Wall clock time and date at job start Tue Mar 31 2020 21:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42901 * 109.47155 * 2 1 4 4 C 1.42903 * 114.00310 * 185.15497 * 3 2 1 5 5 H 1.09005 * 109.46937 * 12.68694 * 4 3 2 6 6 C 1.52995 * 109.47301 * 132.69327 * 4 3 2 7 7 C 1.50703 * 109.47140 * 294.99905 * 6 4 3 8 8 O 1.21289 * 119.99655 * 0.02562 * 7 6 4 9 9 N 1.34766 * 120.00480 * 180.02562 * 7 6 4 10 10 C 1.47679 * 134.45906 * 180.02562 * 9 7 6 11 11 C 1.53446 * 85.97281 * 155.70903 * 10 9 7 12 12 C 1.47677 * 134.45343 * 359.97438 * 9 7 6 13 13 C 1.52639 * 113.71225 * 268.85009 * 11 10 9 14 14 C 1.53185 * 109.35020 * 171.27618 * 13 11 10 15 15 C 1.52667 * 109.42956 * 58.93353 * 14 13 11 16 16 N 1.46908 * 109.34401 * 303.76631 * 15 14 13 17 17 C 1.36936 * 120.68798 * 235.31284 * 16 15 14 18 18 H 1.07995 * 119.99581 * 152.49919 * 17 16 15 19 19 C 1.38812 * 120.00239 * 332.49882 * 17 16 15 20 20 N 1.31625 * 119.99573 * 332.30832 * 19 17 16 21 21 Si 1.86801 * 120.00105 * 152.30801 * 19 17 16 22 22 H 1.48502 * 109.46861 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.46725 * 119.99783 * 21 19 17 24 24 H 1.48494 * 109.46876 * 239.99896 * 21 19 17 25 25 C 1.47114 * 118.61761 * 55.03627 * 16 15 14 26 26 C 1.52999 * 109.46939 * 252.69227 * 4 3 2 27 27 C 1.53003 * 109.47181 * 55.02473 * 26 4 3 28 28 C 1.53000 * 109.47253 * 175.02236 * 26 4 3 29 29 H 1.08997 * 109.47139 * 60.00128 * 1 2 3 30 30 H 1.08998 * 109.47033 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47472 * 299.99917 * 1 2 3 32 32 H 1.08998 * 109.47472 * 240.00083 * 2 1 3 33 33 H 1.08997 * 109.47139 * 119.99872 * 2 1 3 34 34 H 1.09001 * 109.47012 * 175.00236 * 6 4 3 35 35 H 1.08994 * 109.47393 * 55.00147 * 6 4 3 36 36 H 1.08996 * 113.79303 * 41.44321 * 10 9 7 37 37 H 1.09001 * 113.78820 * 269.97135 * 10 9 7 38 38 H 1.09002 * 113.79359 * 90.02143 * 12 9 7 39 39 H 1.09004 * 113.79210 * 318.55616 * 12 9 7 40 40 H 1.09005 * 109.49020 * 291.24128 * 13 11 10 41 41 H 1.08998 * 109.48888 * 51.31675 * 13 11 10 42 42 H 1.08997 * 109.48809 * 179.02662 * 14 13 11 43 43 H 1.08998 * 109.49067 * 299.09863 * 14 13 11 44 44 H 1.08998 * 109.44449 * 183.78738 * 15 14 13 45 45 H 1.08994 * 109.37272 * 63.70087 * 15 14 13 46 46 H 0.96998 * 120.00506 * 354.48822 * 20 19 17 47 47 H 1.09000 * 109.63574 * 68.58345 * 25 16 15 48 48 H 1.09001 * 109.63753 * 188.98691 * 25 16 15 49 49 H 1.08994 * 109.47348 * 295.02363 * 26 4 3 50 50 H 1.08994 * 109.47221 * 54.22331 * 27 26 4 51 51 H 1.09000 * 109.47206 * 174.22740 * 27 26 4 52 52 H 1.08997 * 109.47139 * 294.22121 * 27 26 4 53 53 H 1.09001 * 109.46857 * 59.99757 * 28 26 4 54 54 H 1.08995 * 109.47733 * 179.97438 * 28 26 4 55 55 H 1.09003 * 109.47112 * 300.00434 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4259 1.4619 -0.1173 5 1 3.8453 0.4989 -0.4086 6 6 3.7670 2.5091 -1.1793 7 6 3.2930 2.0303 -2.5273 8 8 2.7366 0.9573 -2.6285 9 7 3.4872 2.7943 -3.6204 10 6 3.1653 2.6491 -5.0544 11 6 3.2130 4.1818 -5.1093 12 6 4.1064 4.1126 -3.8640 13 6 1.8625 4.8473 -4.8579 14 6 2.0602 6.3600 -4.7187 15 6 2.6953 6.9087 -5.9939 16 7 3.9532 6.1966 -6.2564 17 6 5.1271 6.8848 -6.4097 18 1 6.0662 6.4124 -6.1626 19 6 5.1099 8.1897 -6.8828 20 7 4.1358 8.5908 -7.6720 21 14 6.4691 9.3765 -6.3996 22 1 7.4372 8.6848 -5.5109 23 1 7.1688 9.8512 -7.6203 24 1 5.8815 10.5367 -5.6829 25 6 3.9265 4.7283 -6.3448 26 6 4.0159 1.8892 1.2282 27 6 3.5712 0.9080 2.3147 28 6 5.5432 1.8919 1.1375 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 4.8460 2.6609 -1.2065 35 1 3.2738 3.4496 -0.9338 36 1 2.1757 2.2329 -5.2429 37 1 3.9503 2.1637 -5.6342 38 1 5.1718 4.0632 -4.0893 39 1 3.8643 4.8588 -3.1072 40 1 1.1950 4.6433 -5.6952 41 1 1.4272 4.4515 -3.9404 42 1 1.0949 6.8394 -4.5563 43 1 2.7154 6.5647 -3.8720 44 1 2.8979 7.9724 -5.8698 45 1 2.0121 6.7617 -6.8303 46 1 3.4744 7.9553 -7.9876 47 1 3.3882 4.4252 -7.2428 48 1 4.9462 4.3450 -6.3822 49 1 3.6649 2.8906 1.4772 50 1 3.8322 -0.1073 2.0163 51 1 4.0725 1.1516 3.2515 52 1 2.4922 0.9808 2.4505 53 1 5.8599 2.5909 0.3634 54 1 5.9636 2.1967 2.0958 55 1 5.8941 0.8904 0.8884 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675659927.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:31 Heat of formation + Delta-G solvation = -64.043937 kcal Electronic energy + Delta-G solvation = -31382.204065 eV Core-core repulsion = 27419.609226 eV Total energy + Delta-G solvation = -3962.594839 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.89490 -40.36427 -38.94073 -37.57923 -36.08863 -34.55391 -32.70760 -32.34816 -31.72449 -30.62705 -27.94251 -27.33225 -27.27010 -27.03425 -24.66819 -24.00414 -23.64301 -22.33452 -21.03824 -20.27400 -19.29036 -19.19568 -18.02524 -17.99176 -16.99390 -16.90214 -16.66645 -16.24789 -15.89639 -15.48499 -15.37401 -15.24005 -15.17627 -14.92049 -14.63242 -14.54269 -14.01086 -13.94016 -13.91301 -13.50747 -13.32252 -13.26208 -13.05742 -12.94635 -12.93136 -12.86170 -12.69706 -12.58282 -12.46437 -12.11476 -11.99374 -11.93942 -11.85141 -11.78383 -11.67876 -11.64033 -11.52150 -11.33941 -11.05969 -10.76278 -10.36086 -10.30575 -9.69708 -8.85931 -8.19839 -5.31366 1.63288 1.63665 1.69943 1.81810 1.85685 2.69402 2.76417 3.17131 3.29440 3.42095 3.68178 3.73088 3.77588 3.92057 4.00988 4.05787 4.19286 4.21225 4.24912 4.27296 4.34535 4.40463 4.44682 4.46407 4.50126 4.54357 4.56782 4.60008 4.68047 4.71058 4.77025 4.80016 4.84248 4.88369 4.90075 4.93569 4.99269 5.01067 5.03349 5.04458 5.08788 5.20525 5.21219 5.25011 5.25937 5.35810 5.40414 5.42422 5.50332 5.92143 6.36508 6.44637 6.71897 7.10371 7.14580 7.83700 8.29492 9.06013 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015855 B = 0.002723 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.593492 B =10279.884195 C =11213.900848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.061 3.939 3 O -0.391 6.391 4 C 0.113 3.887 5 H 0.058 0.942 6 C -0.139 4.139 7 C 0.532 3.468 8 O -0.578 6.578 9 N -0.641 5.641 10 C 0.118 3.882 11 C -0.098 4.098 12 C 0.129 3.871 13 C -0.075 4.075 14 C -0.123 4.123 15 C 0.155 3.845 16 N -0.610 5.610 17 C -0.346 4.346 18 H 0.056 0.944 19 C -0.075 4.075 20 N -0.943 5.943 21 Si 1.112 2.888 22 H -0.269 1.269 23 H -0.297 1.297 24 H -0.291 1.291 25 C 0.165 3.835 26 C -0.107 4.107 27 C -0.143 4.143 28 C -0.148 4.148 29 H 0.042 0.958 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.037 0.963 33 H 0.058 0.942 34 H 0.124 0.876 35 H 0.103 0.897 36 H 0.076 0.924 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.070 0.930 43 H 0.058 0.942 44 H 0.044 0.956 45 H 0.000 1.000 46 H 0.254 0.746 47 H 0.016 0.984 48 H 0.060 0.940 49 H 0.077 0.923 50 H 0.051 0.949 51 H 0.068 0.932 52 H 0.052 0.948 53 H 0.062 0.938 54 H 0.071 0.929 55 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.196 -15.285 18.459 23.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.015 4.015 3 O -0.311 6.311 4 C 0.055 3.945 5 H 0.076 0.924 6 C -0.179 4.179 7 C 0.323 3.677 8 O -0.459 6.459 9 N -0.376 5.376 10 C -0.004 4.004 11 C -0.100 4.100 12 C 0.007 3.993 13 C -0.112 4.112 14 C -0.162 4.162 15 C 0.029 3.971 16 N -0.334 5.334 17 C -0.476 4.476 18 H 0.073 0.927 19 C -0.272 4.272 20 N -0.585 5.585 21 Si 0.937 3.063 22 H -0.194 1.194 23 H -0.225 1.225 24 H -0.218 1.218 25 C 0.039 3.961 26 C -0.126 4.126 27 C -0.200 4.200 28 C -0.206 4.206 29 H 0.062 0.938 30 H 0.104 0.896 31 H 0.084 0.916 32 H 0.056 0.944 33 H 0.076 0.924 34 H 0.141 0.859 35 H 0.122 0.878 36 H 0.095 0.905 37 H 0.112 0.888 38 H 0.109 0.891 39 H 0.103 0.897 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.077 0.923 44 H 0.062 0.938 45 H 0.018 0.982 46 H 0.063 0.937 47 H 0.034 0.966 48 H 0.079 0.921 49 H 0.095 0.905 50 H 0.070 0.930 51 H 0.087 0.913 52 H 0.071 0.929 53 H 0.081 0.919 54 H 0.090 0.910 55 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.091 -14.263 18.488 23.375 hybrid contribution -0.533 -1.585 -0.683 1.806 sum -1.624 -15.848 17.805 23.892 Atomic orbital electron populations 1.21708 0.93572 1.02880 1.02082 1.22550 0.95765 0.83448 0.99733 1.87814 1.21573 1.27418 1.94296 1.21892 0.81674 0.97373 0.93589 0.92403 1.22035 1.04218 1.01506 0.90109 1.20765 0.78150 0.82954 0.85788 1.90628 1.45008 1.23520 1.86713 1.50178 1.58846 1.21385 1.07169 1.23172 1.01682 0.95167 0.80428 1.22393 0.96931 0.94110 0.96601 1.23168 0.97860 0.82397 0.95858 1.21030 0.94414 0.94623 1.01165 1.21821 1.00165 0.95768 0.98416 1.20679 0.86494 0.96055 0.93832 1.44307 1.04763 1.01273 1.83073 1.20188 0.86682 0.99358 1.41347 0.92662 1.27012 1.04457 1.00308 0.95415 1.70846 1.18192 1.39053 1.30455 0.82908 0.73260 0.74299 0.75792 1.19412 1.22456 1.21754 1.20842 0.97978 0.83792 0.93504 1.21501 0.96453 1.00761 0.93857 1.21784 1.01361 0.98538 0.98293 1.21900 0.93432 1.02276 1.02953 0.93839 0.89638 0.91612 0.94426 0.92403 0.85855 0.87827 0.90531 0.88759 0.89087 0.89693 0.92076 0.91855 0.91181 0.92292 0.93777 0.98155 0.93657 0.96645 0.92141 0.90459 0.92958 0.91294 0.92889 0.91938 0.91044 0.92501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 10.28 71.98 0.74 -2.10 16 2 C 0.06 1.37 5.76 71.98 0.41 1.78 16 3 O -0.39 -9.83 8.72 -135.18 -1.18 -11.01 16 4 C 0.11 2.39 1.39 30.59 0.04 2.43 16 5 H 0.06 1.32 7.40 -2.38 -0.02 1.31 16 6 C -0.14 -2.99 5.02 29.85 0.15 -2.84 16 7 C 0.53 15.15 7.94 87.66 0.70 15.85 16 8 O -0.58 -20.01 14.85 10.74 0.16 -19.85 16 9 N -0.64 -17.48 3.45 -843.24 -2.91 -20.39 16 10 C 0.12 3.20 7.97 86.30 0.69 3.89 16 11 C -0.10 -2.93 0.87 -52.05 -0.05 -2.98 16 12 C 0.13 3.48 7.59 86.29 0.65 4.14 16 13 C -0.07 -2.26 5.02 30.54 0.15 -2.11 16 14 C -0.12 -4.21 5.99 30.55 0.18 -4.02 16 15 C 0.16 6.91 4.69 86.19 0.40 7.32 16 16 N -0.61 -28.15 2.86 -700.46 -2.00 -30.16 16 17 C -0.35 -18.04 9.47 84.03 0.80 -17.24 16 18 H 0.06 2.85 7.96 -2.91 -0.02 2.83 16 19 C -0.08 -4.10 4.61 84.86 0.39 -3.71 16 20 N -0.94 -55.97 12.42 21.65 0.27 -55.70 16 21 Si 1.11 49.07 30.00 68.60 2.06 51.13 16 22 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 23 H -0.30 -13.16 7.11 99.48 0.71 -12.45 16 24 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 25 C 0.16 6.14 5.70 86.19 0.49 6.63 16 26 C -0.11 -1.70 2.70 -10.79 -0.03 -1.73 16 27 C -0.14 -2.05 7.93 71.98 0.57 -1.48 16 28 C -0.15 -1.89 8.95 71.98 0.64 -1.25 16 29 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.08 1.29 8.14 -2.39 -0.02 1.28 16 31 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.04 0.99 6.98 -2.39 -0.02 0.98 16 33 H 0.06 1.06 6.74 -2.39 -0.02 1.04 16 34 H 0.12 2.10 6.34 -2.39 -0.02 2.09 16 35 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.08 2.09 8.09 -2.39 -0.02 2.07 16 37 H 0.09 2.34 8.09 -2.39 -0.02 2.32 16 38 H 0.09 2.41 7.98 -2.39 -0.02 2.39 16 39 H 0.08 2.23 7.36 -2.38 -0.02 2.21 16 40 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 41 H 0.06 1.82 8.02 -2.39 -0.02 1.80 16 42 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 43 H 0.06 2.02 7.36 -2.39 -0.02 2.00 16 44 H 0.04 2.27 6.27 -2.39 -0.01 2.25 16 45 H 0.00 0.02 7.99 -2.39 -0.02 0.00 16 46 H 0.25 15.40 7.00 -92.71 -0.65 14.75 16 47 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 48 H 0.06 2.21 7.79 -2.39 -0.02 2.19 16 49 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 50 H 0.05 0.73 7.92 -2.39 -0.02 0.71 16 51 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 52 H 0.05 0.85 7.32 -2.39 -0.02 0.84 16 53 H 0.06 0.76 6.46 -2.39 -0.02 0.75 16 54 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 55 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -66.17 418.15 4.29 -61.87 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: 0.95 Total: 21.52 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: 6.95 Total: 2.59 kcal Atomic # 7 Polarization: -101.60 SS G_CDS: -4.64 Total: -106.25 kcal Atomic # 8 Polarization: -29.84 SS G_CDS: -1.02 Total: -30.86 kcal Atomic # 14 Polarization: 49.07 SS G_CDS: 2.06 Total: 51.13 kcal Total: -66.17 4.29 -61.87 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675659927.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.173 kcal (2) G-P(sol) polarization free energy of solvation -66.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds