Wall clock time and date at job start Tue Mar 31 2020 22:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.36933 * 120.00199 * 2 1 4 4 H 1.08004 * 120.00061 * 33.74662 * 3 2 1 5 5 C 1.38813 * 120.00144 * 213.74212 * 3 2 1 6 6 N 1.31615 * 120.00130 * 27.70899 * 5 3 2 7 7 Si 1.86805 * 120.00116 * 207.43574 * 5 3 2 8 8 H 1.48503 * 109.46978 * 359.97438 * 7 5 3 9 9 H 1.48499 * 109.47324 * 119.99620 * 7 5 3 10 10 H 1.48498 * 109.47298 * 240.00197 * 7 5 3 11 11 C 1.46508 * 120.00018 * 179.97438 * 2 1 3 12 12 C 1.52997 * 109.47163 * 270.00174 * 11 2 1 13 13 H 1.09000 * 109.46826 * 60.00139 * 12 11 2 14 14 O 1.42891 * 109.47198 * 299.99749 * 12 11 2 15 15 C 1.53000 * 109.46941 * 179.97438 * 12 11 2 16 16 N 1.46494 * 109.47273 * 184.99820 * 15 12 11 17 17 C 1.46507 * 120.00006 * 90.00319 * 16 15 12 18 18 C 1.34773 * 120.00416 * 270.00542 * 16 15 12 19 19 O 1.21277 * 119.99884 * 359.97438 * 18 16 15 20 20 C 1.50541 * 120.00264 * 179.97438 * 18 16 15 21 21 H 1.08761 * 116.25341 * 31.79126 * 20 18 16 22 22 C 1.53532 * 117.73356 * 179.97438 * 20 18 16 23 23 H 1.12398 * 112.93791 * 356.77586 * 22 20 18 24 24 C 1.52977 * 116.18281 * 226.81798 * 22 20 18 25 25 C 1.54761 * 107.63225 * 206.50273 * 24 22 20 26 26 C 1.53911 * 108.07864 * 109.22287 * 25 24 22 27 27 C 1.51342 * 118.03809 * 294.72527 * 26 25 24 28 28 C 1.53624 * 112.52797 * 61.56638 * 27 26 25 29 29 C 1.54165 * 106.38253 * 246.29729 * 28 27 26 30 30 C 1.48786 * 60.96379 * 106.41919 * 22 20 18 31 31 H 1.12962 * 117.42547 * 257.78274 * 30 22 20 32 32 H 1.09006 * 109.47391 * 86.30756 * 1 2 3 33 33 H 1.09000 * 109.47169 * 206.31031 * 1 2 3 34 34 H 1.09007 * 109.47225 * 326.31091 * 1 2 3 35 35 H 0.97003 * 120.00013 * 5.42843 * 6 5 3 36 36 H 1.08999 * 109.46915 * 30.00300 * 11 2 1 37 37 H 1.08997 * 109.46739 * 149.99862 * 11 2 1 38 38 H 0.96702 * 114.00667 * 299.99845 * 14 12 11 39 39 H 1.09003 * 109.47127 * 305.00411 * 15 12 11 40 40 H 1.08999 * 109.47062 * 64.99991 * 15 12 11 41 41 H 1.08991 * 109.47118 * 89.99313 * 17 16 15 42 42 H 1.08994 * 109.47551 * 210.00666 * 17 16 15 43 43 H 1.09005 * 109.46725 * 330.00043 * 17 16 15 44 44 H 1.06726 * 114.88697 * 331.69682 * 24 22 20 45 45 H 1.10851 * 108.20621 * 92.06973 * 24 22 20 46 46 H 1.08514 * 109.21223 * 227.31623 * 25 24 22 47 47 H 1.07757 * 110.06519 * 350.33793 * 25 24 22 48 48 H 1.08662 * 107.55857 * 59.35213 * 26 25 24 49 49 H 1.10632 * 106.29271 * 173.12891 * 26 25 24 50 50 H 1.10519 * 109.31176 * 181.63000 * 27 26 25 51 51 H 1.09078 * 110.11091 * 299.04632 * 27 26 25 52 52 H 1.06875 * 114.64810 * 13.58632 * 28 27 26 53 53 H 1.11419 * 107.64103 * 131.14260 * 28 27 26 54 54 H 1.09892 * 109.08359 * 218.90748 * 29 28 27 55 55 H 1.10689 * 107.94411 * 333.11002 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 1.7461 2.0424 0.5196 5 6 3.3624 1.2871 -0.6677 6 7 3.6088 0.5157 -1.7053 7 14 4.6417 2.5235 -0.0984 8 1 4.1216 3.2687 1.0761 9 1 5.8870 1.8086 0.2802 10 1 4.9332 3.4767 -1.1992 11 6 2.1975 -1.2688 0.0006 12 6 2.4524 -1.7098 1.4432 13 1 1.5000 -1.8400 1.9570 14 8 3.2247 -0.7138 2.1164 15 6 3.2169 -3.0352 1.4438 16 7 3.3568 -3.5177 2.8199 17 6 2.3319 -4.3906 3.3978 18 6 4.4283 -3.1586 3.5543 19 8 5.2769 -2.4364 3.0757 20 6 4.5718 -3.6540 4.9686 21 1 4.1570 -4.6373 5.1783 22 6 5.8129 -3.2133 5.7575 23 1 6.5239 -2.5941 5.1456 24 6 6.5567 -4.3141 6.5159 25 6 7.2826 -3.6516 7.7114 26 6 6.5670 -4.0838 9.0037 27 6 5.1401 -3.6253 9.2142 28 6 4.1871 -4.1508 8.1300 29 6 3.7071 -2.9181 7.3383 30 6 4.4939 -2.6111 6.0910 31 1 4.2854 -1.5695 5.7067 32 1 -0.3634 0.0662 -1.0256 33 1 -0.3633 -0.9212 0.4555 34 1 -0.3634 0.8551 0.5701 35 1 2.9151 -0.0671 -2.0520 36 1 1.6084 -2.0286 -0.5130 37 1 3.1498 -1.1386 -0.5133 38 1 4.0872 -0.5454 1.7129 39 1 2.6691 -3.7708 0.8547 40 1 4.2051 -2.8848 1.0093 41 1 2.5876 -5.4315 3.2002 42 1 2.2802 -4.2271 4.4742 43 1 1.3651 -4.1624 2.9490 44 1 5.9490 -5.1344 6.8272 45 1 7.3508 -4.7147 5.8543 46 1 8.3080 -4.0047 7.7468 47 1 7.2326 -2.5786 7.6257 48 1 6.6143 -5.1680 9.0577 49 1 7.1799 -3.7001 9.8410 50 1 4.7797 -3.9901 10.1932 51 1 5.0964 -2.5358 9.2416 52 1 4.5903 -4.9326 7.5229 53 1 3.3004 -4.5889 8.6432 54 1 2.6435 -3.0418 7.0910 55 1 3.7549 -2.0407 8.0114 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677174173.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:20 Heat of formation + Delta-G solvation = -63.897780 kcal Electronic energy + Delta-G solvation = -31529.431182 eV Core-core repulsion = 27566.842680 eV Total energy + Delta-G solvation = -3962.588501 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.47377 -39.75786 -38.69524 -36.87608 -35.98743 -35.86302 -33.80479 -33.29061 -31.55248 -29.30858 -28.23096 -27.43410 -27.32265 -27.04053 -24.78002 -23.25922 -22.18178 -21.88752 -21.39647 -20.25678 -19.80382 -19.35626 -18.36608 -17.62966 -16.93997 -16.71226 -16.36773 -16.22531 -15.77908 -15.50667 -15.47934 -15.16541 -15.09247 -15.02669 -14.68807 -14.45408 -14.00402 -13.92189 -13.80102 -13.66299 -13.44929 -13.30296 -13.16766 -12.93404 -12.77809 -12.72032 -12.69619 -12.61977 -12.32671 -11.98961 -11.93604 -11.89419 -11.88797 -11.46701 -11.42810 -11.29416 -11.14756 -11.07215 -10.68958 -10.60321 -10.45299 -10.41516 -9.54832 -8.82175 -8.16289 -5.44237 1.53453 1.55379 1.61290 1.77968 2.02262 2.62088 2.85291 3.16632 3.42054 3.53084 3.67215 3.70792 3.77977 3.84120 3.98001 4.04720 4.10793 4.13651 4.18179 4.22844 4.27883 4.31940 4.40817 4.43466 4.55762 4.60476 4.61107 4.64974 4.74389 4.75989 4.79920 4.83070 4.88299 4.89997 4.94825 4.95941 5.03391 5.03958 5.08156 5.18369 5.22494 5.32720 5.33513 5.38039 5.38997 5.47762 5.54842 5.64940 5.71421 5.88889 6.40759 6.46522 6.83582 7.10268 7.29514 7.77020 8.18369 8.97722 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015325 B = 0.002937 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.698995 B = 9530.370930 C =10255.216447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.125 3.875 2 N -0.612 5.612 3 C -0.330 4.330 4 H 0.029 0.971 5 C -0.062 4.062 6 N -0.930 5.930 7 Si 1.101 2.899 8 H -0.284 1.284 9 H -0.288 1.288 10 H -0.289 1.289 11 C 0.107 3.893 12 C 0.091 3.909 13 H 0.083 0.917 14 O -0.554 6.554 15 C 0.092 3.908 16 N -0.609 5.609 17 C 0.075 3.925 18 C 0.534 3.466 19 O -0.585 6.585 20 C -0.216 4.216 21 H 0.149 0.851 22 C -0.089 4.089 23 H 0.077 0.923 24 C -0.083 4.083 25 C -0.114 4.114 26 C -0.118 4.118 27 C -0.113 4.113 28 C -0.119 4.119 29 C -0.087 4.087 30 C -0.078 4.078 31 H 0.071 0.929 32 H 0.002 0.998 33 H 0.058 0.942 34 H 0.029 0.971 35 H 0.255 0.745 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.362 0.638 39 H 0.108 0.892 40 H 0.056 0.944 41 H 0.077 0.923 42 H 0.085 0.915 43 H 0.078 0.922 44 H 0.097 0.903 45 H 0.057 0.943 46 H 0.072 0.928 47 H 0.055 0.945 48 H 0.063 0.937 49 H 0.051 0.949 50 H 0.067 0.933 51 H 0.055 0.945 52 H 0.085 0.915 53 H 0.065 0.935 54 H 0.070 0.930 55 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.231 -18.016 22.246 28.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 N -0.335 5.335 3 C -0.460 4.460 4 H 0.047 0.953 5 C -0.260 4.260 6 N -0.572 5.572 7 Si 0.927 3.073 8 H -0.209 1.209 9 H -0.215 1.215 10 H -0.216 1.216 11 C -0.020 4.020 12 C 0.029 3.971 13 H 0.101 0.899 14 O -0.358 6.358 15 C -0.032 4.032 16 N -0.340 5.340 17 C -0.067 4.067 18 C 0.324 3.676 19 O -0.465 6.465 20 C -0.237 4.237 21 H 0.166 0.834 22 C -0.107 4.107 23 H 0.095 0.905 24 C -0.120 4.120 25 C -0.152 4.152 26 C -0.155 4.155 27 C -0.150 4.150 28 C -0.156 4.156 29 C -0.124 4.124 30 C -0.097 4.097 31 H 0.089 0.911 32 H 0.020 0.980 33 H 0.076 0.924 34 H 0.047 0.953 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.208 0.792 39 H 0.127 0.873 40 H 0.075 0.925 41 H 0.095 0.905 42 H 0.104 0.896 43 H 0.096 0.904 44 H 0.115 0.885 45 H 0.076 0.924 46 H 0.090 0.910 47 H 0.073 0.927 48 H 0.082 0.918 49 H 0.070 0.930 50 H 0.086 0.914 51 H 0.074 0.926 52 H 0.104 0.896 53 H 0.084 0.916 54 H 0.089 0.911 55 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.590 -17.065 22.127 27.988 hybrid contribution -1.254 0.035 -0.916 1.553 sum 0.336 -17.030 21.211 27.204 Atomic orbital electron populations 1.21113 0.83784 0.99584 0.97442 1.43908 1.01353 1.02060 1.86215 1.19826 1.06756 0.90923 1.28526 0.95346 1.26687 1.01792 1.03721 0.93772 1.70857 1.37744 1.28361 1.20245 0.83045 0.74589 0.74379 0.75255 1.20948 1.21507 1.21610 1.21607 0.98254 0.86985 0.95126 1.22796 0.93547 0.86445 0.94360 0.89918 1.86407 1.32691 1.60576 1.56123 1.22083 1.01019 0.96638 0.83457 1.47748 1.23012 1.49860 1.13378 1.22038 0.90725 0.93824 1.00109 1.20277 0.80509 0.79060 0.87716 1.90653 1.43451 1.38967 1.73431 1.22602 1.10115 1.02413 0.88550 0.83394 1.22242 0.89665 1.00112 0.98721 0.90521 1.21577 0.98500 0.95259 0.96621 1.21829 0.98897 1.00281 0.94148 1.21466 0.95620 1.01292 0.97136 1.21631 0.94152 1.00690 0.98544 1.22003 0.99657 0.96374 0.97549 1.21343 0.98348 0.99150 0.93565 1.21583 0.97673 0.95700 0.94729 0.91090 0.97957 0.92364 0.95268 0.93480 0.92632 0.92784 0.79214 0.87349 0.92533 0.90458 0.89599 0.90370 0.88522 0.92434 0.90961 0.92657 0.91817 0.93032 0.91446 0.92601 0.89633 0.91593 0.91107 0.91299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 5.40 10.69 127.77 1.37 6.77 16 2 N -0.61 -31.41 2.61 -726.93 -1.89 -33.30 16 3 C -0.33 -19.23 8.77 84.03 0.74 -18.49 16 4 H 0.03 1.75 7.96 -2.91 -0.02 1.73 16 5 C -0.06 -3.64 4.82 84.86 0.41 -3.24 16 6 N -0.93 -56.99 12.17 21.65 0.26 -56.72 16 7 Si 1.10 54.88 30.00 68.60 2.06 56.94 16 8 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 9 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 10 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 11 C 0.11 4.90 4.54 86.38 0.39 5.29 16 12 C 0.09 3.62 3.48 30.59 0.11 3.73 16 13 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 14 O -0.55 -26.60 11.48 -141.64 -1.63 -28.23 16 15 C 0.09 3.04 5.11 86.38 0.44 3.48 16 16 N -0.61 -17.23 2.86 -846.99 -2.42 -19.65 16 17 C 0.07 1.30 10.01 127.77 1.28 2.58 16 18 C 0.53 17.36 7.03 87.61 0.62 17.97 16 19 O -0.58 -24.92 14.64 4.32 0.06 -24.86 16 20 C -0.22 -4.94 4.29 -11.27 -0.05 -4.99 16 21 H 0.15 2.41 7.16 -2.51 -0.02 2.39 16 22 C -0.09 -1.99 4.35 -11.96 -0.05 -2.04 16 23 H 0.08 2.30 7.63 -0.52 0.00 2.30 16 24 C -0.08 -1.30 4.93 31.19 0.15 -1.15 16 25 C -0.11 -1.64 6.19 31.50 0.20 -1.45 16 26 C -0.12 -1.35 5.06 30.36 0.15 -1.20 16 27 C -0.11 -1.28 5.73 30.26 0.17 -1.11 16 28 C -0.12 -1.32 5.17 31.20 0.16 -1.16 16 29 C -0.09 -1.34 5.51 30.22 0.17 -1.17 16 30 C -0.08 -1.73 5.41 -12.76 -0.07 -1.80 16 31 H 0.07 2.10 8.39 -0.20 0.00 2.10 16 32 H 0.00 0.10 8.14 -2.38 -0.02 0.08 16 33 H 0.06 2.08 8.04 -2.39 -0.02 2.06 16 34 H 0.03 1.25 8.07 -2.38 -0.02 1.23 16 35 H 0.26 15.80 7.17 -92.71 -0.67 15.13 16 36 H 0.06 2.23 8.07 -2.39 -0.02 2.21 16 37 H 0.05 2.88 5.29 -2.39 -0.01 2.87 16 38 H 0.36 18.71 8.75 -74.06 -0.65 18.06 16 39 H 0.11 2.82 8.07 -2.39 -0.02 2.80 16 40 H 0.06 2.21 7.42 -2.39 -0.02 2.19 16 41 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.09 1.25 6.60 -2.39 -0.02 1.24 16 43 H 0.08 1.25 8.07 -2.38 -0.02 1.23 16 44 H 0.10 1.17 5.12 -3.56 -0.02 1.16 16 45 H 0.06 0.95 8.28 -1.39 -0.01 0.93 16 46 H 0.07 0.92 8.10 -2.64 -0.02 0.90 16 47 H 0.05 0.97 7.50 -3.04 -0.02 0.95 16 48 H 0.06 0.62 8.09 -2.57 -0.02 0.60 16 49 H 0.05 0.57 8.26 -1.51 -0.01 0.56 16 50 H 0.07 0.62 8.27 -1.57 -0.01 0.61 16 51 H 0.06 0.74 6.84 -2.35 -0.02 0.73 16 52 H 0.09 0.89 4.79 -3.49 -0.02 0.87 16 53 H 0.07 0.58 8.34 -1.07 -0.01 0.57 16 54 H 0.07 1.01 8.22 -1.91 -0.02 1.00 16 55 H 0.07 1.08 7.06 -1.48 -0.01 1.07 16 Total: -1.00 -75.02 416.16 3.00 -72.02 By element: Atomic # 1 Polarization: 31.40 SS G_CDS: 0.37 Total: 31.77 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: 6.18 Total: 2.03 kcal Atomic # 7 Polarization: -105.63 SS G_CDS: -4.05 Total: -109.67 kcal Atomic # 8 Polarization: -51.53 SS G_CDS: -1.56 Total: -53.09 kcal Atomic # 14 Polarization: 54.88 SS G_CDS: 2.06 Total: 56.94 kcal Total: -75.02 3.00 -72.02 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677174173.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.121 kcal (2) G-P(sol) polarization free energy of solvation -75.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds