Wall clock time and date at job start Tue Mar 31 2020 22:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42902 * 114.00142 * 2 1 4 4 C 1.53003 * 109.46741 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.46498 * 179.43555 * 4 3 2 6 6 C 1.50703 * 110.53865 * 298.52014 * 5 4 3 7 7 O 1.21281 * 119.99842 * 113.01006 * 6 5 4 8 8 N 1.34782 * 120.00004 * 293.01227 * 6 5 4 9 9 C 1.46499 * 119.99600 * 185.01178 * 8 6 5 10 10 C 1.53008 * 109.46753 * 180.02562 * 9 8 6 11 11 H 1.08999 * 110.01502 * 305.69792 * 10 9 8 12 12 C 1.53871 * 110.03039 * 67.09493 * 10 9 8 13 13 C 1.54267 * 106.59964 * 119.28653 * 12 10 9 14 14 C 1.54890 * 104.19437 * 23.60569 * 13 12 10 15 15 H 1.09001 * 110.75886 * 80.37293 * 14 13 12 16 16 N 1.46503 * 110.75468 * 203.56093 * 14 13 12 17 17 C 1.36941 * 119.99604 * 273.54352 * 16 14 13 18 18 H 1.07996 * 120.00446 * 0.02562 * 17 16 14 19 19 C 1.38820 * 119.99656 * 179.97438 * 17 16 14 20 20 N 1.31619 * 119.99923 * 0.02562 * 19 17 16 21 21 Si 1.86792 * 119.99731 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47503 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47059 * 120.00220 * 21 19 17 24 24 H 1.48502 * 109.47047 * 239.99792 * 21 19 17 25 25 C 1.54264 * 110.03095 * 184.31127 * 10 9 8 26 26 C 1.54886 * 110.49175 * 61.13534 * 5 4 3 27 27 C 1.54887 * 102.75116 * 156.62247 * 26 5 4 28 28 C 1.54265 * 104.19331 * 322.05647 * 27 26 5 29 29 C 1.53873 * 106.60103 * 23.60994 * 28 27 26 30 30 H 1.08998 * 109.47782 * 59.99570 * 1 2 3 31 31 H 1.09004 * 109.47549 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47273 * 299.99497 * 1 2 3 33 33 H 1.09003 * 109.46553 * 60.00623 * 3 2 1 34 34 H 1.08993 * 109.46937 * 300.00298 * 3 2 1 35 35 H 1.08998 * 109.47610 * 59.43739 * 4 3 2 36 36 H 1.08992 * 109.47229 * 299.42940 * 4 3 2 37 37 H 0.96993 * 119.99925 * 5.02051 * 8 6 5 38 38 H 1.09002 * 109.47704 * 300.00190 * 9 8 6 39 39 H 1.08994 * 109.47395 * 60.00564 * 9 8 6 40 40 H 1.09003 * 110.02856 * 238.56491 * 12 10 9 41 41 H 1.08995 * 110.03361 * 359.94814 * 12 10 9 42 42 H 1.09000 * 110.48783 * 142.28074 * 13 12 10 43 43 H 1.08993 * 110.48492 * 264.79348 * 13 12 10 44 44 H 0.96993 * 120.00045 * 93.55182 * 16 14 13 45 45 H 0.96995 * 119.99926 * 180.02562 * 20 19 17 46 46 H 1.09001 * 110.48839 * 335.78605 * 25 10 9 47 47 H 1.09000 * 110.48768 * 98.42600 * 25 10 9 48 48 H 1.08997 * 110.75354 * 274.93374 * 26 5 4 49 49 H 1.09003 * 110.75624 * 38.30210 * 26 5 4 50 50 H 1.09000 * 110.48387 * 203.38415 * 27 26 5 51 51 H 1.08999 * 110.49012 * 80.73295 * 27 26 5 52 52 H 1.09007 * 110.03518 * 264.32770 * 28 27 26 53 53 H 1.09002 * 110.07624 * 142.92040 * 28 27 26 54 54 H 1.08996 * 110.03731 * 240.71393 * 29 28 27 55 55 H 1.09003 * 110.03089 * 119.27846 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1845 -0.0006 5 6 4.1577 2.5822 -0.0149 6 6 3.7557 3.3273 -1.2616 7 8 3.0378 4.3015 -1.1809 8 7 4.1939 2.9110 -2.4663 9 6 3.8947 3.6967 -3.6660 10 6 4.5017 3.0087 -4.8906 11 1 5.5664 2.8368 -4.7324 12 6 3.7853 1.6726 -5.1536 13 6 3.1599 1.7773 -6.5600 14 6 4.0121 2.8547 -7.2754 15 1 4.9446 2.4276 -7.6444 16 7 3.2574 3.4719 -8.3689 17 6 3.2583 2.8964 -9.6115 18 1 3.8150 1.9874 -9.7853 19 6 2.5428 3.4808 -10.6476 20 7 1.8640 4.5884 -10.4357 21 14 2.5434 2.6954 -12.3424 22 1 3.3766 1.4664 -12.3182 23 1 1.1526 2.3425 -12.7249 24 1 3.1009 3.6527 -13.3314 25 6 4.2878 3.8793 -6.1460 26 6 3.7399 3.3746 1.2487 27 6 4.8694 4.4260 1.3819 28 6 6.1467 3.6624 0.9753 29 6 5.6943 2.4901 0.0873 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.6886 1.8463 0.8901 34 1 1.6885 1.8463 -0.8899 35 1 3.8560 0.6351 -0.8857 36 1 3.8581 0.6523 0.8941 37 1 4.7072 2.0912 -2.5389 38 1 2.8145 3.7727 -3.7906 39 1 4.3196 4.6950 -3.5619 40 1 4.5024 0.8523 -5.1240 41 1 3.0058 1.5139 -4.4084 42 1 3.2340 0.8235 -7.0824 43 1 2.1193 2.0942 -6.4920 44 1 2.7573 4.2881 -8.2128 45 1 1.3637 4.9966 -11.1596 46 1 3.4302 4.5386 -6.0115 47 1 5.1845 4.4586 -6.3658 48 1 2.7758 3.8605 1.0986 49 1 3.7136 2.7230 2.1221 50 1 4.9455 4.7757 2.4114 51 1 4.6937 5.2626 0.7057 52 1 6.6542 3.2842 1.8628 53 1 6.8131 4.3191 0.4159 54 1 5.9820 1.5431 0.5437 55 1 6.1402 2.5784 -0.9035 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689022046.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:40 Heat of formation + Delta-G solvation = -127.012036 kcal Electronic energy + Delta-G solvation = -30533.129366 eV Core-core repulsion = 26567.804025 eV Total energy + Delta-G solvation = -3965.325341 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.72150 -39.71563 -38.84693 -38.05184 -36.33553 -35.03095 -33.58448 -32.54366 -30.47893 -29.62040 -29.01760 -28.56565 -26.80383 -25.92716 -24.85584 -23.68310 -23.15250 -21.38971 -21.28951 -20.70546 -20.02407 -19.10666 -17.87641 -17.59312 -17.24413 -16.98497 -16.75852 -16.73478 -16.28586 -15.84668 -15.76901 -15.51698 -15.41531 -15.04730 -14.74954 -14.36433 -14.25624 -14.07367 -13.85398 -13.59710 -13.35475 -13.20285 -12.98456 -12.71140 -12.64909 -12.45563 -12.36649 -12.24234 -12.12942 -12.09478 -11.98923 -11.91903 -11.82974 -11.75005 -11.65229 -11.57126 -11.50412 -11.31013 -11.25971 -10.91303 -10.71421 -10.61189 -10.07114 -8.98936 -7.94806 -5.23000 1.46185 1.47003 1.57026 1.63754 2.17590 2.55989 2.69842 3.37594 3.44117 3.58398 3.66152 3.71549 3.78773 3.81643 4.04789 4.05821 4.18711 4.29093 4.34470 4.38402 4.42643 4.45603 4.47425 4.48774 4.54723 4.57150 4.60710 4.63412 4.67679 4.78102 4.78505 4.80151 4.82611 4.89379 4.95024 5.04211 5.05665 5.07614 5.08584 5.11423 5.16881 5.19051 5.26509 5.36589 5.38427 5.47042 5.49642 5.50325 5.55496 5.63006 6.13038 6.28248 6.57570 7.26966 7.33185 8.11731 8.33263 9.29288 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014990 B = 0.002260 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.503093 B =12385.710265 C =13438.257744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.406 6.406 3 C 0.058 3.942 4 C -0.095 4.095 5 C -0.074 4.074 6 C 0.521 3.479 7 O -0.582 6.582 8 N -0.714 5.714 9 C 0.135 3.865 10 C -0.083 4.083 11 H 0.105 0.895 12 C -0.107 4.107 13 C -0.139 4.139 14 C 0.165 3.835 15 H 0.054 0.946 16 N -0.737 5.737 17 C -0.235 4.235 18 H 0.077 0.923 19 C -0.081 4.081 20 N -0.973 5.973 21 Si 0.972 3.028 22 H -0.264 1.264 23 H -0.296 1.296 24 H -0.294 1.294 25 C -0.115 4.115 26 C -0.105 4.105 27 C -0.127 4.127 28 C -0.123 4.123 29 C -0.110 4.110 30 H 0.035 0.965 31 H 0.102 0.898 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.025 0.975 35 H 0.084 0.916 36 H 0.106 0.894 37 H 0.414 0.586 38 H 0.044 0.956 39 H 0.060 0.940 40 H 0.087 0.913 41 H 0.062 0.938 42 H 0.050 0.950 43 H 0.035 0.965 44 H 0.371 0.629 45 H 0.250 0.750 46 H 0.052 0.948 47 H 0.071 0.929 48 H 0.056 0.944 49 H 0.097 0.903 50 H 0.078 0.922 51 H 0.041 0.959 52 H 0.086 0.914 53 H 0.059 0.941 54 H 0.103 0.897 55 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.812 -9.180 29.779 32.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.326 6.326 3 C -0.019 4.019 4 C -0.133 4.133 5 C -0.078 4.078 6 C 0.309 3.691 7 O -0.462 6.462 8 N -0.366 5.366 9 C 0.011 3.989 10 C -0.102 4.102 11 H 0.123 0.877 12 C -0.145 4.145 13 C -0.179 4.179 14 C 0.056 3.944 15 H 0.072 0.928 16 N -0.376 5.376 17 C -0.367 4.367 18 H 0.095 0.905 19 C -0.273 4.273 20 N -0.624 5.624 21 Si 0.801 3.199 22 H -0.188 1.188 23 H -0.223 1.223 24 H -0.221 1.221 25 C -0.154 4.154 26 C -0.143 4.143 27 C -0.165 4.165 28 C -0.161 4.161 29 C -0.147 4.147 30 H 0.054 0.946 31 H 0.120 0.880 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.043 0.957 35 H 0.102 0.898 36 H 0.124 0.876 37 H 0.251 0.749 38 H 0.062 0.938 39 H 0.078 0.922 40 H 0.105 0.895 41 H 0.081 0.919 42 H 0.069 0.931 43 H 0.054 0.946 44 H 0.202 0.798 45 H 0.059 0.941 46 H 0.070 0.930 47 H 0.090 0.910 48 H 0.074 0.926 49 H 0.116 0.884 50 H 0.097 0.903 51 H 0.059 0.941 52 H 0.104 0.896 53 H 0.078 0.922 54 H 0.122 0.878 55 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.499 -8.775 29.669 32.086 hybrid contribution -1.031 0.485 -1.564 1.935 sum 7.468 -8.290 28.105 30.239 Atomic orbital electron populations 1.22901 0.79938 1.03904 1.00358 1.87797 1.21005 1.28239 1.95509 1.22611 0.95127 0.84310 0.99814 1.21528 0.91926 0.94228 1.05605 1.21612 0.98650 0.95035 0.92465 1.20935 0.78642 0.84013 0.85518 1.90682 1.38347 1.29714 1.87429 1.45909 1.56623 1.28064 1.06005 1.21298 0.99279 0.94640 0.83690 1.21824 1.01285 0.94890 0.92171 0.87666 1.22125 0.99715 0.97107 0.95533 1.22892 0.99041 0.99527 0.96443 1.21472 0.93295 0.92600 0.87006 0.92753 1.42628 1.58394 1.29568 1.06994 1.19681 1.23482 1.05677 0.87857 0.90530 1.25584 1.00974 0.98631 1.02095 1.69833 1.37634 1.22235 1.32682 0.85083 0.76942 0.77835 0.79998 1.18823 1.22307 1.22087 1.22481 1.01323 0.97596 0.94038 1.22502 0.98736 0.97265 0.95775 1.22348 0.94972 0.97647 1.01525 1.22154 0.97082 0.96635 1.00204 1.22313 0.90055 1.00884 1.01475 0.94629 0.87972 0.93056 0.92522 0.95700 0.89787 0.87594 0.74882 0.93753 0.92211 0.89454 0.91914 0.93124 0.94558 0.79784 0.94146 0.92966 0.90986 0.92553 0.88435 0.90285 0.94054 0.89573 0.92190 0.87817 0.90795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.64 16 2 O -0.41 -7.99 10.70 -148.98 -1.59 -9.59 16 3 C 0.06 1.05 5.51 71.98 0.40 1.45 16 4 C -0.10 -1.23 4.54 30.60 0.14 -1.09 16 5 C -0.07 -1.07 0.47 -51.85 -0.02 -1.10 16 6 C 0.52 11.49 5.15 87.66 0.45 11.94 16 7 O -0.58 -18.25 15.49 -3.03 -0.05 -18.30 16 8 N -0.71 -13.46 4.88 -463.04 -2.26 -15.72 16 9 C 0.13 3.21 4.70 86.38 0.41 3.62 16 10 C -0.08 -1.86 2.97 -10.07 -0.03 -1.89 16 11 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 12 C -0.11 -2.53 6.16 31.32 0.19 -2.34 16 13 C -0.14 -4.77 6.51 31.67 0.21 -4.57 16 14 C 0.16 6.37 3.53 46.31 0.16 6.53 16 15 H 0.05 2.09 8.12 -2.39 -0.02 2.07 16 16 N -0.74 -37.74 5.26 -316.71 -1.66 -39.40 16 17 C -0.24 -13.17 9.98 84.03 0.84 -12.33 16 18 H 0.08 4.11 7.83 -2.91 -0.02 4.08 16 19 C -0.08 -4.73 5.50 84.86 0.47 -4.26 16 20 N -0.97 -60.82 13.06 21.65 0.28 -60.54 16 21 Si 0.97 46.72 29.55 68.60 2.03 48.75 16 22 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 23 H -0.30 -14.27 7.11 99.48 0.71 -13.57 16 24 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 25 C -0.12 -3.60 5.98 31.69 0.19 -3.41 16 26 C -0.11 -1.59 4.49 31.88 0.14 -1.45 16 27 C -0.13 -1.90 6.56 31.67 0.21 -1.69 16 28 C -0.12 -1.34 6.80 31.32 0.21 -1.12 16 29 C -0.11 -1.06 5.85 31.32 0.18 -0.87 16 30 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.06 0.97 7.22 -2.39 -0.02 0.95 16 34 H 0.02 0.57 7.30 -2.39 -0.02 0.55 16 35 H 0.08 0.98 8.00 -2.39 -0.02 0.96 16 36 H 0.11 0.97 8.10 -2.39 -0.02 0.95 16 37 H 0.41 5.34 7.73 -92.71 -0.72 4.62 16 38 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.06 1.47 7.59 -2.39 -0.02 1.45 16 42 H 0.05 1.76 8.14 -2.39 -0.02 1.75 16 43 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.37 20.62 7.73 -92.71 -0.72 19.90 16 45 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 46 H 0.05 1.81 7.74 -2.39 -0.02 1.79 16 47 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 48 H 0.06 1.15 7.16 -2.39 -0.02 1.13 16 49 H 0.10 1.03 8.06 -2.39 -0.02 1.01 16 50 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 51 H 0.04 0.85 8.01 -2.39 -0.02 0.83 16 52 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 53 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 54 H 0.10 0.54 7.81 -2.39 -0.02 0.52 16 55 H 0.07 0.69 7.11 -2.39 -0.02 0.68 16 Total: -1.00 -73.36 425.63 1.56 -71.80 By element: Atomic # 1 Polarization: 34.52 SS G_CDS: -0.58 Total: 33.94 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: 5.39 Total: -10.95 kcal Atomic # 7 Polarization: -112.02 SS G_CDS: -3.64 Total: -115.66 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: -1.64 Total: -27.88 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.75 kcal Total: -73.36 1.56 -71.80 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689022046.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.209 kcal (2) G-P(sol) polarization free energy of solvation -73.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds