SS G_CDS: -3.14 Total: -105.42 kcal Atomic # 8 Polarization: -40.00 SS G_CDS: -1.02 Total: -41.02 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -61.97 4.19 -57.79 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675253840.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.270 kcal (2) G-P(sol) polarization free energy of solvation -61.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds