Wall clock time and date at job start Tue Mar 31 2020 22:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36938 * 120.00429 * 2 1 4 4 H 1.07995 * 120.00195 * 202.92659 * 3 2 1 5 5 C 1.38815 * 119.99786 * 22.92219 * 3 2 1 6 6 N 1.31619 * 119.99710 * 13.12316 * 5 3 2 7 7 Si 1.86794 * 120.00073 * 193.12789 * 5 3 2 8 8 H 1.48498 * 109.47473 * 359.97438 * 7 5 3 9 9 H 1.48502 * 109.47158 * 120.00314 * 7 5 3 10 10 H 1.48504 * 109.47136 * 239.99642 * 7 5 3 11 11 C 1.46507 * 120.00169 * 179.97438 * 2 1 3 12 12 C 1.52997 * 109.46823 * 90.00383 * 11 2 1 13 13 H 1.08999 * 109.47126 * 304.99831 * 12 11 2 14 14 O 1.42893 * 109.47425 * 65.00578 * 12 11 2 15 15 C 1.53004 * 109.46680 * 185.00168 * 12 11 2 16 16 N 1.46500 * 109.47201 * 180.02562 * 15 12 11 17 17 C 1.46497 * 120.00277 * 89.99362 * 16 15 12 18 18 C 1.34776 * 119.99914 * 270.00411 * 16 15 12 19 19 O 1.21280 * 120.00238 * 359.97438 * 18 16 15 20 20 C 1.50895 * 120.00241 * 179.97438 * 18 16 15 21 21 H 1.09120 * 114.99132 * 325.58235 * 20 18 16 22 22 C 1.52791 * 117.33208 * 110.53424 * 20 18 16 23 23 H 1.11333 * 115.57314 * 359.34033 * 22 20 18 24 24 C 1.51658 * 124.77473 * 208.87008 * 22 20 18 25 25 C 1.53815 * 112.24659 * 337.24128 * 24 22 20 26 26 C 1.52602 * 110.24484 * 244.64121 * 25 24 22 27 27 C 1.51322 * 118.82054 * 38.76355 * 26 25 24 28 28 C 1.52988 * 120.53662 * 45.14543 * 27 26 25 29 29 C 1.53467 * 108.26129 * 359.62655 * 28 27 26 30 30 C 1.51015 * 59.95531 * 107.81833 * 22 20 18 31 31 H 1.11416 * 116.40972 * 253.56514 * 30 22 20 32 32 H 1.08993 * 109.47540 * 275.12816 * 1 2 3 33 33 H 1.08998 * 109.46578 * 35.13248 * 1 2 3 34 34 H 1.09000 * 109.46969 * 155.12704 * 1 2 3 35 35 H 0.97002 * 119.99790 * 179.97438 * 6 5 3 36 36 H 1.09000 * 109.47005 * 330.00608 * 11 2 1 37 37 H 1.09003 * 109.47243 * 210.00288 * 11 2 1 38 38 H 0.96704 * 114.00402 * 59.99208 * 14 12 11 39 39 H 1.08999 * 109.47065 * 299.99699 * 15 12 11 40 40 H 1.09001 * 109.47245 * 60.00477 * 15 12 11 41 41 H 1.09003 * 109.46892 * 90.00111 * 17 16 15 42 42 H 1.08993 * 109.47798 * 210.00260 * 17 16 15 43 43 H 1.09001 * 109.47440 * 330.01059 * 17 16 15 44 44 H 1.09907 * 109.71599 * 214.94011 * 24 22 20 45 45 H 1.10160 * 109.21806 * 98.41598 * 24 22 20 46 46 H 1.11694 * 107.63449 * 127.46379 * 25 24 22 47 47 H 1.08328 * 112.38641 * 13.01143 * 25 24 22 48 48 H 1.10854 * 108.00743 * 275.31050 * 26 25 24 49 49 H 1.10737 * 108.23870 * 162.66698 * 26 25 24 50 50 H 1.09803 * 108.60863 * 281.58403 * 27 26 25 51 51 H 1.10066 * 108.02875 * 167.59289 * 27 26 25 52 52 H 1.08489 * 109.50364 * 240.04314 * 28 27 26 53 53 H 1.08639 * 109.23764 * 118.86156 * 28 27 26 54 54 H 1.11033 * 107.01697 * 140.10607 * 29 28 27 55 55 H 1.06547 * 112.53418 * 23.20067 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1657 1.2228 -0.3643 5 6 1.5379 2.3406 0.4682 6 7 0.4117 2.2606 1.1447 7 14 2.3129 4.0078 0.1381 8 1 3.5664 3.8264 -0.6370 9 1 1.3669 4.8482 -0.6392 10 1 2.6216 4.6745 1.4287 11 6 2.1975 -1.2688 0.0006 12 6 2.4526 -1.7110 -1.4417 13 1 1.5063 -1.7557 -1.9808 14 8 3.3211 -0.7734 -2.0809 15 6 3.1061 -3.0944 -1.4429 16 7 3.3510 -3.5176 -2.8239 17 6 4.6200 -3.1875 -3.4772 18 6 2.4086 -4.2106 -3.4934 19 8 1.3582 -4.4842 -2.9526 20 6 2.6605 -4.6461 -4.9161 21 1 3.2545 -3.9517 -5.5125 22 6 2.8484 -6.1411 -5.1692 23 1 2.7940 -6.7918 -4.2675 24 6 3.6826 -6.7305 -6.2903 25 6 3.8660 -5.7469 -7.4586 26 6 3.1902 -6.2879 -8.7154 27 6 1.8627 -7.0017 -8.5801 28 6 0.7541 -6.4211 -7.7001 29 6 1.2703 -5.1190 -7.0728 30 6 1.5798 -5.4526 -5.6133 31 1 0.6648 -5.6652 -5.0143 32 1 -0.3634 0.0918 1.0235 33 1 -0.3632 0.8405 -0.5914 34 1 -0.3633 -0.9323 -0.4322 35 1 -0.0156 3.0675 1.4723 36 1 1.6084 -2.0282 0.5146 37 1 3.1500 -1.1382 0.5144 38 1 4.1838 -0.6817 -1.6537 39 1 4.0525 -3.0496 -0.9039 40 1 2.4437 -3.8096 -0.9554 41 1 5.3397 -3.9862 -3.2976 42 1 4.4590 -3.0780 -4.5496 43 1 5.0058 -2.2527 -3.0704 44 1 3.2142 -7.6558 -6.6540 45 1 4.6721 -7.0120 -5.8965 46 1 4.9604 -5.6708 -7.6682 47 1 3.5699 -4.7378 -7.1988 48 1 3.9005 -6.9749 -9.2178 49 1 3.0625 -5.4501 -9.4282 50 1 2.0490 -8.0233 -8.2233 51 1 1.4328 -7.1151 -9.5869 52 1 0.5039 -7.1300 -6.9179 53 1 -0.1163 -6.2085 -8.3145 54 1 0.4289 -4.3947 -7.0888 55 1 2.0624 -4.6810 -7.6349 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677174185.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:25 Heat of formation + Delta-G solvation = -55.794524 kcal Electronic energy + Delta-G solvation = -30884.793682 eV Core-core repulsion = 26922.556564 eV Total energy + Delta-G solvation = -3962.237118 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.63908 -40.00674 -38.76578 -36.88108 -35.91188 -35.85832 -33.36728 -33.34231 -31.36932 -29.24265 -28.17462 -27.91926 -27.77665 -26.98002 -24.79359 -23.37984 -22.22645 -21.83147 -21.20047 -20.54602 -19.31719 -18.81178 -18.24507 -17.52199 -16.99838 -16.86047 -16.58190 -16.29700 -16.19860 -15.70538 -15.44766 -15.21414 -15.15449 -14.82968 -14.62852 -14.30789 -14.10333 -13.95151 -13.76120 -13.57150 -13.29008 -13.20824 -13.02889 -12.81189 -12.74516 -12.57766 -12.55256 -12.33191 -12.25931 -12.25467 -12.10483 -11.96880 -11.88358 -11.81352 -11.57809 -11.29012 -11.07921 -10.87338 -10.79672 -10.70678 -10.59183 -10.33081 -9.57088 -8.68928 -7.78495 -5.26872 1.45081 1.46577 1.48105 1.58411 2.00345 2.53218 2.81644 3.33825 3.44381 3.54112 3.70078 3.74489 3.81441 3.83350 3.97065 4.02676 4.07660 4.10491 4.15986 4.19715 4.26725 4.38884 4.47176 4.50352 4.52922 4.54370 4.68979 4.73031 4.75940 4.76123 4.84350 4.88975 4.91229 4.98183 5.02304 5.09346 5.11473 5.15076 5.19478 5.23941 5.31654 5.32914 5.34703 5.40139 5.49305 5.54533 5.55824 5.60989 5.69810 5.71094 6.35279 6.40932 7.00437 7.17385 7.18479 7.87467 8.33772 9.25655 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.020076 B = 0.002244 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.338236 B =12475.436698 C =12510.652949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.613 5.613 3 C -0.236 4.236 4 H 0.080 0.920 5 C -0.069 4.069 6 N -0.948 5.948 7 Si 0.970 3.030 8 H -0.261 1.261 9 H -0.299 1.299 10 H -0.293 1.293 11 C 0.122 3.878 12 C 0.093 3.907 13 H 0.048 0.952 14 O -0.557 6.557 15 C 0.093 3.907 16 N -0.601 5.601 17 C 0.078 3.922 18 C 0.529 3.471 19 O -0.592 6.592 20 C -0.186 4.186 21 H 0.141 0.859 22 C -0.089 4.089 23 H 0.093 0.907 24 C -0.082 4.082 25 C -0.121 4.121 26 C -0.107 4.107 27 C -0.114 4.114 28 C -0.110 4.110 29 C -0.093 4.093 30 C -0.118 4.118 31 H 0.078 0.922 32 H 0.009 0.991 33 H 0.011 0.989 34 H 0.017 0.983 35 H 0.245 0.755 36 H 0.050 0.950 37 H 0.067 0.933 38 H 0.377 0.623 39 H 0.113 0.887 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.072 0.928 46 H 0.064 0.936 47 H 0.070 0.930 48 H 0.066 0.934 49 H 0.054 0.946 50 H 0.053 0.947 51 H 0.056 0.944 52 H 0.061 0.939 53 H 0.063 0.937 54 H 0.042 0.958 55 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.514 -21.713 -20.007 32.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.336 5.336 3 C -0.367 4.367 4 H 0.098 0.902 5 C -0.262 4.262 6 N -0.596 5.596 7 Si 0.799 3.201 8 H -0.186 1.186 9 H -0.227 1.227 10 H -0.220 1.220 11 C -0.005 4.005 12 C 0.030 3.970 13 H 0.067 0.933 14 O -0.363 6.363 15 C -0.031 4.031 16 N -0.331 5.331 17 C -0.064 4.064 18 C 0.319 3.681 19 O -0.473 6.473 20 C -0.206 4.206 21 H 0.158 0.842 22 C -0.108 4.108 23 H 0.111 0.889 24 C -0.119 4.119 25 C -0.158 4.158 26 C -0.145 4.145 27 C -0.152 4.152 28 C -0.147 4.147 29 C -0.130 4.130 30 C -0.137 4.137 31 H 0.096 0.904 32 H 0.027 0.973 33 H 0.029 0.971 34 H 0.036 0.964 35 H 0.054 0.946 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.225 0.775 39 H 0.131 0.869 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.098 0.902 43 H 0.100 0.900 44 H 0.101 0.899 45 H 0.091 0.909 46 H 0.083 0.917 47 H 0.088 0.912 48 H 0.085 0.915 49 H 0.072 0.928 50 H 0.072 0.928 51 H 0.075 0.925 52 H 0.080 0.920 53 H 0.082 0.918 54 H 0.061 0.939 55 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 11.407 -21.689 -20.072 31.677 hybrid contribution -0.161 1.274 0.837 1.533 sum 11.246 -20.414 -19.235 30.219 Atomic orbital electron populations 1.20494 0.83650 0.95106 0.97557 1.44022 1.01629 1.02009 1.85906 1.19580 0.98421 0.86158 1.32515 0.90208 1.25865 0.98948 1.02121 0.99264 1.70258 1.21311 1.27221 1.40805 0.85141 0.78001 0.80017 0.76933 1.18552 1.22669 1.21975 1.21548 0.96998 0.87410 0.94515 1.22713 0.92148 0.87326 0.94842 0.93345 1.86598 1.29479 1.63996 1.56259 1.22122 1.02639 0.95338 0.83037 1.47760 1.17760 1.53782 1.13803 1.22053 0.83483 1.02132 0.98696 1.20392 0.82655 0.77063 0.87979 1.90662 1.27515 1.58631 1.70528 1.22220 1.08111 0.97127 0.93154 0.84153 1.21981 0.98477 0.90304 1.00058 0.88875 1.21246 0.99493 0.98505 0.92621 1.21945 1.00976 0.98602 0.94243 1.21331 0.95486 1.00616 0.97025 1.21290 0.94364 0.99699 0.99814 1.21530 0.97891 0.96587 0.98736 1.21480 1.02117 0.97686 0.91747 1.22297 0.93233 1.01731 0.96475 0.90382 0.97277 0.97061 0.96448 0.94630 0.93210 0.91439 0.77538 0.86941 0.90750 0.90541 0.90202 0.89953 0.89897 0.90948 0.91685 0.91183 0.91483 0.92771 0.92804 0.92483 0.92022 0.91782 0.93945 0.87855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.61 8.98 127.77 1.15 10.76 16 2 N -0.61 -31.99 2.90 -726.94 -2.11 -34.10 16 3 C -0.24 -13.12 9.21 84.03 0.77 -12.35 16 4 H 0.08 4.17 7.58 -2.91 -0.02 4.15 16 5 C -0.07 -3.97 5.10 84.86 0.43 -3.54 16 6 N -0.95 -58.64 10.71 21.65 0.23 -58.41 16 7 Si 0.97 46.53 29.57 68.60 2.03 48.56 16 8 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 9 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 10 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 11 C 0.12 4.91 5.32 86.38 0.46 5.37 16 12 C 0.09 3.29 3.48 30.59 0.11 3.40 16 13 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 14 O -0.56 -19.34 11.30 -148.98 -1.68 -21.02 16 15 C 0.09 2.50 5.10 86.38 0.44 2.94 16 16 N -0.60 -14.96 2.80 -846.50 -2.37 -17.32 16 17 C 0.08 1.25 10.00 127.77 1.28 2.53 16 18 C 0.53 15.46 7.45 87.72 0.65 16.12 16 19 O -0.59 -22.84 15.79 -3.03 -0.05 -22.89 16 20 C -0.19 -3.87 4.47 -11.94 -0.05 -3.92 16 21 H 0.14 2.37 5.08 -2.32 -0.01 2.36 16 22 C -0.09 -1.50 5.82 -11.95 -0.07 -1.57 16 23 H 0.09 1.78 8.33 -1.12 -0.01 1.77 16 24 C -0.08 -0.89 5.37 30.43 0.16 -0.73 16 25 C -0.12 -1.15 4.76 30.74 0.15 -1.00 16 26 C -0.11 -0.96 4.56 29.91 0.14 -0.82 16 27 C -0.11 -1.18 4.80 30.04 0.14 -1.04 16 28 C -0.11 -1.50 6.10 30.75 0.19 -1.32 16 29 C -0.09 -1.53 4.91 30.71 0.15 -1.38 16 30 C -0.12 -2.43 4.17 -11.87 -0.05 -2.48 16 31 H 0.08 2.10 7.76 -1.08 -0.01 2.09 16 32 H 0.01 0.52 7.34 -2.39 -0.02 0.51 16 33 H 0.01 0.63 7.34 -2.39 -0.02 0.61 16 34 H 0.02 0.84 8.03 -2.39 -0.02 0.82 16 35 H 0.24 14.71 8.31 -92.71 -0.77 13.94 16 36 H 0.05 1.94 8.07 -2.39 -0.02 1.92 16 37 H 0.07 2.47 8.04 -2.39 -0.02 2.45 16 38 H 0.38 9.98 8.79 -74.05 -0.65 9.33 16 39 H 0.11 2.24 8.07 -2.39 -0.02 2.22 16 40 H 0.07 2.25 7.42 -2.39 -0.02 2.23 16 41 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.08 1.12 5.98 -2.39 -0.01 1.10 16 43 H 0.08 1.27 6.88 -2.39 -0.02 1.25 16 44 H 0.08 0.86 6.24 -1.90 -0.01 0.85 16 45 H 0.07 0.64 8.24 -1.77 -0.01 0.63 16 46 H 0.06 0.48 8.36 -0.92 -0.01 0.47 16 47 H 0.07 0.77 4.11 -2.74 -0.01 0.75 16 48 H 0.07 0.48 8.29 -1.39 -0.01 0.47 16 49 H 0.05 0.48 8.21 -1.45 -0.01 0.47 16 50 H 0.05 0.53 7.29 -1.96 -0.01 0.51 16 51 H 0.06 0.54 8.21 -1.82 -0.01 0.52 16 52 H 0.06 0.93 7.46 -2.66 -0.02 0.91 16 53 H 0.06 0.83 8.11 -2.58 -0.02 0.81 16 54 H 0.04 0.80 8.30 -1.29 -0.01 0.79 16 55 H 0.10 1.43 4.02 -3.65 -0.01 1.42 16 Total: -1.00 -76.30 410.15 2.39 -73.92 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: 0.28 Total: 20.29 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: 6.05 Total: 10.99 kcal Atomic # 7 Polarization: -105.59 SS G_CDS: -4.24 Total: -109.84 kcal Atomic # 8 Polarization: -42.19 SS G_CDS: -1.73 Total: -43.92 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.56 kcal Total: -76.30 2.39 -73.92 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677174185.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.121 kcal (2) G-P(sol) polarization free energy of solvation -76.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds