Wall clock time and date at job start Tue Mar 31 2020 22:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42896 * 114.00082 * 2 1 4 4 H 1.08996 * 109.47099 * 358.69926 * 3 2 1 5 5 C 1.50695 * 109.47254 * 118.70464 * 3 2 1 6 6 O 1.21290 * 120.00262 * 21.06755 * 5 3 2 7 7 N 1.34781 * 120.00087 * 201.06648 * 5 3 2 8 8 C 1.46497 * 120.00067 * 174.29629 * 7 5 3 9 9 C 1.52999 * 109.47242 * 180.02562 * 8 7 5 10 10 H 1.09000 * 109.42706 * 64.93568 * 9 8 7 11 11 C 1.55420 * 109.70977 * 185.08293 * 9 8 7 12 12 C 1.47091 * 110.34403 * 191.29098 * 11 9 8 13 13 C 1.52565 * 114.33284 * 297.12400 * 12 11 9 14 14 C 1.50879 * 109.35533 * 85.01744 * 13 12 11 15 15 C 1.53947 * 110.09548 * 268.11839 * 14 13 12 16 16 N 1.44576 * 109.44797 * 305.00074 * 9 8 7 17 17 C 1.36936 * 118.64251 * 329.23871 * 16 9 8 18 18 H 1.08002 * 120.00205 * 337.39634 * 17 16 9 19 19 C 1.38820 * 119.99820 * 157.40340 * 17 16 9 20 20 N 1.31611 * 120.00258 * 340.00840 * 19 17 16 21 21 Si 1.86797 * 119.99780 * 160.01434 * 19 17 16 22 22 H 1.48500 * 109.47410 * 265.00868 * 21 19 17 23 23 H 1.48507 * 109.47422 * 145.00631 * 21 19 17 24 24 H 1.48504 * 109.47358 * 25.01143 * 21 19 17 25 25 C 1.53007 * 109.46839 * 238.70080 * 3 2 1 26 26 C 1.54268 * 110.02991 * 181.66753 * 25 3 2 27 27 C 1.54966 * 104.15739 * 217.13987 * 26 25 3 28 28 C 1.54885 * 102.77973 * 37.88833 * 27 26 25 29 29 C 1.53873 * 110.02805 * 64.45503 * 25 3 2 30 30 H 1.09000 * 109.47278 * 64.10086 * 1 2 3 31 31 H 1.09005 * 109.47529 * 184.09521 * 1 2 3 32 32 H 1.08999 * 109.47516 * 304.09768 * 1 2 3 33 33 H 0.96995 * 119.99651 * 354.30157 * 7 5 3 34 34 H 1.09001 * 109.47276 * 60.00068 * 8 7 5 35 35 H 1.09002 * 109.47272 * 300.00647 * 8 7 5 36 36 H 1.09007 * 109.37406 * 70.99123 * 11 9 8 37 37 H 1.08993 * 109.11913 * 311.44043 * 11 9 8 38 38 H 1.09005 * 108.51206 * 175.86747 * 12 11 9 39 39 H 1.09003 * 108.38696 * 58.29270 * 12 11 9 40 40 H 1.09002 * 109.49017 * 325.05728 * 13 12 11 41 41 H 1.09003 * 109.49191 * 204.98339 * 13 12 11 42 42 H 1.08999 * 109.36600 * 147.92406 * 14 13 12 43 43 H 1.08997 * 109.26366 * 28.24180 * 14 13 12 44 44 H 1.09002 * 108.94254 * 279.87456 * 15 14 13 45 45 H 1.09004 * 108.94660 * 161.24791 * 15 14 13 46 46 H 0.96995 * 120.00642 * 180.02562 * 20 19 17 47 47 H 1.08999 * 110.01760 * 303.05926 * 25 3 2 48 48 H 1.09003 * 110.48955 * 335.78591 * 26 25 3 49 49 H 1.08999 * 110.48334 * 98.43309 * 26 25 3 50 50 H 1.09004 * 110.72103 * 279.57320 * 27 26 25 51 51 H 1.09002 * 110.91868 * 156.29725 * 27 26 25 52 52 H 1.09001 * 110.48497 * 203.40206 * 28 27 26 53 53 H 1.09009 * 110.48569 * 80.76080 * 28 27 26 54 54 H 1.09006 * 110.02793 * 238.56521 * 29 25 3 55 55 H 1.09002 * 110.03508 * 359.97438 * 29 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.2194 2.0552 -0.0233 5 6 2.8379 1.4868 1.2462 6 8 3.2410 0.5170 1.8529 7 7 3.1302 2.7266 1.6865 8 6 3.8267 2.9054 2.9629 9 6 4.0339 4.3982 3.2261 10 1 3.0655 4.8817 3.3543 11 6 4.8840 4.5905 4.5129 12 6 4.8677 6.0008 4.9306 13 6 5.4896 6.9622 3.9224 14 6 4.4531 7.3512 2.8973 15 6 4.5164 6.3956 1.6920 16 7 4.7244 4.9935 2.1040 17 6 5.6035 4.2233 1.3905 18 1 6.0498 3.3512 1.8454 19 6 5.9212 4.5633 0.0827 20 7 5.1234 5.3532 -0.6042 21 14 7.4808 3.8997 -0.7023 22 1 8.5725 4.8952 -0.5530 23 1 7.2386 3.6433 -2.1449 24 1 7.8714 2.6327 -0.0333 25 6 2.9022 1.4664 -1.2326 26 6 3.5696 2.8572 -1.2238 27 6 3.5861 3.2792 -2.7148 28 6 2.2297 2.7443 -3.2373 29 6 2.0508 1.3944 -2.5123 30 1 -0.3634 0.4489 -0.9244 31 1 -0.3634 -1.0251 0.0734 32 1 -0.3634 0.5761 0.8510 33 1 2.8794 3.5005 1.1583 34 1 4.7944 2.4055 2.9219 35 1 3.2291 2.4746 3.7663 36 1 5.9116 4.2843 4.3166 37 1 4.4697 3.9733 5.3100 38 1 5.4092 6.0891 5.8725 39 1 3.8324 6.2976 5.0988 40 1 6.3282 6.4751 3.4248 41 1 5.8418 7.8544 4.4401 42 1 4.6423 8.3705 2.5608 43 1 3.4626 7.2978 3.3492 44 1 5.3375 6.6992 1.0425 45 1 3.5821 6.4659 1.1351 46 1 5.3451 5.5906 -1.5182 47 1 3.6639 0.6869 -1.2464 48 1 2.9797 3.5598 -0.6352 49 1 4.5854 2.7904 -0.8342 50 1 4.4160 2.8066 -3.2403 51 1 3.6369 4.3637 -2.8118 52 1 2.2684 2.5957 -4.3164 53 1 1.4229 3.4284 -2.9741 54 1 2.3999 0.5803 -3.1477 55 1 1.0023 1.2443 -2.2553 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675270324.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:24 Heat of formation + Delta-G solvation = -84.356485 kcal Electronic energy + Delta-G solvation = -33465.952526 eV Core-core repulsion = 29502.476869 eV Total energy + Delta-G solvation = -3963.475657 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.30466 -39.80658 -38.84789 -37.80796 -35.93310 -35.17809 -33.32251 -32.40494 -31.59560 -29.35465 -28.58405 -27.76971 -27.32496 -25.75305 -25.08968 -23.50763 -21.58616 -21.45253 -20.98108 -20.74917 -20.57817 -18.64768 -18.06038 -17.49222 -17.13661 -16.86820 -16.59988 -16.12350 -15.96404 -15.88694 -15.41170 -15.21392 -15.16227 -15.03401 -14.63996 -14.28588 -14.23094 -14.00744 -13.68217 -13.39234 -13.20818 -13.10872 -12.89910 -12.75748 -12.68590 -12.38302 -12.34998 -12.21579 -12.01259 -11.94702 -11.80462 -11.68769 -11.47317 -11.42460 -11.37226 -11.33541 -11.26999 -11.14534 -11.13468 -10.92845 -10.20487 -10.08715 -9.76249 -8.49049 -7.68255 -5.01100 1.40413 1.48404 1.53111 1.70448 2.19182 2.59868 2.98427 3.43830 3.65342 3.69141 3.75529 3.89751 3.99161 4.07122 4.09363 4.11813 4.30789 4.36326 4.47007 4.52059 4.53562 4.55967 4.63797 4.67498 4.71174 4.76701 4.79342 4.81916 4.84795 4.93189 4.95320 5.04885 5.11423 5.15989 5.18311 5.19776 5.28612 5.31162 5.41354 5.43184 5.46486 5.47955 5.58986 5.63547 5.69160 5.74015 5.76982 5.81530 5.89144 6.01928 6.10590 6.56236 6.80825 7.38578 7.41608 8.11484 8.48657 9.34375 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010883 B = 0.005322 C = 0.004247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2572.230011 B = 5259.949309 C = 6591.521328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.385 6.385 3 C 0.095 3.905 4 H 0.105 0.895 5 C 0.493 3.507 6 O -0.590 6.590 7 N -0.684 5.684 8 C 0.131 3.869 9 C 0.176 3.824 10 H 0.060 0.940 11 C -0.128 4.128 12 C -0.099 4.099 13 C -0.103 4.103 14 C -0.133 4.133 15 C 0.188 3.812 16 N -0.584 5.584 17 C -0.235 4.235 18 H 0.039 0.961 19 C 0.005 3.995 20 N -0.885 5.885 21 Si 0.896 3.104 22 H -0.300 1.300 23 H -0.294 1.294 24 H -0.299 1.299 25 C -0.099 4.099 26 C -0.085 4.085 27 C -0.113 4.113 28 C -0.114 4.114 29 C -0.103 4.103 30 H 0.065 0.935 31 H 0.101 0.899 32 H 0.046 0.954 33 H 0.411 0.589 34 H 0.036 0.964 35 H 0.062 0.938 36 H 0.039 0.961 37 H 0.068 0.932 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.041 0.959 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.048 0.952 45 H 0.007 0.993 46 H 0.247 0.753 47 H 0.049 0.951 48 H 0.066 0.934 49 H 0.049 0.951 50 H 0.040 0.960 51 H 0.063 0.937 52 H 0.075 0.925 53 H 0.075 0.925 54 H 0.066 0.934 55 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.171 0.785 0.950 11.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.303 6.303 3 C 0.034 3.966 4 H 0.123 0.877 5 C 0.279 3.721 6 O -0.472 6.472 7 N -0.336 5.336 8 C 0.006 3.994 9 C 0.068 3.932 10 H 0.078 0.922 11 C -0.169 4.169 12 C -0.136 4.136 13 C -0.140 4.140 14 C -0.171 4.171 15 C 0.063 3.937 16 N -0.307 5.307 17 C -0.365 4.365 18 H 0.056 0.944 19 C -0.193 4.193 20 N -0.530 5.530 21 Si 0.729 3.271 22 H -0.228 1.228 23 H -0.220 1.220 24 H -0.226 1.226 25 C -0.118 4.118 26 C -0.123 4.123 27 C -0.151 4.151 28 C -0.151 4.151 29 C -0.140 4.140 30 H 0.083 0.917 31 H 0.119 0.881 32 H 0.065 0.935 33 H 0.249 0.751 34 H 0.054 0.946 35 H 0.080 0.920 36 H 0.058 0.942 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.060 0.940 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.067 0.933 45 H 0.025 0.975 46 H 0.057 0.943 47 H 0.068 0.932 48 H 0.085 0.915 49 H 0.067 0.933 50 H 0.059 0.941 51 H 0.081 0.919 52 H 0.094 0.906 53 H 0.093 0.907 54 H 0.085 0.915 55 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.826 0.023 1.222 10.895 hybrid contribution 1.573 -0.078 -0.745 1.743 sum -9.253 -0.054 0.477 9.265 Atomic orbital electron populations 1.23192 0.79079 1.04237 1.01215 1.87988 1.21737 1.25905 1.94665 1.22079 0.95929 0.86893 0.91714 0.87718 1.21401 0.81193 0.83065 0.86431 1.90602 1.55450 1.41003 1.60116 1.45893 1.57284 1.07574 1.22847 1.21449 0.95567 0.97796 0.84620 1.20720 0.94395 0.89755 0.88341 0.92244 1.21374 1.00142 0.97459 0.97901 1.20253 1.00866 0.94485 0.97991 1.20893 0.98430 0.98206 0.96520 1.21939 0.98754 0.98963 0.97486 1.20846 0.98688 0.81688 0.92475 1.43741 1.47891 1.07395 1.31628 1.18794 1.17265 1.07616 0.92868 0.94351 1.24636 0.98286 1.00424 0.95941 1.70083 1.34398 1.39621 1.08914 0.86422 0.84932 0.77386 0.78359 1.22785 1.22042 1.22583 1.22092 0.97102 0.98747 0.93873 1.22167 1.00225 0.92779 0.97084 1.22302 0.97102 1.00454 0.95202 1.22354 0.96813 0.96073 0.99896 1.22085 0.99647 0.98080 0.94213 0.91653 0.88089 0.93546 0.75080 0.94597 0.92026 0.94249 0.91359 0.92352 0.91972 0.93997 0.92221 0.92290 0.92324 0.93321 0.97463 0.94290 0.93238 0.91529 0.93263 0.94098 0.91865 0.90606 0.90662 0.91500 0.90304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 10.54 113.37 1.19 1.59 16 2 O -0.39 -12.43 9.66 -130.85 -1.26 -13.69 16 3 C 0.10 3.10 1.90 29.85 0.06 3.16 16 4 H 0.11 2.81 7.60 -2.39 -0.02 2.79 16 5 C 0.49 19.81 6.68 87.65 0.59 20.39 16 6 O -0.59 -28.56 16.64 15.07 0.25 -28.30 16 7 N -0.68 -25.97 4.23 -463.05 -1.96 -27.93 16 8 C 0.13 4.94 4.55 86.38 0.39 5.33 16 9 C 0.18 6.14 2.21 46.18 0.10 6.25 16 10 H 0.06 1.94 8.07 -2.39 -0.02 1.92 16 11 C -0.13 -4.00 5.09 29.59 0.15 -3.85 16 12 C -0.10 -2.71 5.16 28.61 0.15 -2.56 16 13 C -0.10 -3.15 5.51 29.76 0.16 -2.99 16 14 C -0.13 -4.19 5.71 30.22 0.17 -4.02 16 15 C 0.19 7.47 4.70 86.49 0.41 7.88 16 16 N -0.58 -23.70 1.78 -673.15 -1.20 -24.89 16 17 C -0.23 -11.14 7.79 84.04 0.65 -10.49 16 18 H 0.04 2.03 6.53 -2.91 -0.02 2.01 16 19 C 0.01 0.25 2.83 84.87 0.24 0.49 16 20 N -0.88 -41.77 9.95 21.65 0.22 -41.55 16 21 Si 0.90 43.09 29.10 68.60 2.00 45.09 16 22 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 23 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 24 H -0.30 -15.17 7.11 99.48 0.71 -14.46 16 25 C -0.10 -3.29 2.73 -10.07 -0.03 -3.32 16 26 C -0.08 -3.13 3.99 31.70 0.13 -3.01 16 27 C -0.11 -3.75 6.91 31.91 0.22 -3.53 16 28 C -0.11 -2.85 6.83 31.67 0.22 -2.63 16 29 C -0.10 -2.63 6.27 31.32 0.20 -2.43 16 30 H 0.06 1.08 6.98 -2.39 -0.02 1.07 16 31 H 0.10 1.81 8.14 -2.38 -0.02 1.79 16 32 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.41 15.45 5.94 -92.71 -0.55 14.90 16 34 H 0.04 1.59 6.73 -2.39 -0.02 1.58 16 35 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 37 H 0.07 1.86 8.11 -2.39 -0.02 1.84 16 38 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 39 H 0.06 1.55 7.35 -2.39 -0.02 1.53 16 40 H 0.04 1.57 7.48 -2.39 -0.02 1.55 16 41 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.06 1.68 7.31 -2.39 -0.02 1.67 16 44 H 0.05 2.26 6.14 -2.39 -0.01 2.25 16 45 H 0.01 0.31 8.08 -2.38 -0.02 0.29 16 46 H 0.25 11.84 8.31 -92.71 -0.77 11.07 16 47 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 48 H 0.07 2.52 5.89 -2.39 -0.01 2.51 16 49 H 0.05 2.23 5.60 -2.39 -0.01 2.21 16 50 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 51 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 52 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 53 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 54 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 55 H 0.08 1.70 6.22 -2.39 -0.01 1.68 16 Total: -1.00 -58.02 400.28 3.35 -54.67 By element: Atomic # 1 Polarization: 30.05 SS G_CDS: 0.31 Total: 30.36 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: 5.00 Total: 6.27 kcal Atomic # 7 Polarization: -91.43 SS G_CDS: -2.94 Total: -94.38 kcal Atomic # 8 Polarization: -40.99 SS G_CDS: -1.01 Total: -42.00 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.00 Total: 45.09 kcal Total: -58.02 3.35 -54.67 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675270324.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.691 kcal (2) G-P(sol) polarization free energy of solvation -58.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds