Wall clock time and date at job start Tue Mar 31 2020 22:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36940 * 119.99894 * 2 1 4 4 H 1.07999 * 120.00106 * 322.10217 * 3 2 1 5 5 C 1.38813 * 119.99728 * 142.09531 * 3 2 1 6 6 N 1.31618 * 119.99858 * 157.11962 * 5 3 2 7 7 Si 1.86799 * 119.99944 * 337.11819 * 5 3 2 8 8 H 1.48502 * 109.47307 * 95.73465 * 7 5 3 9 9 H 1.48501 * 109.47083 * 215.73200 * 7 5 3 10 10 H 1.48499 * 109.47427 * 335.72853 * 7 5 3 11 11 C 1.46496 * 119.99964 * 180.02562 * 2 1 3 12 12 C 1.53004 * 109.47363 * 89.99869 * 11 2 1 13 13 H 1.09000 * 109.47269 * 59.99682 * 12 11 2 14 14 O 1.42897 * 109.46712 * 299.99837 * 12 11 2 15 15 C 1.52994 * 109.47272 * 179.97438 * 12 11 2 16 16 N 1.46500 * 109.47190 * 184.99818 * 15 12 11 17 17 C 1.46498 * 119.99997 * 269.99844 * 16 15 12 18 18 C 1.34776 * 119.99826 * 90.00118 * 16 15 12 19 19 O 1.21282 * 120.00274 * 0.02562 * 18 16 15 20 20 C 1.50699 * 120.00078 * 179.72658 * 18 16 15 21 21 C 1.53002 * 109.46917 * 300.27177 * 20 18 16 22 22 C 1.52992 * 109.47351 * 299.99945 * 21 20 18 23 23 C 1.53001 * 109.47183 * 300.00027 * 22 21 20 24 24 C 1.53001 * 109.47022 * 180.02562 * 23 22 21 25 25 C 1.52996 * 117.50037 * 128.74615 * 24 23 22 26 26 C 1.53001 * 117.50292 * 60.08727 * 24 23 22 27 27 C 1.52994 * 109.47048 * 60.00016 * 23 22 21 28 28 C 1.53001 * 109.47301 * 299.99943 * 27 23 22 29 29 H 1.09002 * 109.46993 * 269.55268 * 1 2 3 30 30 H 1.09002 * 109.46871 * 29.55667 * 1 2 3 31 31 H 1.08998 * 109.46672 * 149.55607 * 1 2 3 32 32 H 0.96996 * 119.99781 * 180.02562 * 6 5 3 33 33 H 1.08995 * 109.47571 * 329.99768 * 11 2 1 34 34 H 1.09002 * 109.46870 * 209.99797 * 11 2 1 35 35 H 0.96699 * 114.00531 * 299.99856 * 14 12 11 36 36 H 1.09000 * 109.47218 * 65.00209 * 15 12 11 37 37 H 1.09003 * 109.47177 * 305.00164 * 15 12 11 38 38 H 1.09000 * 109.47085 * 269.99584 * 17 16 15 39 39 H 1.08993 * 109.47331 * 30.00321 * 17 16 15 40 40 H 1.09005 * 109.46523 * 149.99828 * 17 16 15 41 41 H 1.08995 * 109.47211 * 60.27080 * 20 18 16 42 42 H 1.08998 * 109.47065 * 60.00150 * 21 20 18 43 43 H 1.08998 * 109.47412 * 179.97438 * 21 20 18 44 44 H 1.09003 * 109.47402 * 179.97438 * 22 21 20 45 45 H 1.09007 * 109.47266 * 60.00264 * 22 21 20 46 46 H 1.08995 * 109.47025 * 299.99851 * 23 22 21 47 47 H 1.09003 * 115.54994 * 274.41422 * 24 23 22 48 48 H 1.09001 * 117.49636 * 0.02562 * 25 24 23 49 49 H 1.09003 * 117.50233 * 145.01328 * 25 24 23 50 50 H 1.08995 * 117.50022 * 214.98302 * 26 24 23 51 51 H 1.08999 * 117.49421 * 359.97191 * 26 24 23 52 52 H 1.09004 * 109.46809 * 180.02562 * 27 23 22 53 53 H 1.08995 * 109.47341 * 60.00029 * 27 23 22 54 54 H 1.09005 * 109.46812 * 300.00216 * 28 27 23 55 55 H 1.08995 * 109.47257 * 180.02562 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7806 2.0226 -0.5745 5 6 3.3182 1.3127 0.7386 6 7 4.2039 2.2315 0.4164 7 14 3.6335 0.1794 2.1896 8 1 4.4728 -0.9645 1.7511 9 1 4.3393 0.9296 3.2594 10 1 2.3393 -0.3278 2.7121 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7098 -1.4433 13 1 3.0416 -0.9500 -1.9568 14 8 1.2039 -1.8804 -2.1169 15 6 3.2181 -3.0345 -1.4439 16 7 3.5664 -3.3966 -2.8200 17 6 2.6463 -4.2100 -3.6186 18 6 4.7334 -2.9814 -3.3512 19 8 5.4954 -2.3084 -2.6899 20 6 5.0946 -3.3591 -4.7647 21 6 5.1481 -4.8832 -4.8875 22 6 6.2028 -5.4356 -3.9267 23 6 7.5708 -4.8473 -4.2781 24 6 8.6257 -5.4002 -3.3177 25 6 9.8890 -6.0084 -3.9299 26 6 8.8336 -6.9158 -3.2930 27 6 7.5173 -3.3232 -4.1553 28 6 6.4625 -2.7708 -5.1161 29 1 -0.3633 -0.0080 1.0277 30 1 -0.3633 0.8940 -0.5069 31 1 -0.3632 -0.8860 -0.5207 32 1 5.0206 2.3198 0.9323 33 1 1.6086 -2.0286 0.5129 34 1 3.1500 -1.1385 0.5133 35 1 0.6267 -2.5433 -1.7137 36 1 2.5935 -3.8152 -1.0098 37 1 4.1288 -2.9280 -0.8545 38 1 2.8771 -5.2657 -3.4758 39 1 1.6215 -4.0161 -3.3020 40 1 2.7557 -3.9534 -4.6724 41 1 4.3432 -2.9656 -5.4492 42 1 4.1736 -5.3023 -4.6372 43 1 5.4089 -5.1564 -5.9099 44 1 6.2407 -6.5214 -4.0139 45 1 5.9416 -5.1624 -2.9043 46 1 7.8320 -5.1204 -5.3004 47 1 8.7318 -4.8622 -2.3756 48 1 9.9688 -6.0143 -5.0170 49 1 10.8262 -5.8709 -3.3906 50 1 9.0767 -7.3749 -2.3348 51 1 8.2185 -7.5190 -3.9607 52 1 8.4918 -2.9041 -4.4060 53 1 7.2561 -3.0500 -3.1329 54 1 6.7238 -3.0440 -6.1385 55 1 6.4248 -1.6850 -5.0289 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677178467.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:38 Heat of formation + Delta-G solvation = -66.430878 kcal Electronic energy + Delta-G solvation = -31881.117868 eV Core-core repulsion = 27918.419523 eV Total energy + Delta-G solvation = -3962.698345 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.80186 -39.68912 -38.87151 -37.01343 -36.80553 -36.00357 -33.72495 -32.37759 -31.54938 -31.08392 -28.32302 -27.81974 -27.12189 -24.83706 -23.85446 -23.50877 -22.83852 -22.67295 -21.88001 -20.93545 -19.74145 -18.97527 -17.78094 -17.54700 -17.27947 -17.03075 -16.90906 -16.54157 -15.95121 -15.77563 -15.49829 -15.43183 -15.01702 -14.82903 -14.68737 -14.45879 -14.30880 -14.12648 -13.87017 -13.55303 -13.47974 -13.38841 -13.16877 -12.95263 -12.78685 -12.68322 -12.67605 -12.41505 -12.39469 -12.37159 -12.10784 -11.99408 -11.88381 -11.68404 -11.63122 -11.41488 -11.31719 -11.28402 -10.82769 -10.69093 -10.56544 -10.38511 -9.51491 -8.69519 -8.26438 -5.62775 1.23763 1.32588 1.45339 1.72514 2.09124 2.36294 2.91557 2.95509 3.39268 3.49698 3.58525 3.65619 3.78651 3.85468 3.98893 4.04358 4.07127 4.09666 4.20986 4.31138 4.34484 4.37227 4.44934 4.48295 4.52421 4.61363 4.63677 4.64076 4.69542 4.72252 4.76660 4.79672 4.83514 4.89223 4.96024 4.99919 5.02486 5.06860 5.13382 5.16990 5.18540 5.23922 5.26291 5.31422 5.32363 5.41004 5.44428 5.57780 5.70094 5.88384 6.10210 6.49136 6.93318 7.01604 7.31496 7.59833 8.00045 8.93863 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013624 B = 0.003291 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.629942 B = 8505.400300 C = 9442.106520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.130 3.870 2 N -0.617 5.617 3 C -0.263 4.263 4 H 0.031 0.969 5 C -0.025 4.025 6 N -0.949 5.949 7 Si 0.947 3.053 8 H -0.279 1.279 9 H -0.305 1.305 10 H -0.248 1.248 11 C 0.106 3.894 12 C 0.099 3.901 13 H 0.040 0.960 14 O -0.552 6.552 15 C 0.091 3.909 16 N -0.606 5.606 17 C 0.073 3.927 18 C 0.504 3.496 19 O -0.586 6.586 20 C -0.101 4.101 21 C -0.113 4.113 22 C -0.109 4.109 23 C -0.044 4.044 24 C -0.166 4.166 25 C -0.177 4.177 26 C -0.170 4.170 27 C -0.124 4.124 28 C -0.098 4.098 29 H 0.014 0.986 30 H 0.027 0.973 31 H 0.072 0.928 32 H 0.261 0.739 33 H 0.087 0.913 34 H 0.031 0.969 35 H 0.380 0.620 36 H 0.121 0.879 37 H 0.056 0.944 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.110 0.890 42 H 0.097 0.903 43 H 0.099 0.901 44 H 0.084 0.916 45 H 0.031 0.969 46 H 0.085 0.915 47 H 0.075 0.925 48 H 0.104 0.896 49 H 0.090 0.910 50 H 0.091 0.909 51 H 0.108 0.892 52 H 0.052 0.948 53 H 0.052 0.948 54 H 0.095 0.905 55 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.686 -26.664 -13.190 29.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.014 4.014 2 N -0.341 5.341 3 C -0.393 4.393 4 H 0.049 0.951 5 C -0.221 4.221 6 N -0.593 5.593 7 Si 0.775 3.225 8 H -0.207 1.207 9 H -0.234 1.234 10 H -0.172 1.172 11 C -0.020 4.020 12 C 0.037 3.963 13 H 0.058 0.942 14 O -0.358 6.358 15 C -0.034 4.034 16 N -0.338 5.338 17 C -0.068 4.068 18 C 0.294 3.706 19 O -0.466 6.466 20 C -0.122 4.122 21 C -0.150 4.150 22 C -0.147 4.147 23 C -0.062 4.062 24 C -0.184 4.184 25 C -0.214 4.214 26 C -0.206 4.206 27 C -0.162 4.162 28 C -0.136 4.136 29 H 0.032 0.968 30 H 0.045 0.955 31 H 0.091 0.909 32 H 0.070 0.930 33 H 0.105 0.895 34 H 0.049 0.951 35 H 0.229 0.771 36 H 0.139 0.861 37 H 0.074 0.926 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.128 0.872 42 H 0.115 0.885 43 H 0.117 0.883 44 H 0.102 0.898 45 H 0.050 0.950 46 H 0.104 0.896 47 H 0.093 0.907 48 H 0.123 0.877 49 H 0.109 0.891 50 H 0.110 0.890 51 H 0.127 0.873 52 H 0.070 0.930 53 H 0.071 0.929 54 H 0.114 0.886 55 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 1.389 -25.787 -13.188 28.997 hybrid contribution 0.650 0.621 1.524 1.769 sum 2.039 -25.166 -11.664 27.813 Atomic orbital electron populations 1.21167 0.81705 1.00505 0.98014 1.43982 1.02503 1.00903 1.86741 1.18650 1.06299 0.91684 1.22714 0.95087 1.26166 0.96675 0.98740 1.00522 1.70029 1.09196 1.39216 1.40863 0.85785 0.78474 0.78139 0.80083 1.20658 1.23389 1.17167 1.21897 0.96237 0.88486 0.95374 1.22462 0.84777 0.95074 0.94037 0.94198 1.86610 1.28741 1.64287 1.56178 1.22078 1.00129 0.97166 0.83986 1.47836 1.19291 1.52830 1.13848 1.22250 0.93738 0.94720 0.96119 1.21448 0.80559 0.78297 0.90332 1.90679 1.51316 1.40492 1.64089 1.21397 0.99349 0.99783 0.91698 1.21837 1.01062 0.90367 1.01714 1.21543 0.94121 1.00805 0.98222 1.20668 0.93727 0.93519 0.98317 1.22299 0.99163 0.96447 1.00503 1.23078 0.93163 1.04149 1.00972 1.22992 1.02723 0.92061 1.02861 1.21708 0.98056 0.95802 1.00596 1.21322 0.93209 0.98910 1.00113 0.96754 0.95454 0.90899 0.92968 0.89491 0.95093 0.77113 0.86150 0.92588 0.90002 0.89650 0.89804 0.87205 0.88467 0.88257 0.89751 0.94963 0.89649 0.90707 0.87721 0.89124 0.89004 0.87333 0.92955 0.92922 0.88644 0.94459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 5.08 10.44 127.77 1.33 6.42 16 2 N -0.62 -30.10 2.39 -726.92 -1.74 -31.84 16 3 C -0.26 -16.04 9.90 84.03 0.83 -15.21 16 4 H 0.03 2.12 8.06 -2.91 -0.02 2.10 16 5 C -0.02 -1.54 5.29 84.86 0.45 -1.09 16 6 N -0.95 -63.88 13.97 21.65 0.30 -63.58 16 7 Si 0.95 48.86 25.09 68.60 1.72 50.58 16 8 H -0.28 -14.02 6.68 99.48 0.66 -13.35 16 9 H -0.31 -15.86 7.11 99.48 0.71 -15.16 16 10 H -0.25 -11.76 7.11 99.48 0.71 -11.05 16 11 C 0.11 4.42 4.21 86.38 0.36 4.78 16 12 C 0.10 3.75 3.48 30.59 0.11 3.85 16 13 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 14 O -0.55 -16.93 10.88 -148.98 -1.62 -18.55 16 15 C 0.09 2.71 5.07 86.38 0.44 3.15 16 16 N -0.61 -15.80 2.84 -846.78 -2.40 -18.20 16 17 C 0.07 1.07 8.62 127.77 1.10 2.17 16 18 C 0.50 15.83 5.56 87.66 0.49 16.32 16 19 O -0.59 -25.44 13.24 -3.04 -0.04 -25.48 16 20 C -0.10 -2.18 2.21 -11.54 -0.03 -2.21 16 21 C -0.11 -1.54 5.09 30.59 0.16 -1.38 16 22 C -0.11 -1.89 4.82 30.59 0.15 -1.74 16 23 C -0.04 -0.85 2.34 -10.79 -0.03 -0.87 16 24 C -0.17 -3.33 5.15 -10.79 -0.06 -3.38 16 25 C -0.18 -2.81 10.18 30.62 0.31 -2.50 16 26 C -0.17 -2.57 9.74 30.62 0.30 -2.27 16 27 C -0.12 -3.28 4.89 30.59 0.15 -3.13 16 28 C -0.10 -2.35 5.09 30.59 0.16 -2.19 16 29 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.03 1.11 8.04 -2.39 -0.02 1.09 16 31 H 0.07 2.23 6.87 -2.39 -0.02 2.21 16 32 H 0.26 16.72 8.31 -92.71 -0.77 15.95 16 33 H 0.09 2.80 8.07 -2.39 -0.02 2.78 16 34 H 0.03 1.50 3.37 -2.39 -0.01 1.49 16 35 H 0.38 7.42 8.79 -74.06 -0.65 6.77 16 36 H 0.12 2.41 8.07 -2.39 -0.02 2.39 16 37 H 0.06 2.06 7.42 -2.39 -0.02 2.05 16 38 H 0.08 0.77 6.94 -2.39 -0.02 0.75 16 39 H 0.08 1.11 7.11 -2.39 -0.02 1.10 16 40 H 0.08 1.03 6.02 -2.38 -0.01 1.02 16 41 H 0.11 2.02 7.41 -2.39 -0.02 2.00 16 42 H 0.10 0.97 4.51 -2.39 -0.01 0.96 16 43 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.08 1.10 7.29 -2.39 -0.02 1.08 16 45 H 0.03 0.76 7.22 -2.38 -0.02 0.75 16 46 H 0.09 1.32 7.90 -2.39 -0.02 1.30 16 47 H 0.07 1.89 8.11 -2.39 -0.02 1.87 16 48 H 0.10 1.40 8.05 -2.39 -0.02 1.38 16 49 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 50 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 51 H 0.11 1.30 7.61 -2.39 -0.02 1.28 16 52 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 53 H 0.05 1.87 5.51 -2.39 -0.01 1.85 16 54 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 55 H 0.04 1.12 8.10 -2.39 -0.02 1.10 16 Total: -1.00 -86.12 407.15 2.62 -83.49 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: 0.18 Total: 22.86 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: 6.22 Total: 0.71 kcal Atomic # 7 Polarization: -109.78 SS G_CDS: -3.84 Total: -113.61 kcal Atomic # 8 Polarization: -42.37 SS G_CDS: -1.66 Total: -44.03 kcal Atomic # 14 Polarization: 48.86 SS G_CDS: 1.72 Total: 50.58 kcal Total: -86.12 2.62 -83.49 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677178467.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.060 kcal (2) G-P(sol) polarization free energy of solvation -86.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds