Wall clock time and date at job start Tue Mar 31 2020 22:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36944 * 119.99682 * 2 1 4 4 H 1.08004 * 119.99626 * 198.88712 * 3 2 1 5 5 C 1.38811 * 120.00112 * 18.88716 * 3 2 1 6 6 N 1.31617 * 119.99947 * 18.70343 * 5 3 2 7 7 Si 1.86796 * 120.00004 * 198.70481 * 5 3 2 8 8 H 1.48502 * 109.47491 * 94.98240 * 7 5 3 9 9 H 1.48497 * 109.47226 * 214.98381 * 7 5 3 10 10 H 1.48504 * 109.47130 * 334.98567 * 7 5 3 11 11 C 1.46497 * 120.00424 * 179.97438 * 2 1 3 12 12 C 1.53000 * 109.47120 * 270.00158 * 11 2 1 13 13 H 1.08996 * 109.47515 * 304.99920 * 12 11 2 14 14 O 1.42905 * 109.47125 * 64.99864 * 12 11 2 15 15 C 1.53000 * 109.47330 * 184.99821 * 12 11 2 16 16 N 1.46505 * 109.47125 * 180.02562 * 15 12 11 17 17 C 1.46500 * 119.99707 * 269.99642 * 16 15 12 18 18 C 1.34778 * 119.99746 * 90.00441 * 16 15 12 19 19 O 1.21280 * 120.00152 * 5.63291 * 18 16 15 20 20 C 1.50706 * 119.99523 * 185.64353 * 18 16 15 21 21 C 1.52995 * 109.47308 * 66.67098 * 20 18 16 22 22 C 1.52997 * 109.47085 * 179.97438 * 21 20 18 23 23 C 1.52995 * 109.47253 * 299.99887 * 22 21 20 24 24 C 1.52999 * 109.47183 * 179.97438 * 23 22 21 25 25 C 1.53006 * 117.49570 * 128.62375 * 24 23 22 26 26 C 1.52997 * 117.49817 * 60.00335 * 24 23 22 27 27 C 1.53008 * 109.47101 * 60.00200 * 23 22 21 28 28 C 1.52999 * 109.46624 * 299.99757 * 27 23 22 29 29 H 1.08994 * 109.47218 * 276.10493 * 1 2 3 30 30 H 1.08996 * 109.47052 * 36.10880 * 1 2 3 31 31 H 1.09001 * 109.46547 * 156.10392 * 1 2 3 32 32 H 0.96997 * 119.99886 * 180.02562 * 6 5 3 33 33 H 1.08999 * 109.47107 * 150.00249 * 11 2 1 34 34 H 1.09005 * 109.47143 * 30.00202 * 11 2 1 35 35 H 0.96703 * 114.00125 * 59.99619 * 14 12 11 36 36 H 1.08995 * 109.46921 * 59.99664 * 15 12 11 37 37 H 1.09003 * 109.47033 * 299.99809 * 15 12 11 38 38 H 1.08994 * 109.47100 * 268.78462 * 17 16 15 39 39 H 1.08995 * 109.46965 * 28.79338 * 17 16 15 40 40 H 1.09001 * 109.46467 * 148.79084 * 17 16 15 41 41 H 1.09003 * 109.46718 * 306.66783 * 20 18 16 42 42 H 1.09004 * 109.46799 * 299.99827 * 21 20 18 43 43 H 1.08994 * 109.47298 * 60.00167 * 21 20 18 44 44 H 1.08998 * 109.47376 * 179.97438 * 22 21 20 45 45 H 1.09004 * 109.47307 * 59.99731 * 22 21 20 46 46 H 1.08994 * 109.47238 * 299.99849 * 23 22 21 47 47 H 1.09005 * 115.55400 * 274.32661 * 24 23 22 48 48 H 1.09000 * 117.50194 * 0.02562 * 25 24 23 49 49 H 1.09005 * 117.49654 * 145.02529 * 25 24 23 50 50 H 1.09001 * 117.50175 * 214.97313 * 26 24 23 51 51 H 1.09002 * 117.50037 * 359.97438 * 26 24 23 52 52 H 1.08999 * 109.47201 * 180.02562 * 27 23 22 53 53 H 1.08994 * 109.47361 * 59.99724 * 27 23 22 54 54 H 1.08995 * 109.47743 * 300.00098 * 28 27 23 55 55 H 1.09005 * 109.46889 * 179.97438 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1861 1.2112 -0.3028 5 6 1.5116 2.3558 0.3891 6 7 0.4018 2.2968 1.0942 7 14 2.2281 4.0136 -0.0879 8 1 1.5792 4.4931 -1.3346 9 1 1.9852 4.9905 1.0038 10 1 3.6895 3.8752 -0.3123 11 6 2.1976 -1.2686 0.0006 12 6 2.4526 -1.7097 1.4433 13 1 2.9642 -0.9122 1.9820 14 8 1.2061 -1.9926 2.0823 15 6 3.3239 -2.9673 1.4457 16 7 3.5676 -3.3899 2.8272 17 6 4.7318 -2.8790 3.5549 18 6 2.7206 -4.2489 3.4284 19 8 1.8159 -4.7511 2.7958 20 6 2.8978 -4.5850 4.8867 21 6 2.6199 -3.3418 5.7341 22 6 2.7992 -3.6832 7.2146 23 6 1.8221 -4.7944 7.6037 24 6 2.0018 -5.1363 9.0842 25 6 0.7493 -5.1512 9.9628 26 6 1.7673 -4.0175 10.1011 27 6 2.1000 -6.0377 6.7564 28 6 1.9207 -5.6962 5.2758 29 1 -0.3633 0.1093 1.0218 30 1 -0.3633 0.8302 -0.6056 31 1 -0.3632 -0.9396 -0.4163 32 1 -0.0443 3.1142 1.3658 33 1 3.1500 -1.1385 -0.5133 34 1 1.6085 -2.0286 -0.5130 35 1 0.6955 -2.6942 1.6554 36 1 4.2746 -2.7515 0.9583 37 1 2.8122 -3.7649 0.9070 38 1 5.5749 -3.5549 3.4121 39 1 4.9909 -1.8899 3.1773 40 1 4.4957 -2.8120 4.6169 41 1 3.9198 -4.9221 5.0603 42 1 3.3158 -2.5500 5.4566 43 1 1.5981 -3.0048 5.5605 44 1 2.6017 -2.7975 7.8183 45 1 3.8210 -4.0206 7.3886 46 1 0.8004 -4.4571 7.4298 47 1 2.7822 -5.8639 9.3073 48 1 -0.2028 -4.9179 9.4861 49 1 0.7055 -5.8887 10.7643 50 1 2.3932 -4.0091 10.9935 51 1 1.4855 -3.0377 9.7154 52 1 1.4036 -6.8292 7.0332 53 1 3.1217 -6.3750 6.9303 54 1 0.8989 -5.3589 5.1018 55 1 2.1191 -6.5819 4.6721 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677178468.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:42 Heat of formation + Delta-G solvation = -70.509243 kcal Electronic energy + Delta-G solvation = -31139.747027 eV Core-core repulsion = 27176.871831 eV Total energy + Delta-G solvation = -3962.875196 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.47755 -39.74407 -38.72343 -37.00932 -36.75652 -36.03962 -33.30420 -32.24089 -31.61086 -30.78663 -28.14233 -27.79174 -27.05230 -24.97794 -23.90600 -23.47958 -22.81769 -22.22307 -21.40818 -20.73070 -20.02281 -18.78517 -18.04570 -17.64849 -17.12294 -16.72056 -16.50743 -16.40659 -16.05107 -15.59787 -15.44779 -15.33507 -15.07704 -14.94793 -14.63508 -14.56018 -14.09616 -13.77435 -13.66682 -13.40024 -13.36403 -13.16504 -13.00754 -12.81188 -12.79537 -12.55748 -12.46574 -12.38609 -12.25093 -12.16125 -12.00261 -11.99654 -11.94198 -11.79464 -11.58224 -11.45495 -11.29763 -11.20412 -10.95272 -10.61854 -10.58421 -10.43597 -9.52328 -8.73150 -7.80972 -5.25042 1.45360 1.47584 1.56395 1.70698 2.14736 2.51909 2.94701 3.29770 3.46423 3.61189 3.67283 3.72700 3.78336 3.89530 4.07313 4.08650 4.13660 4.21802 4.25454 4.28698 4.39810 4.42359 4.49481 4.53890 4.55186 4.58131 4.60785 4.66432 4.68452 4.78363 4.80861 4.83091 4.83985 4.94815 4.96899 5.00496 5.10074 5.17167 5.20164 5.27432 5.28383 5.30400 5.30616 5.33118 5.36805 5.47173 5.57872 5.62405 5.64647 5.75322 6.30970 6.49793 6.93880 7.14040 7.28830 7.88294 8.32704 9.22427 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013863 B = 0.002612 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.343517 B =10715.580705 C =11620.405063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.185 3.815 2 N -0.609 5.609 3 C -0.262 4.262 4 H 0.078 0.922 5 C -0.059 4.059 6 N -0.936 5.936 7 Si 0.967 3.033 8 H -0.290 1.290 9 H -0.299 1.299 10 H -0.263 1.263 11 C 0.121 3.879 12 C 0.083 3.917 13 H 0.064 0.936 14 O -0.564 6.564 15 C 0.091 3.909 16 N -0.610 5.610 17 C 0.059 3.941 18 C 0.514 3.486 19 O -0.581 6.581 20 C -0.094 4.094 21 C -0.112 4.112 22 C -0.101 4.101 23 C -0.058 4.058 24 C -0.142 4.142 25 C -0.188 4.188 26 C -0.183 4.183 27 C -0.100 4.100 28 C -0.095 4.095 29 H 0.001 0.999 30 H 0.009 0.991 31 H 0.025 0.975 32 H 0.245 0.755 33 H 0.067 0.933 34 H 0.057 0.943 35 H 0.366 0.634 36 H 0.106 0.894 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.093 0.907 41 H 0.120 0.880 42 H 0.079 0.921 43 H 0.036 0.964 44 H 0.064 0.936 45 H 0.086 0.914 46 H 0.050 0.950 47 H 0.117 0.883 48 H 0.084 0.916 49 H 0.102 0.898 50 H 0.103 0.897 51 H 0.086 0.914 52 H 0.068 0.932 53 H 0.083 0.917 54 H 0.041 0.959 55 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.714 -18.574 14.871 26.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.332 5.332 3 C -0.392 4.392 4 H 0.096 0.904 5 C -0.254 4.254 6 N -0.582 5.582 7 Si 0.796 3.204 8 H -0.217 1.217 9 H -0.226 1.226 10 H -0.187 1.187 11 C -0.006 4.006 12 C 0.021 3.979 13 H 0.083 0.917 14 O -0.368 6.368 15 C -0.033 4.033 16 N -0.342 5.342 17 C -0.083 4.083 18 C 0.304 3.696 19 O -0.461 6.461 20 C -0.115 4.115 21 C -0.149 4.149 22 C -0.138 4.138 23 C -0.076 4.076 24 C -0.160 4.160 25 C -0.225 4.225 26 C -0.220 4.220 27 C -0.138 4.138 28 C -0.133 4.133 29 H 0.020 0.980 30 H 0.028 0.972 31 H 0.044 0.956 32 H 0.054 0.946 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.212 0.788 36 H 0.124 0.876 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.089 0.911 40 H 0.111 0.889 41 H 0.137 0.863 42 H 0.097 0.903 43 H 0.055 0.945 44 H 0.083 0.917 45 H 0.105 0.895 46 H 0.068 0.932 47 H 0.135 0.865 48 H 0.102 0.898 49 H 0.120 0.880 50 H 0.121 0.879 51 H 0.104 0.896 52 H 0.087 0.913 53 H 0.101 0.899 54 H 0.060 0.940 55 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.378 -18.225 14.969 25.767 hybrid contribution -0.586 1.054 -0.717 1.403 sum 9.793 -17.171 14.252 24.369 Atomic orbital electron populations 1.20423 0.83040 0.95154 0.97389 1.44125 1.01988 1.01617 1.85422 1.19593 0.96739 0.85708 1.37131 0.90450 1.25755 0.98896 1.01700 0.99019 1.70337 1.21794 1.26726 1.39384 0.85241 0.78561 0.79815 0.76800 1.21678 1.22584 1.18699 1.21650 0.96957 0.87517 0.94466 1.22951 0.84177 0.95107 0.95694 0.91746 1.86593 1.33498 1.59661 1.57096 1.22159 1.01331 0.96475 0.83348 1.47818 1.27017 1.45242 1.14089 1.22324 0.87204 1.00337 0.98419 1.21191 0.80579 0.77558 0.90261 1.90604 1.34019 1.54230 1.67280 1.21320 1.03098 0.97755 0.89301 1.21641 1.01375 0.96002 0.95888 1.21507 1.00610 0.98350 0.93347 1.20746 0.98774 0.95621 0.92503 1.22340 1.00376 1.02040 0.91261 1.23066 0.93988 1.02238 1.03179 1.22981 1.03398 0.94138 1.01458 1.21507 1.02979 0.97037 0.92228 1.21286 0.98035 0.96985 0.97013 0.98032 0.97196 0.95614 0.94618 0.91430 0.92430 0.78781 0.87564 0.90452 0.90047 0.91068 0.88914 0.86253 0.90297 0.94477 0.91684 0.89546 0.93155 0.86536 0.89761 0.87968 0.87860 0.89554 0.91283 0.89886 0.93963 0.91899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.78 8.64 127.77 1.10 10.89 16 2 N -0.61 -31.26 2.89 -726.94 -2.10 -33.36 16 3 C -0.26 -14.48 9.67 84.03 0.81 -13.67 16 4 H 0.08 4.06 7.88 -2.91 -0.02 4.03 16 5 C -0.06 -3.37 4.99 84.86 0.42 -2.95 16 6 N -0.94 -57.86 10.80 21.65 0.23 -57.63 16 7 Si 0.97 45.78 29.59 68.60 2.03 47.81 16 8 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 9 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 10 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 11 C 0.12 4.80 5.36 86.38 0.46 5.26 16 12 C 0.08 3.12 3.48 30.59 0.11 3.22 16 13 H 0.06 2.80 8.14 -2.39 -0.02 2.78 16 14 O -0.56 -24.17 11.83 -147.86 -1.75 -25.91 16 15 C 0.09 2.55 5.17 86.38 0.45 3.00 16 16 N -0.61 -15.72 2.83 -846.76 -2.39 -18.11 16 17 C 0.06 1.05 9.90 127.77 1.27 2.31 16 18 C 0.51 14.69 6.38 87.66 0.56 15.25 16 19 O -0.58 -20.97 14.72 -1.91 -0.03 -21.00 16 20 C -0.09 -1.95 1.70 -11.54 -0.02 -1.97 16 21 C -0.11 -2.36 4.85 30.59 0.15 -2.21 16 22 C -0.10 -1.59 5.04 30.59 0.15 -1.43 16 23 C -0.06 -0.93 2.34 -10.79 -0.03 -0.95 16 24 C -0.14 -1.88 5.15 -10.79 -0.06 -1.94 16 25 C -0.19 -2.60 10.18 30.60 0.31 -2.29 16 26 C -0.18 -2.47 9.73 30.59 0.30 -2.18 16 27 C -0.10 -1.51 5.18 30.60 0.16 -1.36 16 28 C -0.10 -2.02 4.52 30.60 0.14 -1.88 16 29 H 0.00 0.08 7.37 -2.39 -0.02 0.06 16 30 H 0.01 0.53 7.28 -2.39 -0.02 0.52 16 31 H 0.03 1.16 7.83 -2.39 -0.02 1.15 16 32 H 0.24 14.74 8.31 -92.71 -0.77 13.97 16 33 H 0.07 2.43 8.03 -2.39 -0.02 2.41 16 34 H 0.06 2.08 7.85 -2.38 -0.02 2.06 16 35 H 0.37 14.54 8.64 -74.06 -0.64 13.90 16 36 H 0.11 2.39 8.07 -2.39 -0.02 2.37 16 37 H 0.08 2.27 7.35 -2.39 -0.02 2.25 16 38 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.07 1.33 8.06 -2.39 -0.02 1.31 16 40 H 0.09 1.44 4.06 -2.39 -0.01 1.43 16 41 H 0.12 1.77 7.75 -2.39 -0.02 1.75 16 42 H 0.08 1.62 5.29 -2.38 -0.01 1.61 16 43 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.06 1.07 7.29 -2.39 -0.02 1.05 16 45 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 46 H 0.05 1.03 7.90 -2.39 -0.02 1.01 16 47 H 0.12 1.25 8.11 -2.38 -0.02 1.23 16 48 H 0.08 1.32 8.05 -2.39 -0.02 1.30 16 49 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 50 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 51 H 0.09 1.32 7.61 -2.39 -0.02 1.30 16 52 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 53 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 54 H 0.04 1.14 8.02 -2.39 -0.02 1.12 16 55 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 Total: -1.00 -73.81 420.33 2.49 -71.32 By element: Atomic # 1 Polarization: 29.58 SS G_CDS: 0.21 Total: 29.79 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: 6.29 Total: 7.10 kcal Atomic # 7 Polarization: -104.84 SS G_CDS: -4.26 Total: -109.10 kcal Atomic # 8 Polarization: -45.14 SS G_CDS: -1.78 Total: -46.91 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -73.81 2.49 -71.32 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677178468.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.806 kcal (2) G-P(sol) polarization free energy of solvation -73.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds