Wall clock time and date at job start Tue Mar 31 2020 22:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42900 * 114.00307 * 2 1 4 4 H 1.09000 * 109.46780 * 29.99426 * 3 2 1 5 5 C 1.50695 * 109.46849 * 269.99654 * 3 2 1 6 6 O 1.21280 * 120.00203 * 353.17587 * 5 3 2 7 7 N 1.34776 * 120.00131 * 173.44192 * 5 3 2 8 8 C 1.46501 * 120.00597 * 184.26898 * 7 5 3 9 9 C 1.52996 * 109.47358 * 174.99056 * 8 7 5 10 10 H 1.09003 * 109.45121 * 295.74779 * 9 8 7 11 11 C 1.54863 * 109.45001 * 175.79716 * 9 8 7 12 12 C 1.47092 * 110.32190 * 168.69186 * 11 9 8 13 13 C 1.52577 * 114.32638 * 62.80260 * 12 11 9 14 14 C 1.50877 * 109.35670 * 274.98790 * 13 12 11 15 15 C 1.53951 * 110.09574 * 91.88766 * 14 13 12 16 16 N 1.44579 * 109.44820 * 55.66358 * 9 8 7 17 17 C 1.36930 * 118.64387 * 30.76790 * 16 9 8 18 18 H 1.08001 * 120.00101 * 32.65669 * 17 16 9 19 19 C 1.38810 * 120.00111 * 212.65887 * 17 16 9 20 20 N 1.31625 * 120.00091 * 7.97887 * 19 17 16 21 21 Si 1.86798 * 120.00276 * 187.98234 * 19 17 16 22 22 H 1.48498 * 109.47449 * 65.05080 * 21 19 17 23 23 H 1.48500 * 109.47641 * 185.05360 * 21 19 17 24 24 H 1.48503 * 109.46811 * 305.05235 * 21 19 17 25 25 C 1.52993 * 109.47335 * 149.99861 * 3 2 1 26 26 C 1.54270 * 110.03557 * 51.85826 * 25 3 2 27 27 C 1.54967 * 104.16190 * 217.13675 * 26 25 3 28 28 C 1.54898 * 102.77517 * 37.88873 * 27 26 25 29 29 C 1.53879 * 110.03385 * 294.64337 * 25 3 2 30 30 H 1.09004 * 109.47346 * 60.00363 * 1 2 3 31 31 H 1.09004 * 109.47328 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47516 * 300.00108 * 1 2 3 33 33 H 0.97008 * 119.99659 * 4.27892 * 7 5 3 34 34 H 1.08995 * 109.47072 * 294.99740 * 8 7 5 35 35 H 1.09004 * 109.46404 * 54.99294 * 8 7 5 36 36 H 1.08997 * 109.32735 * 288.95191 * 11 9 8 37 37 H 1.08997 * 109.32848 * 48.43361 * 11 9 8 38 38 H 1.08996 * 108.51183 * 184.05136 * 12 11 9 39 39 H 1.09002 * 108.51722 * 301.70615 * 12 11 9 40 40 H 1.09000 * 109.48881 * 34.95314 * 13 12 11 41 41 H 1.08996 * 109.49012 * 154.99486 * 13 12 11 42 42 H 1.09004 * 109.36674 * 212.07598 * 14 13 12 43 43 H 1.08997 * 109.37072 * 331.82030 * 14 13 12 44 44 H 1.08992 * 108.94858 * 80.11860 * 15 14 13 45 45 H 1.09006 * 108.94119 * 198.83667 * 15 14 13 46 46 H 0.97000 * 119.99751 * 180.02562 * 20 19 17 47 47 H 1.09003 * 110.01830 * 173.25252 * 25 3 2 48 48 H 1.08996 * 110.48454 * 335.78527 * 26 25 3 49 49 H 1.08995 * 110.48474 * 98.42788 * 26 25 3 50 50 H 1.08996 * 110.72049 * 279.57238 * 27 26 25 51 51 H 1.08997 * 110.91913 * 156.29305 * 27 26 25 52 52 H 1.09000 * 110.48311 * 203.40658 * 28 27 26 53 53 H 1.08994 * 110.59682 * 80.81585 * 28 27 26 54 54 H 1.09000 * 110.03135 * 238.57088 * 29 25 3 55 55 H 1.09008 * 110.03001 * 359.94976 * 29 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9993 0.5138 5 6 2.2146 1.7642 -1.4208 6 8 2.0109 0.9999 -2.3401 7 7 2.6289 3.0223 -1.6697 8 6 2.7379 3.4980 -3.0511 9 6 3.1049 4.9833 -3.0516 10 1 2.2959 5.5572 -2.5997 11 6 3.3239 5.4598 -4.5087 12 6 3.4107 6.9273 -4.5587 13 6 4.5899 7.5137 -3.7884 14 6 4.2075 7.6791 -2.3383 15 6 4.5976 6.4210 -1.5415 16 7 4.3178 5.1797 -2.2896 17 6 5.2452 4.1727 -2.2608 18 1 5.3741 3.5325 -3.1210 19 6 6.0197 3.9747 -1.1260 20 7 5.7584 4.6474 -0.0252 21 14 7.4329 2.7536 -1.1610 22 1 8.4722 3.2262 -2.1106 23 1 8.0203 2.6370 0.1979 24 1 6.9296 1.4266 -1.5982 25 6 3.3588 1.2632 0.7212 26 6 4.2382 0.1407 0.1325 27 6 4.9878 -0.4368 1.3596 28 6 3.9108 -0.3904 2.4719 29 6 3.1511 0.9260 2.2082 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 2.8551 3.6129 -0.9341 34 1 3.5115 2.9323 -3.5701 35 1 1.7836 3.3593 -3.5593 36 1 4.2488 5.0304 -4.8936 37 1 2.4899 5.1266 -5.1264 38 1 3.4917 7.2339 -5.6015 39 1 2.4906 7.3427 -4.1474 40 1 5.4446 6.8415 -3.8647 41 1 4.8523 8.4845 -4.2087 42 1 4.7255 8.5442 -1.9242 43 1 3.1310 7.8326 -2.2636 44 1 5.6623 6.4635 -1.3119 45 1 4.0349 6.4046 -0.6081 46 1 6.2999 4.5092 0.7676 47 1 3.8645 2.2239 0.6234 48 1 3.6178 -0.6263 -0.3311 49 1 4.9450 0.5490 -0.5898 50 1 5.8402 0.1902 1.6209 51 1 5.3070 -1.4622 1.1735 52 1 4.3792 -0.3700 3.4559 53 1 3.2369 -1.2430 2.3889 54 1 3.5567 1.7226 2.8319 55 1 2.0893 0.7933 2.4161 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675270323.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:19 Heat of formation + Delta-G solvation = -95.006494 kcal Electronic energy + Delta-G solvation = -33094.037505 eV Core-core repulsion = 29130.100028 eV Total energy + Delta-G solvation = -3963.937476 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.29302 -39.88260 -38.85691 -37.66079 -35.93761 -35.16985 -33.37753 -32.47318 -31.65839 -29.61281 -28.67440 -27.55688 -27.39746 -25.91773 -25.16045 -23.49527 -21.87855 -21.44922 -21.05823 -20.75118 -20.48858 -18.76713 -17.83017 -17.67407 -17.23149 -16.96273 -16.41778 -16.22144 -16.14349 -15.94075 -15.51762 -15.20026 -15.17031 -15.01964 -14.66777 -14.28107 -14.17732 -13.96016 -13.80507 -13.54748 -13.37591 -13.12513 -12.87616 -12.85511 -12.72243 -12.52910 -12.40439 -12.27346 -12.03591 -11.98207 -11.89498 -11.66854 -11.57586 -11.55077 -11.40355 -11.37668 -11.36597 -11.28030 -11.20143 -10.95968 -10.34529 -10.15605 -9.77767 -8.44343 -7.76400 -5.25323 1.39273 1.43524 1.48176 1.69177 2.32455 2.52801 2.86681 3.39663 3.57839 3.63370 3.71451 3.78667 3.94423 4.05567 4.07260 4.10946 4.28457 4.30505 4.44910 4.49215 4.52155 4.55183 4.58480 4.62640 4.66537 4.69187 4.73851 4.80330 4.82176 4.84889 4.88149 4.98389 5.02503 5.07711 5.10232 5.15419 5.20780 5.27621 5.27931 5.31784 5.39278 5.44232 5.47461 5.49589 5.56905 5.67072 5.71759 5.77815 5.83270 5.94955 6.09297 6.53017 6.78904 7.31941 7.39862 8.02864 8.43094 9.25641 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011769 B = 0.004906 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.646209 B = 5705.452756 C = 7063.440466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.369 6.369 3 C 0.093 3.907 4 H 0.104 0.896 5 C 0.483 3.517 6 O -0.587 6.587 7 N -0.688 5.688 8 C 0.134 3.866 9 C 0.176 3.824 10 H 0.058 0.942 11 C -0.129 4.129 12 C -0.100 4.100 13 C -0.103 4.103 14 C -0.133 4.133 15 C 0.191 3.809 16 N -0.586 5.586 17 C -0.237 4.237 18 H 0.038 0.962 19 C -0.005 4.005 20 N -0.909 5.909 21 Si 0.915 3.085 22 H -0.293 1.293 23 H -0.290 1.290 24 H -0.291 1.291 25 C -0.082 4.082 26 C -0.115 4.115 27 C -0.124 4.124 28 C -0.109 4.109 29 C -0.106 4.106 30 H 0.029 0.971 31 H 0.103 0.897 32 H 0.065 0.935 33 H 0.410 0.590 34 H 0.034 0.966 35 H 0.062 0.938 36 H 0.039 0.961 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.040 0.960 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.037 0.963 45 H 0.007 0.993 46 H 0.248 0.752 47 H 0.076 0.924 48 H 0.066 0.934 49 H 0.025 0.975 50 H 0.052 0.948 51 H 0.072 0.928 52 H 0.078 0.922 53 H 0.074 0.926 54 H 0.069 0.931 55 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.592 -0.502 3.232 10.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.286 6.286 3 C 0.031 3.969 4 H 0.122 0.878 5 C 0.269 3.731 6 O -0.468 6.468 7 N -0.339 5.339 8 C 0.009 3.991 9 C 0.068 3.932 10 H 0.076 0.924 11 C -0.169 4.169 12 C -0.137 4.137 13 C -0.141 4.141 14 C -0.172 4.172 15 C 0.067 3.933 16 N -0.308 5.308 17 C -0.368 4.368 18 H 0.056 0.944 19 C -0.203 4.203 20 N -0.554 5.554 21 Si 0.746 3.254 22 H -0.221 1.221 23 H -0.216 1.216 24 H -0.218 1.218 25 C -0.101 4.101 26 C -0.153 4.153 27 C -0.161 4.161 28 C -0.146 4.146 29 C -0.144 4.144 30 H 0.047 0.953 31 H 0.121 0.879 32 H 0.084 0.916 33 H 0.246 0.754 34 H 0.053 0.947 35 H 0.081 0.919 36 H 0.058 0.942 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.059 0.941 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.056 0.944 45 H 0.025 0.975 46 H 0.057 0.943 47 H 0.095 0.905 48 H 0.085 0.915 49 H 0.044 0.956 50 H 0.071 0.929 51 H 0.091 0.909 52 H 0.097 0.903 53 H 0.093 0.907 54 H 0.087 0.913 55 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.583 -1.173 2.773 10.045 hybrid contribution 1.443 -0.286 -0.109 1.475 sum -8.141 -1.458 2.664 8.689 Atomic orbital electron populations 1.23018 0.79728 1.04110 1.00336 1.87949 1.21160 1.25185 1.94353 1.21994 0.97241 0.86723 0.90922 0.87807 1.21764 0.76794 0.81770 0.92753 1.90598 1.54235 1.54339 1.47672 1.45813 1.64849 1.13396 1.09803 1.21401 0.98949 0.95898 0.82806 1.20647 0.88783 0.91720 0.92079 0.92443 1.21285 1.00880 0.97033 0.97711 1.20269 0.98307 0.95150 0.99980 1.20901 0.98371 0.99577 0.95217 1.21955 1.00666 0.98292 0.96282 1.20789 0.98485 0.83071 0.91003 1.43686 1.16524 1.13220 1.57391 1.18787 1.13681 1.08668 0.95644 0.94406 1.25177 1.00869 0.98904 0.95313 1.70028 1.40415 1.43939 1.01012 0.86200 0.82074 0.80887 0.76193 1.22071 1.21621 1.21763 1.21845 0.92153 0.99780 0.96323 1.22250 0.97546 0.97855 0.97632 1.22487 0.97966 1.00537 0.95126 1.22255 0.96733 0.97632 0.98010 1.22095 1.01542 0.98009 0.92747 0.95251 0.87904 0.91641 0.75389 0.94719 0.91948 0.94223 0.91171 0.92124 0.91952 0.94069 0.91942 0.92130 0.92229 0.94400 0.97531 0.94258 0.90530 0.91493 0.95631 0.92919 0.90914 0.90304 0.90719 0.91258 0.90099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.56 10.81 113.37 1.23 1.79 16 2 O -0.37 -11.64 8.34 -130.03 -1.09 -12.73 16 3 C 0.09 3.01 1.98 29.84 0.06 3.07 16 4 H 0.10 2.79 7.79 -2.39 -0.02 2.77 16 5 C 0.48 19.19 6.69 87.66 0.59 19.78 16 6 O -0.59 -27.31 16.52 15.92 0.26 -27.05 16 7 N -0.69 -26.99 4.74 -463.07 -2.20 -29.19 16 8 C 0.13 5.21 4.53 86.38 0.39 5.60 16 9 C 0.18 6.35 2.20 45.99 0.10 6.45 16 10 H 0.06 1.96 8.06 -2.39 -0.02 1.94 16 11 C -0.13 -4.09 5.06 29.39 0.15 -3.94 16 12 C -0.10 -2.78 5.16 28.62 0.15 -2.64 16 13 C -0.10 -3.21 5.51 29.76 0.16 -3.05 16 14 C -0.13 -4.35 5.71 30.22 0.17 -4.17 16 15 C 0.19 8.01 4.63 86.49 0.40 8.41 16 16 N -0.59 -24.86 1.73 -674.25 -1.17 -26.03 16 17 C -0.24 -11.68 7.46 84.03 0.63 -11.05 16 18 H 0.04 2.03 6.90 -2.91 -0.02 2.01 16 19 C -0.01 -0.26 5.03 84.86 0.43 0.17 16 20 N -0.91 -46.45 10.99 21.65 0.24 -46.22 16 21 Si 0.91 44.21 29.56 68.60 2.03 46.24 16 22 H -0.29 -14.34 7.11 99.48 0.71 -13.64 16 23 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 24 H -0.29 -14.56 7.08 99.48 0.70 -13.85 16 25 C -0.08 -2.76 2.75 -10.07 -0.03 -2.79 16 26 C -0.12 -4.29 5.84 31.70 0.19 -4.10 16 27 C -0.12 -3.78 6.91 31.92 0.22 -3.56 16 28 C -0.11 -2.69 6.83 31.67 0.22 -2.47 16 29 C -0.11 -2.80 6.29 31.32 0.20 -2.60 16 30 H 0.03 0.75 8.14 -2.38 -0.02 0.74 16 31 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.07 1.17 8.08 -2.39 -0.02 1.15 16 33 H 0.41 16.50 7.66 -92.70 -0.71 15.79 16 34 H 0.03 1.56 6.90 -2.39 -0.02 1.54 16 35 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.07 1.93 8.11 -2.39 -0.02 1.91 16 38 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.06 1.59 7.35 -2.39 -0.02 1.57 16 40 H 0.04 1.56 7.48 -2.39 -0.02 1.54 16 41 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 43 H 0.06 1.77 7.31 -2.39 -0.02 1.76 16 44 H 0.04 1.84 6.57 -2.39 -0.02 1.83 16 45 H 0.01 0.30 7.97 -2.38 -0.02 0.28 16 46 H 0.25 12.74 8.31 -92.71 -0.77 11.97 16 47 H 0.08 3.03 7.78 -2.39 -0.02 3.02 16 48 H 0.07 2.60 6.91 -2.39 -0.02 2.59 16 49 H 0.02 1.12 8.11 -2.39 -0.02 1.10 16 50 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 51 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 52 H 0.08 1.65 8.14 -2.39 -0.02 1.64 16 53 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 54 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 55 H 0.08 1.83 7.58 -2.38 -0.02 1.81 16 Total: -1.00 -59.66 413.16 3.45 -56.21 By element: Atomic # 1 Polarization: 33.74 SS G_CDS: 0.13 Total: 33.87 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: 5.24 Total: 4.89 kcal Atomic # 7 Polarization: -98.30 SS G_CDS: -3.13 Total: -101.43 kcal Atomic # 8 Polarization: -38.95 SS G_CDS: -0.82 Total: -39.77 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -59.66 3.45 -56.21 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675270323.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.796 kcal (2) G-P(sol) polarization free energy of solvation -59.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds