Wall clock time and date at job start Tue Mar 31 2020 22:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42896 * 113.99804 * 2 1 4 4 H 1.08998 * 109.47213 * 29.99599 * 3 2 1 5 5 C 1.50703 * 109.47022 * 269.99641 * 3 2 1 6 6 O 1.21275 * 119.99980 * 355.00178 * 5 3 2 7 7 N 1.34781 * 119.99536 * 175.00488 * 5 3 2 8 8 C 1.46500 * 119.99336 * 180.02562 * 7 5 3 9 9 C 1.53006 * 109.46613 * 179.97438 * 8 7 5 10 10 H 1.09000 * 109.42822 * 64.93394 * 9 8 7 11 11 C 1.55424 * 109.70548 * 185.07889 * 9 8 7 12 12 C 1.47094 * 110.34367 * 191.29561 * 11 9 8 13 13 C 1.52568 * 114.32672 * 297.11891 * 12 11 9 14 14 C 1.50880 * 109.35295 * 85.02190 * 13 12 11 15 15 C 1.53946 * 110.09554 * 268.11428 * 14 13 12 16 16 N 1.44572 * 109.44787 * 304.99490 * 9 8 7 17 17 C 1.36932 * 118.64635 * 329.23691 * 16 9 8 18 18 H 1.08006 * 120.00310 * 329.04851 * 17 16 9 19 19 C 1.38814 * 120.00015 * 149.04368 * 17 16 9 20 20 N 1.31620 * 120.00239 * 139.93003 * 19 17 16 21 21 Si 1.86803 * 119.99758 * 319.92480 * 19 17 16 22 22 H 1.48501 * 109.47210 * 269.99987 * 21 19 17 23 23 H 1.48500 * 109.46907 * 150.00077 * 21 19 17 24 24 H 1.48496 * 109.47211 * 30.00275 * 21 19 17 25 25 C 1.53000 * 109.46971 * 149.99709 * 3 2 1 26 26 C 1.54268 * 110.03222 * 57.16474 * 25 3 2 27 27 C 1.54885 * 104.19435 * 217.10565 * 26 25 3 28 28 C 1.54888 * 102.75154 * 37.94448 * 27 26 25 29 29 C 1.53877 * 110.03400 * 299.99991 * 25 3 2 30 30 H 1.08995 * 109.47346 * 300.00230 * 1 2 3 31 31 H 1.09003 * 109.47125 * 60.00339 * 1 2 3 32 32 H 1.08997 * 109.47250 * 179.97438 * 1 2 3 33 33 H 0.96999 * 120.00128 * 359.97438 * 7 5 3 34 34 H 1.09000 * 109.47440 * 59.99665 * 8 7 5 35 35 H 1.09005 * 109.46957 * 299.99123 * 8 7 5 36 36 H 1.09000 * 109.37624 * 70.98827 * 11 9 8 37 37 H 1.08997 * 109.11951 * 311.43733 * 11 9 8 38 38 H 1.09000 * 108.51330 * 175.86968 * 12 11 9 39 39 H 1.08996 * 108.39251 * 58.28447 * 12 11 9 40 40 H 1.08998 * 109.49631 * 325.06049 * 13 12 11 41 41 H 1.09000 * 109.49434 * 204.98712 * 13 12 11 42 42 H 1.09000 * 109.37142 * 147.92460 * 14 13 12 43 43 H 1.09000 * 109.26415 * 28.24014 * 14 13 12 44 44 H 1.09003 * 108.94814 * 279.87229 * 15 14 13 45 45 H 1.08999 * 108.94933 * 161.24937 * 15 14 13 46 46 H 0.97000 * 119.99507 * 356.29561 * 20 19 17 47 47 H 1.09000 * 110.01741 * 178.60613 * 25 3 2 48 48 H 1.08995 * 110.48680 * 335.78648 * 26 25 3 49 49 H 1.09003 * 110.48414 * 98.42560 * 26 25 3 50 50 H 1.09000 * 110.76092 * 279.62538 * 27 26 25 51 51 H 1.09001 * 110.75498 * 156.25744 * 27 26 25 52 52 H 1.09001 * 110.48614 * 203.37619 * 28 27 26 53 53 H 1.08995 * 110.48762 * 80.73095 * 28 27 26 54 54 H 1.09001 * 110.03183 * 238.56987 * 29 25 3 55 55 H 1.09004 * 110.03152 * 359.97438 * 29 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9993 0.5138 5 6 2.2146 1.7643 -1.4209 6 8 1.9792 1.0105 -2.3413 7 7 2.6590 3.0124 -1.6685 8 6 2.8571 3.4586 -3.0498 9 6 3.3621 4.9029 -3.0516 10 1 4.3486 4.9427 -2.5899 11 6 3.4518 5.4249 -4.5128 12 6 4.1820 6.7011 -4.5560 13 6 3.5082 7.8369 -3.7921 14 6 3.9056 7.7664 -2.3382 15 6 2.8838 6.9263 -1.5507 16 7 2.4462 5.7340 -2.3028 17 6 1.1188 5.3981 -2.2862 18 1 0.6761 4.9037 -3.1383 19 6 0.3422 5.6929 -1.1740 20 7 -0.8894 6.1309 -1.3287 21 14 1.0449 5.4678 0.5421 22 1 0.7596 4.0900 1.0170 23 1 0.4201 6.4490 1.4653 24 1 2.5134 5.6857 0.5082 25 6 3.3588 1.2633 0.7213 26 6 4.2869 0.2319 0.0468 27 6 5.0607 -0.4103 1.2248 28 6 3.9819 -0.5031 2.3324 29 6 3.1650 0.7959 2.1745 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 2.8469 3.6154 -0.9323 34 1 1.9111 3.4041 -3.5885 35 1 3.5906 2.8163 -3.5374 36 1 2.4462 5.5711 -4.9070 37 1 3.9751 4.6890 -5.1233 38 1 4.2916 7.0021 -5.5979 39 1 5.1755 6.5433 -4.1362 40 1 2.4259 7.7414 -3.8782 41 1 3.8236 8.7932 -4.2093 42 1 3.9411 8.7739 -1.9239 43 1 4.8907 7.3071 -2.2565 44 1 2.0135 7.5441 -1.3290 45 1 3.3368 6.6063 -0.6124 46 1 -1.2361 6.2989 -2.2189 47 1 3.8217 2.2500 0.7050 48 1 3.7010 -0.5210 -0.4804 49 1 4.9757 0.7282 -0.6368 50 1 5.8845 0.2298 1.5406 51 1 5.4227 -1.4022 0.9542 52 1 4.4483 -0.5433 3.3168 53 1 3.3468 -1.3747 2.1743 54 1 3.5346 1.5555 2.8635 55 1 2.1100 0.5996 2.3660 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675270322.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:14 Heat of formation + Delta-G solvation = -93.461045 kcal Electronic energy + Delta-G solvation = -32873.815156 eV Core-core repulsion = 28909.944696 eV Total energy + Delta-G solvation = -3963.870461 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.41783 -40.03304 -38.91631 -37.72386 -36.07803 -35.28116 -33.49243 -33.13042 -31.74588 -29.57711 -28.83478 -27.65444 -27.32275 -26.08587 -24.98976 -23.58655 -21.98406 -21.48527 -21.11323 -21.05373 -20.56074 -19.08848 -18.30737 -17.84930 -17.25414 -16.95814 -16.62570 -16.45132 -16.25104 -15.80535 -15.54338 -15.44573 -15.41148 -15.08453 -14.72811 -14.44726 -14.16118 -14.14007 -14.04242 -13.72344 -13.65820 -13.48903 -12.91656 -12.84652 -12.67816 -12.51523 -12.33044 -12.13173 -11.93958 -11.87046 -11.77976 -11.71523 -11.62154 -11.58197 -11.47833 -11.45550 -11.36590 -11.33319 -11.28463 -10.86962 -10.26616 -10.24818 -9.92278 -8.92149 -8.44932 -5.34836 1.44889 1.48835 1.58985 1.69007 2.16213 2.61637 2.75303 2.96288 3.43388 3.54105 3.62004 3.78186 3.89044 3.94349 4.00011 4.04254 4.18806 4.31233 4.33190 4.37134 4.38181 4.46193 4.49903 4.52689 4.60047 4.63978 4.68650 4.70970 4.74145 4.83319 4.87578 4.90451 4.93752 4.99380 5.01568 5.13127 5.13474 5.14265 5.18911 5.28379 5.34104 5.35189 5.40473 5.44321 5.49881 5.53008 5.56999 5.58313 5.68184 5.92815 6.02193 6.36326 6.60927 7.01299 7.26303 7.79879 8.19898 8.83235 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012319 B = 0.004392 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.417535 B = 6373.655876 C = 6933.588039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.360 6.360 3 C 0.076 3.924 4 H 0.079 0.921 5 C 0.488 3.512 6 O -0.581 6.581 7 N -0.691 5.691 8 C 0.137 3.863 9 C 0.170 3.830 10 H 0.075 0.925 11 C -0.126 4.126 12 C -0.100 4.100 13 C -0.107 4.107 14 C -0.127 4.127 15 C 0.134 3.866 16 N -0.591 5.591 17 C -0.329 4.329 18 H 0.014 0.986 19 C -0.038 4.038 20 N -0.934 5.934 21 Si 1.029 2.971 22 H -0.285 1.285 23 H -0.309 1.309 24 H -0.221 1.221 25 C -0.086 4.086 26 C -0.117 4.117 27 C -0.115 4.115 28 C -0.115 4.115 29 C -0.116 4.116 30 H 0.055 0.945 31 H 0.017 0.983 32 H 0.113 0.887 33 H 0.402 0.598 34 H 0.028 0.972 35 H 0.069 0.931 36 H 0.027 0.973 37 H 0.071 0.929 38 H 0.058 0.942 39 H 0.072 0.928 40 H 0.032 0.968 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.031 0.969 45 H 0.038 0.962 46 H 0.250 0.750 47 H 0.096 0.904 48 H 0.054 0.946 49 H 0.060 0.940 50 H 0.080 0.920 51 H 0.070 0.930 52 H 0.082 0.918 53 H 0.059 0.941 54 H 0.083 0.917 55 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.082 -6.009 6.153 17.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.277 6.277 3 C 0.015 3.985 4 H 0.097 0.903 5 C 0.274 3.726 6 O -0.461 6.461 7 N -0.341 5.341 8 C 0.013 3.987 9 C 0.062 3.938 10 H 0.093 0.907 11 C -0.167 4.167 12 C -0.138 4.138 13 C -0.144 4.144 14 C -0.165 4.165 15 C 0.010 3.990 16 N -0.315 5.315 17 C -0.458 4.458 18 H 0.032 0.968 19 C -0.237 4.237 20 N -0.573 5.573 21 Si 0.854 3.146 22 H -0.212 1.212 23 H -0.237 1.237 24 H -0.145 1.145 25 C -0.105 4.105 26 C -0.154 4.154 27 C -0.153 4.153 28 C -0.153 4.153 29 C -0.153 4.153 30 H 0.074 0.926 31 H 0.036 0.964 32 H 0.131 0.869 33 H 0.237 0.763 34 H 0.047 0.953 35 H 0.087 0.913 36 H 0.046 0.954 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.051 0.949 41 H 0.084 0.916 42 H 0.091 0.909 43 H 0.094 0.906 44 H 0.050 0.950 45 H 0.056 0.944 46 H 0.059 0.941 47 H 0.114 0.886 48 H 0.073 0.927 49 H 0.079 0.921 50 H 0.099 0.901 51 H 0.089 0.911 52 H 0.101 0.899 53 H 0.078 0.922 54 H 0.102 0.898 55 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 14.690 -6.603 7.081 17.594 hybrid contribution -1.353 0.605 -2.038 2.520 sum 13.337 -5.998 5.043 15.469 Atomic orbital electron populations 1.22973 0.80281 1.04183 0.99660 1.87895 1.20451 1.25028 1.94323 1.22236 0.98431 0.86552 0.91314 0.90284 1.21671 0.76438 0.81845 0.92642 1.90607 1.52643 1.55409 1.47469 1.45735 1.65819 1.13036 1.09542 1.21376 0.99161 0.95661 0.82545 1.20876 0.93278 0.87247 0.92379 0.90688 1.21325 0.99401 0.98227 0.97705 1.20276 0.99280 0.94084 1.00115 1.20925 0.99676 0.98142 0.95704 1.21852 0.99056 1.00004 0.95635 1.21749 0.96267 0.87200 0.93808 1.43967 1.03847 1.25407 1.58259 1.19393 0.86061 1.41187 0.99195 0.96826 1.26967 0.94657 0.96817 1.05233 1.71010 1.21274 1.40544 1.24505 0.84589 0.78727 0.76889 0.74357 1.21203 1.23731 1.14528 1.22014 0.91019 1.01291 0.96163 1.22319 0.97258 0.97641 0.98211 1.22458 0.97669 1.00865 0.94267 1.22287 0.96859 0.96868 0.99251 1.22158 1.00949 0.98575 0.93626 0.92617 0.96402 0.86917 0.76259 0.95345 0.91321 0.95412 0.91029 0.92362 0.90944 0.94902 0.91572 0.90940 0.90604 0.95007 0.94409 0.94117 0.88613 0.92734 0.92133 0.90131 0.91081 0.89925 0.92246 0.89828 0.92118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 10.81 113.37 1.23 1.99 16 2 O -0.36 -12.06 8.34 -129.99 -1.08 -13.15 16 3 C 0.08 2.55 2.05 29.85 0.06 2.61 16 4 H 0.08 2.75 7.14 -2.39 -0.02 2.73 16 5 C 0.49 19.40 6.54 87.66 0.57 19.97 16 6 O -0.58 -27.19 16.51 15.98 0.26 -26.93 16 7 N -0.69 -26.15 4.68 -463.04 -2.17 -28.32 16 8 C 0.14 5.24 4.55 86.38 0.39 5.63 16 9 C 0.17 5.86 2.21 46.19 0.10 5.96 16 10 H 0.08 2.23 8.07 -2.39 -0.02 2.21 16 11 C -0.13 -4.01 5.09 29.59 0.15 -3.86 16 12 C -0.10 -2.69 5.16 28.61 0.15 -2.54 16 13 C -0.11 -3.19 5.51 29.76 0.16 -3.03 16 14 C -0.13 -3.62 5.71 30.22 0.17 -3.44 16 15 C 0.13 4.97 4.35 86.49 0.38 5.35 16 16 N -0.59 -24.20 1.44 -673.14 -0.97 -25.17 16 17 C -0.33 -16.95 7.57 84.03 0.64 -16.31 16 18 H 0.01 0.84 7.05 -2.91 -0.02 0.82 16 19 C -0.04 -2.06 4.60 84.86 0.39 -1.67 16 20 N -0.93 -56.90 13.71 21.65 0.30 -56.60 16 21 Si 1.03 45.60 25.98 68.60 1.78 47.38 16 22 H -0.28 -11.99 6.46 99.48 0.64 -11.35 16 23 H -0.31 -14.65 7.11 99.48 0.71 -13.94 16 24 H -0.22 -8.06 4.94 99.48 0.49 -7.57 16 25 C -0.09 -2.23 2.79 -10.07 -0.03 -2.25 16 26 C -0.12 -2.94 5.67 31.67 0.18 -2.76 16 27 C -0.12 -2.14 6.91 31.88 0.22 -1.92 16 28 C -0.12 -2.10 6.83 31.67 0.22 -1.88 16 29 C -0.12 -2.44 6.22 31.32 0.19 -2.25 16 30 H 0.06 1.49 8.08 -2.39 -0.02 1.47 16 31 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 33 H 0.40 14.45 6.28 -92.71 -0.58 13.87 16 34 H 0.03 1.32 6.90 -2.39 -0.02 1.30 16 35 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 36 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.07 1.96 8.11 -2.39 -0.02 1.94 16 38 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.07 1.64 7.35 -2.39 -0.02 1.63 16 40 H 0.03 1.26 7.48 -2.39 -0.02 1.24 16 41 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.08 1.83 7.31 -2.39 -0.02 1.81 16 44 H 0.03 1.38 6.79 -2.39 -0.02 1.37 16 45 H 0.04 1.32 5.82 -2.39 -0.01 1.31 16 46 H 0.25 15.64 8.73 -92.71 -0.81 14.83 16 47 H 0.10 2.26 7.93 -2.39 -0.02 2.24 16 48 H 0.05 1.68 7.12 -2.39 -0.02 1.66 16 49 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 50 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 51 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 52 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 53 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 54 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 55 H 0.06 1.39 7.42 -2.38 -0.02 1.37 16 Total: -1.00 -68.21 405.16 3.25 -64.97 By element: Atomic # 1 Polarization: 38.28 SS G_CDS: -0.05 Total: 38.23 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: 5.18 Total: -0.41 kcal Atomic # 7 Polarization: -107.25 SS G_CDS: -2.84 Total: -110.09 kcal Atomic # 8 Polarization: -39.26 SS G_CDS: -0.82 Total: -40.08 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 1.78 Total: 47.38 kcal Total: -68.21 3.25 -64.97 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675270322.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.493 kcal (2) G-P(sol) polarization free energy of solvation -68.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds