Wall clock time and date at job start Tue Mar 31 2020 22:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36945 * 119.99775 * 2 1 4 4 H 1.07998 * 120.00435 * 322.09902 * 3 2 1 5 5 C 1.38814 * 119.99576 * 142.10048 * 3 2 1 6 6 N 1.31619 * 120.00126 * 157.11538 * 5 3 2 7 7 Si 1.86803 * 120.00087 * 337.10994 * 5 3 2 8 8 H 1.48498 * 109.46857 * 95.73575 * 7 5 3 9 9 H 1.48494 * 109.47121 * 215.73627 * 7 5 3 10 10 H 1.48497 * 109.47104 * 335.73855 * 7 5 3 11 11 C 1.46498 * 120.00105 * 180.02562 * 2 1 3 12 12 C 1.52999 * 109.47240 * 89.99797 * 11 2 1 13 13 H 1.09000 * 109.47154 * 60.00105 * 12 11 2 14 14 O 1.42899 * 109.47199 * 299.99966 * 12 11 2 15 15 C 1.53004 * 109.47200 * 179.97438 * 12 11 2 16 16 N 1.46498 * 109.47131 * 184.99497 * 15 12 11 17 17 C 1.46497 * 120.00303 * 269.99900 * 16 15 12 18 18 C 1.34782 * 119.99306 * 90.00590 * 16 15 12 19 19 O 1.21272 * 120.00616 * 359.71574 * 18 16 15 20 20 C 1.50701 * 119.99518 * 180.02562 * 18 16 15 21 21 C 1.50918 * 117.30530 * 249.33086 * 20 18 16 22 22 H 1.09000 * 117.53962 * 359.13857 * 21 20 18 23 23 C 1.54607 * 123.58627 * 158.04597 * 21 20 18 24 24 C 1.54824 * 102.34648 * 124.49642 * 23 21 20 25 25 C 1.49143 * 109.53702 * 56.42745 * 24 23 21 26 26 C 1.51242 * 120.89143 * 277.98943 * 25 24 23 27 27 C 1.54383 * 111.08144 * 324.70039 * 26 25 24 28 28 C 1.51850 * 108.12397 * 101.13031 * 27 26 25 29 29 C 1.48772 * 113.61893 * 294.73528 * 28 27 26 30 30 H 1.09006 * 112.25194 * 288.28205 * 29 28 27 31 31 H 1.09008 * 109.46886 * 269.55609 * 1 2 3 32 32 H 1.08997 * 109.47442 * 29.55208 * 1 2 3 33 33 H 1.08994 * 109.47334 * 149.55627 * 1 2 3 34 34 H 0.96993 * 120.00345 * 179.97438 * 6 5 3 35 35 H 1.08992 * 109.47209 * 329.99551 * 11 2 1 36 36 H 1.09001 * 109.46800 * 209.99605 * 11 2 1 37 37 H 0.96706 * 113.99908 * 300.00225 * 14 12 11 38 38 H 1.09009 * 109.46783 * 64.99577 * 15 12 11 39 39 H 1.08997 * 109.46993 * 305.00200 * 15 12 11 40 40 H 1.09001 * 109.47393 * 270.00231 * 17 16 15 41 41 H 1.09002 * 109.47113 * 30.00651 * 17 16 15 42 42 H 1.08998 * 109.46914 * 150.00288 * 17 16 15 43 43 H 1.09000 * 115.43735 * 34.13496 * 20 18 16 44 44 H 1.08992 * 110.85925 * 242.75389 * 23 21 20 45 45 H 1.08996 * 110.85687 * 6.19485 * 23 21 20 46 46 H 1.08998 * 109.46078 * 176.44854 * 24 23 21 47 47 H 1.09001 * 109.46212 * 296.41842 * 24 23 21 48 48 H 1.08994 * 107.13245 * 40.91290 * 25 24 23 49 49 H 1.08998 * 107.13647 * 155.11390 * 25 24 23 50 50 H 1.09002 * 109.15723 * 85.11409 * 26 25 24 51 51 H 1.08997 * 109.15983 * 204.34502 * 26 25 24 52 52 H 1.08996 * 109.52257 * 220.90875 * 27 26 25 53 53 H 1.08995 * 109.51896 * 341.03300 * 27 26 25 54 54 H 1.08998 * 107.62018 * 174.11273 * 28 27 26 55 55 H 1.09000 * 108.98019 * 56.31438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 1.7805 2.0227 -0.5745 5 6 3.3182 1.3127 0.7385 6 7 4.2039 2.2314 0.4164 7 14 3.6336 0.1795 2.1896 8 1 4.4727 -0.9645 1.7510 9 1 4.3393 0.9297 3.2593 10 1 2.3393 -0.3277 2.7120 11 6 2.1975 -1.2687 -0.0006 12 6 2.4524 -1.7098 -1.4432 13 1 3.0415 -0.9499 -1.9568 14 8 1.2038 -1.8804 -2.1169 15 6 3.2180 -3.0345 -1.4438 16 7 3.5663 -3.3966 -2.8200 17 6 2.6462 -4.2101 -3.6186 18 6 4.7334 -2.9814 -3.3511 19 8 5.4928 -2.3038 -2.6918 20 6 5.0914 -3.3534 -4.7669 21 6 6.2244 -4.3314 -4.9603 22 1 6.7284 -4.7018 -4.0676 23 6 6.4102 -5.1836 -6.2369 24 6 7.8485 -4.8144 -6.6751 25 6 8.7974 -5.0951 -5.5592 26 6 8.9836 -4.1054 -4.4308 27 6 8.8781 -2.6529 -4.9430 28 6 7.4951 -2.1295 -4.5976 29 6 6.3955 -2.8383 -5.3060 30 1 6.3610 -2.5907 -6.3670 31 1 -0.3633 -0.0080 1.0277 32 1 -0.3634 0.8939 -0.5068 33 1 -0.3634 -0.8859 -0.5207 34 1 5.0203 2.3203 0.9326 35 1 1.6085 -2.0285 0.5130 36 1 3.1499 -1.1385 0.5133 37 1 0.6267 -2.5433 -1.7136 38 1 2.5934 -3.8153 -1.0096 39 1 4.1287 -2.9280 -0.8545 40 1 2.8770 -5.2658 -3.4758 41 1 1.6214 -4.0161 -3.3019 42 1 2.7556 -3.9536 -4.6723 43 1 4.2532 -3.4158 -5.4609 44 1 6.3350 -6.2466 -6.0082 45 1 5.6863 -4.9007 -7.0011 46 1 8.1264 -5.4079 -7.5460 47 1 7.8901 -3.7552 -6.9291 48 1 8.4940 -6.0407 -5.1100 49 1 9.7780 -5.2603 -6.0054 50 1 8.2159 -4.2752 -3.6758 51 1 9.9656 -4.2551 -3.9821 52 1 9.6387 -2.0400 -4.4595 53 1 9.0283 -2.6356 -6.0224 54 1 7.4651 -1.0737 -4.8668 55 1 7.3392 -2.2221 -3.5228 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677174181.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:55 Heat of formation + Delta-G solvation = -53.523760 kcal Electronic energy + Delta-G solvation = -31736.943066 eV Core-core repulsion = 27774.804416 eV Total energy + Delta-G solvation = -3962.138650 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.91734 -40.14995 -38.91299 -36.91796 -35.97247 -35.77838 -34.13448 -33.72602 -31.79338 -29.55389 -28.35888 -27.80733 -27.11909 -26.86087 -24.72707 -23.38458 -22.69607 -22.20849 -21.49793 -20.43204 -19.74562 -19.00323 -18.09736 -17.56272 -17.28690 -16.93011 -16.64157 -16.36091 -16.05907 -15.71979 -15.50502 -15.36048 -15.07435 -15.03431 -14.64317 -14.43543 -14.37564 -14.26599 -13.90017 -13.83993 -13.56454 -13.35434 -13.16811 -13.15297 -12.79010 -12.68003 -12.59012 -12.40865 -12.30796 -12.15738 -12.10439 -12.06146 -11.97940 -11.68377 -11.63606 -11.34868 -11.31801 -11.14240 -10.73417 -10.68590 -10.50709 -10.17660 -9.58421 -8.70033 -8.26271 -5.62861 1.24050 1.33043 1.45827 1.47041 2.01068 2.36569 2.72588 2.95218 3.38652 3.46947 3.56422 3.61489 3.80728 3.94024 3.96764 4.01084 4.04472 4.09240 4.18554 4.19622 4.30594 4.33274 4.37669 4.48055 4.57247 4.60391 4.62855 4.65371 4.70703 4.80585 4.82426 4.89610 4.94051 5.01086 5.02314 5.04253 5.06777 5.13007 5.13385 5.18950 5.20082 5.22648 5.26839 5.40298 5.44348 5.51274 5.58900 5.61096 5.67954 5.88353 6.10233 6.41417 6.92999 7.00744 7.22954 7.59707 7.99888 8.94050 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014755 B = 0.003210 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.150572 B = 8721.816126 C = 9856.072545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.130 3.870 2 N -0.617 5.617 3 C -0.264 4.264 4 H 0.031 0.969 5 C -0.025 4.025 6 N -0.949 5.949 7 Si 0.948 3.052 8 H -0.278 1.278 9 H -0.305 1.305 10 H -0.248 1.248 11 C 0.106 3.894 12 C 0.099 3.901 13 H 0.040 0.960 14 O -0.552 6.552 15 C 0.090 3.910 16 N -0.604 5.604 17 C 0.078 3.922 18 C 0.521 3.479 19 O -0.582 6.582 20 C -0.152 4.152 21 C -0.118 4.118 22 H 0.100 0.900 23 C -0.076 4.076 24 C -0.117 4.117 25 C -0.113 4.113 26 C -0.118 4.118 27 C -0.105 4.105 28 C -0.097 4.097 29 C -0.138 4.138 30 H 0.113 0.887 31 H 0.015 0.985 32 H 0.026 0.974 33 H 0.072 0.928 34 H 0.262 0.738 35 H 0.088 0.912 36 H 0.032 0.968 37 H 0.381 0.619 38 H 0.123 0.877 39 H 0.058 0.942 40 H 0.076 0.924 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.150 0.850 44 H 0.083 0.917 45 H 0.084 0.916 46 H 0.080 0.920 47 H 0.066 0.934 48 H 0.055 0.945 49 H 0.056 0.944 50 H 0.047 0.953 51 H 0.061 0.939 52 H 0.056 0.944 53 H 0.080 0.920 54 H 0.034 0.966 55 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.793 -24.816 -15.107 29.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.014 4.014 2 N -0.341 5.341 3 C -0.395 4.395 4 H 0.049 0.951 5 C -0.221 4.221 6 N -0.593 5.593 7 Si 0.775 3.225 8 H -0.205 1.205 9 H -0.234 1.234 10 H -0.172 1.172 11 C -0.020 4.020 12 C 0.036 3.964 13 H 0.058 0.942 14 O -0.359 6.359 15 C -0.034 4.034 16 N -0.335 5.335 17 C -0.063 4.063 18 C 0.310 3.690 19 O -0.463 6.463 20 C -0.173 4.173 21 C -0.136 4.136 22 H 0.118 0.882 23 C -0.113 4.113 24 C -0.154 4.154 25 C -0.151 4.151 26 C -0.156 4.156 27 C -0.143 4.143 28 C -0.135 4.135 29 C -0.157 4.157 30 H 0.131 0.869 31 H 0.033 0.967 32 H 0.045 0.955 33 H 0.091 0.909 34 H 0.071 0.929 35 H 0.106 0.894 36 H 0.050 0.950 37 H 0.229 0.771 38 H 0.141 0.859 39 H 0.077 0.923 40 H 0.095 0.905 41 H 0.106 0.894 42 H 0.099 0.901 43 H 0.167 0.833 44 H 0.102 0.898 45 H 0.103 0.897 46 H 0.099 0.901 47 H 0.085 0.915 48 H 0.074 0.926 49 H 0.075 0.925 50 H 0.065 0.935 51 H 0.080 0.920 52 H 0.075 0.925 53 H 0.098 0.902 54 H 0.053 0.947 55 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.531 -23.947 -15.109 28.428 hybrid contribution 0.413 0.524 1.504 1.646 sum 2.944 -23.423 -13.604 27.247 Atomic orbital electron populations 1.21166 0.81707 1.00496 0.98036 1.43977 1.02503 1.00900 1.86730 1.18654 1.06338 0.91682 1.22780 0.95135 1.26173 0.96631 0.98767 1.00534 1.70029 1.09214 1.39233 1.40836 0.85778 0.78503 0.78158 0.80022 1.20531 1.23368 1.17160 1.21897 0.96307 0.88520 0.95255 1.22472 0.84767 0.94986 0.94166 0.94196 1.86616 1.28746 1.64290 1.56199 1.22134 1.00333 0.97336 0.83638 1.47854 1.19170 1.52466 1.14035 1.22085 0.93656 0.94628 0.95977 1.20608 0.80949 0.78623 0.88780 1.90690 1.51801 1.40112 1.63652 1.21811 0.95751 1.06175 0.93542 1.23025 0.97527 0.92093 1.00996 0.88198 1.22048 0.97121 0.98954 0.93170 1.21304 0.94015 1.02498 0.97590 1.20317 1.00069 0.98664 0.96047 1.21658 1.00938 0.94736 0.98236 1.21535 0.94684 0.96195 1.01848 1.20078 0.94198 0.98277 1.00930 1.20978 0.95140 0.98960 1.00586 0.86870 0.96707 0.95474 0.90911 0.92949 0.89390 0.95004 0.77085 0.85914 0.92324 0.90521 0.89448 0.90050 0.83289 0.89796 0.89717 0.90107 0.91549 0.92647 0.92547 0.93479 0.92033 0.92523 0.90158 0.94692 0.92938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 5.10 10.44 127.77 1.33 6.43 16 2 N -0.62 -30.17 2.39 -726.96 -1.74 -31.91 16 3 C -0.26 -16.14 9.90 84.03 0.83 -15.31 16 4 H 0.03 2.10 8.06 -2.91 -0.02 2.07 16 5 C -0.02 -1.54 5.29 84.86 0.45 -1.09 16 6 N -0.95 -63.92 13.97 21.65 0.30 -63.62 16 7 Si 0.95 48.75 25.09 68.60 1.72 50.47 16 8 H -0.28 -13.87 6.68 99.48 0.66 -13.21 16 9 H -0.31 -15.81 7.11 99.48 0.71 -15.10 16 10 H -0.25 -11.72 7.11 99.48 0.71 -11.02 16 11 C 0.11 4.43 4.21 86.38 0.36 4.80 16 12 C 0.10 3.77 3.48 30.60 0.11 3.87 16 13 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 14 O -0.55 -17.19 10.88 -148.98 -1.62 -18.81 16 15 C 0.09 2.71 5.06 86.38 0.44 3.15 16 16 N -0.60 -16.47 2.84 -846.76 -2.40 -18.87 16 17 C 0.08 1.25 10.08 127.77 1.29 2.54 16 18 C 0.52 17.11 7.43 87.66 0.65 17.76 16 19 O -0.58 -25.72 13.59 -3.00 -0.04 -25.76 16 20 C -0.15 -3.53 5.02 -13.11 -0.07 -3.60 16 21 C -0.12 -2.21 4.15 -10.51 -0.04 -2.25 16 22 H 0.10 2.26 5.48 -2.39 -0.01 2.25 16 23 C -0.08 -0.87 6.19 31.76 0.20 -0.67 16 24 C -0.12 -1.39 5.43 29.99 0.16 -1.23 16 25 C -0.11 -1.62 4.44 28.79 0.13 -1.49 16 26 C -0.12 -2.32 5.37 30.49 0.16 -2.15 16 27 C -0.11 -2.30 5.68 30.69 0.17 -2.13 16 28 C -0.10 -2.79 4.82 28.88 0.14 -2.65 16 29 C -0.14 -3.24 3.76 -12.62 -0.05 -3.28 16 30 H 0.11 2.21 7.24 -2.38 -0.02 2.19 16 31 H 0.01 0.55 8.14 -2.38 -0.02 0.53 16 32 H 0.03 1.11 8.04 -2.39 -0.02 1.09 16 33 H 0.07 2.24 6.87 -2.39 -0.02 2.22 16 34 H 0.26 16.72 8.31 -92.71 -0.77 15.95 16 35 H 0.09 2.83 8.07 -2.39 -0.02 2.81 16 36 H 0.03 1.54 3.37 -2.39 -0.01 1.53 16 37 H 0.38 7.56 8.79 -74.05 -0.65 6.91 16 38 H 0.12 2.48 8.07 -2.38 -0.02 2.47 16 39 H 0.06 2.16 7.43 -2.39 -0.02 2.14 16 40 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.09 1.22 7.11 -2.39 -0.02 1.21 16 42 H 0.08 1.12 5.99 -2.39 -0.01 1.11 16 43 H 0.15 2.58 6.42 -2.39 -0.02 2.57 16 44 H 0.08 0.77 8.13 -2.39 -0.02 0.75 16 45 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 47 H 0.07 0.91 4.58 -2.39 -0.01 0.90 16 48 H 0.05 0.75 7.84 -2.39 -0.02 0.73 16 49 H 0.06 0.71 8.12 -2.39 -0.02 0.69 16 50 H 0.05 1.12 5.13 -2.39 -0.01 1.10 16 51 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 52 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 53 H 0.08 1.46 6.33 -2.39 -0.02 1.45 16 54 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 55 H 0.05 1.93 5.52 -2.39 -0.01 1.92 16 Total: -1.00 -85.45 400.44 2.68 -82.77 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: 0.19 Total: 23.03 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: 6.27 Total: 2.69 kcal Atomic # 7 Polarization: -110.56 SS G_CDS: -3.84 Total: -114.40 kcal Atomic # 8 Polarization: -42.91 SS G_CDS: -1.66 Total: -44.57 kcal Atomic # 14 Polarization: 48.75 SS G_CDS: 1.72 Total: 50.47 kcal Total: -85.45 2.68 -82.77 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677174181.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.246 kcal (2) G-P(sol) polarization free energy of solvation -85.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds