Wall clock time and date at job start Tue Mar 31 2020 22:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42907 * 113.99720 * 2 1 4 4 H 1.08998 * 109.47092 * 329.99967 * 3 2 1 5 5 C 1.53000 * 109.47053 * 89.99902 * 3 2 1 6 6 C 1.52997 * 109.46805 * 60.00001 * 5 3 2 7 7 C 1.53001 * 109.47269 * 60.00127 * 6 5 3 8 8 C 1.53007 * 109.46896 * 299.99516 * 7 6 5 9 9 H 1.09000 * 109.47086 * 300.00150 * 8 7 6 10 10 C 1.53001 * 109.46896 * 179.97438 * 8 7 6 11 11 C 1.50701 * 109.47104 * 65.00189 * 10 8 7 12 12 O 1.21283 * 120.00022 * 0.02562 * 11 10 8 13 13 N 1.34772 * 119.99889 * 179.97438 * 11 10 8 14 14 C 1.46500 * 120.00153 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.47382 * 180.02562 * 14 13 11 16 16 C 1.53001 * 109.46974 * 179.97438 * 15 14 13 17 17 N 1.46504 * 109.47080 * 180.02562 * 16 15 14 18 18 C 1.36937 * 119.99538 * 270.00379 * 17 16 15 19 19 H 1.08001 * 119.99673 * 140.53780 * 18 17 16 20 20 C 1.38809 * 120.00311 * 320.53051 * 18 17 16 21 21 N 1.31618 * 119.99935 * 340.28373 * 20 18 17 22 22 Si 1.86802 * 119.99976 * 160.27808 * 20 18 17 23 23 H 1.48499 * 109.46942 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46837 * 120.00351 * 22 20 18 25 25 H 1.48501 * 109.47335 * 240.00184 * 22 20 18 26 26 C 1.46495 * 120.00136 * 89.99715 * 17 16 15 27 27 C 1.53005 * 117.49616 * 114.66949 * 26 17 16 28 28 C 1.52998 * 59.99952 * 107.48887 * 27 26 17 29 29 C 1.52997 * 109.46766 * 60.00176 * 8 7 6 30 30 H 1.09003 * 109.47158 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.47261 * 299.99834 * 1 2 3 32 32 H 1.09001 * 109.47191 * 59.99913 * 1 2 3 33 33 H 1.08999 * 109.47031 * 299.99965 * 5 3 2 34 34 H 1.09000 * 109.46840 * 179.97438 * 5 3 2 35 35 H 1.09000 * 109.47339 * 299.99594 * 6 5 3 36 36 H 1.09005 * 109.46970 * 179.97438 * 6 5 3 37 37 H 1.08998 * 109.47178 * 179.97438 * 7 6 5 38 38 H 1.09000 * 109.47375 * 59.99489 * 7 6 5 39 39 H 1.08995 * 109.47154 * 304.99774 * 10 8 7 40 40 H 1.09000 * 109.46616 * 185.00410 * 10 8 7 41 41 H 0.96999 * 120.00333 * 0.02562 * 13 11 10 42 42 H 1.09003 * 109.46850 * 59.99923 * 14 13 11 43 43 H 1.09004 * 109.46951 * 300.00531 * 14 13 11 44 44 H 1.08999 * 109.46728 * 60.00428 * 15 14 13 45 45 H 1.08994 * 109.46859 * 299.99920 * 15 14 13 46 46 H 1.09004 * 109.47185 * 60.00411 * 16 15 14 47 47 H 1.09000 * 109.47777 * 300.00063 * 16 15 14 48 48 H 0.97003 * 119.99719 * 175.01085 * 21 20 18 49 49 H 1.08995 * 115.56514 * 328.98193 * 26 17 16 50 50 H 1.09002 * 117.49635 * 0.02562 * 27 26 17 51 51 H 1.08997 * 117.49855 * 214.98499 * 27 26 17 52 52 H 1.09004 * 117.49566 * 107.49019 * 28 27 26 53 53 H 1.08996 * 117.50081 * 252.48740 * 28 27 26 54 54 H 1.09000 * 109.47339 * 60.00129 * 29 8 7 55 55 H 1.09005 * 109.46970 * 180.02562 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 -0.5138 5 6 2.2176 1.7715 1.4425 6 6 3.1514 0.7975 2.1637 7 6 4.5001 0.7553 1.4425 8 6 4.2926 0.2894 -0.0001 9 1 3.8493 -0.7064 -0.0001 10 6 5.6413 0.2478 -0.7215 11 6 6.5187 -0.7999 -0.0864 12 8 6.1058 -1.4499 0.8507 13 7 7.7617 -1.0155 -0.5603 14 6 8.6145 -2.0344 0.0567 15 6 9.9632 -2.0759 -0.6646 16 6 10.8540 -3.1396 -0.0197 17 7 12.1456 -3.1789 -0.7100 18 6 12.3228 -4.0097 -1.7840 19 1 12.8921 -3.6740 -2.6382 20 6 11.7710 -5.2834 -1.7748 21 7 11.4241 -5.8420 -0.6347 22 14 11.5207 -6.2044 -3.3806 23 1 11.9893 -5.3639 -4.5116 24 1 12.2961 -7.4706 -3.3510 25 1 10.0783 -6.5112 -3.5557 26 6 13.2474 -2.3293 -0.2514 27 6 14.4866 -3.0246 0.3161 28 6 14.5458 -2.3586 -1.0601 29 6 3.3588 1.2634 -0.7213 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8901 32 1 -0.3633 0.5138 -0.8900 33 1 1.2567 1.8015 1.9563 34 1 2.6613 2.7671 1.4425 35 1 2.7081 -0.1983 2.1637 36 1 3.2995 1.1296 3.1913 37 1 5.1655 0.0618 1.9565 38 1 4.9434 1.7511 1.4424 39 1 6.1246 1.2218 -0.6446 40 1 5.4840 0.0022 -1.7718 41 1 8.0919 -0.4960 -1.3100 42 1 8.1308 -3.0082 -0.0203 43 1 8.7720 -1.7890 1.1070 44 1 10.4466 -1.1020 -0.5871 45 1 9.8060 -2.3211 -1.7149 46 1 10.3707 -4.1136 -0.0967 47 1 11.0111 -2.8941 1.0306 48 1 10.9727 -6.7006 -0.6329 49 1 12.9542 -1.3795 0.1957 50 1 14.4821 -4.1142 0.3477 51 1 15.0086 -2.5322 1.1365 52 1 15.1070 -1.4279 -1.1450 53 1 14.5806 -3.0099 -1.9333 54 1 3.8021 2.2591 -0.7213 55 1 3.2107 0.9312 -1.7488 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689991393.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:00 Heat of formation + Delta-G solvation = -83.671718 kcal Electronic energy + Delta-G solvation = -29659.902656 eV Core-core repulsion = 25696.456693 eV Total energy + Delta-G solvation = -3963.445964 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.09587 -39.94383 -38.83705 -37.23901 -36.48123 -35.20874 -33.58708 -33.10098 -31.22954 -31.03946 -28.41089 -27.32999 -26.82930 -25.03901 -23.44594 -23.06085 -22.67545 -22.40583 -21.54250 -20.97312 -20.48523 -18.25954 -17.92654 -17.32101 -17.13077 -16.88068 -16.63982 -16.54152 -16.33609 -16.13196 -15.83569 -15.62652 -15.29209 -14.65606 -14.47743 -14.34608 -14.23197 -13.92314 -13.65003 -13.42003 -13.34394 -13.22745 -12.97597 -12.81539 -12.68988 -12.62063 -12.50668 -12.40088 -12.26377 -12.13071 -11.99417 -11.87250 -11.84711 -11.42701 -11.41048 -11.28617 -11.20487 -11.15495 -10.88738 -10.51322 -10.48740 -10.32282 -9.99757 -8.49272 -7.77836 -5.50681 1.42359 1.46400 1.55425 1.74966 2.29768 2.49279 2.97507 3.16663 3.41849 3.52632 3.72555 3.79223 3.89417 4.01780 4.18357 4.23029 4.28940 4.32531 4.33792 4.42837 4.48162 4.49379 4.55645 4.57903 4.58715 4.61625 4.64931 4.73031 4.75995 4.78061 4.84896 4.88396 4.89489 4.96053 4.98704 5.00797 5.08614 5.09769 5.14232 5.31759 5.35617 5.38107 5.40420 5.46828 5.49106 5.57145 5.60967 5.67523 5.68724 5.82803 6.40853 6.47398 6.67582 7.16602 7.38000 7.85289 8.37484 9.10940 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016768 B = 0.001966 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.397781 B =14237.366705 C =15180.121174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.407 6.407 3 C 0.083 3.917 4 H 0.079 0.921 5 C -0.136 4.136 6 C -0.111 4.111 7 C -0.117 4.117 8 C -0.063 4.063 9 H 0.048 0.952 10 C -0.129 4.129 11 C 0.501 3.499 12 O -0.584 6.584 13 N -0.720 5.720 14 C 0.134 3.866 15 C -0.120 4.120 16 C 0.153 3.847 17 N -0.568 5.568 18 C -0.256 4.256 19 H 0.061 0.939 20 C -0.036 4.036 21 N -0.915 5.915 22 Si 0.951 3.049 23 H -0.264 1.264 24 H -0.295 1.295 25 H -0.290 1.290 26 C 0.102 3.898 27 C -0.224 4.224 28 C -0.179 4.179 29 C -0.107 4.107 30 H 0.083 0.917 31 H 0.046 0.954 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.088 0.912 35 H 0.041 0.959 36 H 0.059 0.941 37 H 0.048 0.952 38 H 0.072 0.928 39 H 0.123 0.877 40 H 0.113 0.887 41 H 0.414 0.586 42 H 0.037 0.963 43 H 0.056 0.944 44 H 0.072 0.928 45 H 0.054 0.946 46 H 0.058 0.942 47 H 0.028 0.972 48 H 0.249 0.751 49 H 0.115 0.885 50 H 0.051 0.949 51 H 0.100 0.900 52 H 0.112 0.888 53 H 0.074 0.926 54 H 0.101 0.899 55 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.082 21.449 -0.652 28.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.327 6.327 3 C 0.026 3.974 4 H 0.097 0.903 5 C -0.173 4.173 6 C -0.149 4.149 7 C -0.154 4.154 8 C -0.082 4.082 9 H 0.066 0.934 10 C -0.169 4.169 11 C 0.290 3.710 12 O -0.465 6.465 13 N -0.372 5.372 14 C 0.009 3.991 15 C -0.160 4.160 16 C 0.027 3.973 17 N -0.285 5.285 18 C -0.387 4.387 19 H 0.078 0.922 20 C -0.234 4.234 21 N -0.559 5.559 22 Si 0.779 3.221 23 H -0.188 1.188 24 H -0.222 1.222 25 H -0.216 1.216 26 C -0.006 4.006 27 C -0.265 4.265 28 C -0.217 4.217 29 C -0.144 4.144 30 H 0.101 0.899 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.107 0.893 35 H 0.060 0.940 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.090 0.910 39 H 0.141 0.859 40 H 0.131 0.869 41 H 0.251 0.749 42 H 0.056 0.944 43 H 0.074 0.926 44 H 0.090 0.910 45 H 0.073 0.927 46 H 0.076 0.924 47 H 0.047 0.953 48 H 0.058 0.942 49 H 0.132 0.868 50 H 0.069 0.931 51 H 0.118 0.882 52 H 0.131 0.869 53 H 0.092 0.908 54 H 0.119 0.881 55 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -18.279 20.630 0.037 27.563 hybrid contribution -0.016 -1.231 -0.654 1.394 sum -18.295 19.399 -0.618 26.673 Atomic orbital electron populations 1.22889 0.80511 1.03061 1.00608 1.87969 1.20507 1.29049 1.95140 1.22288 0.95099 0.84337 0.95709 0.90300 1.22018 0.99755 0.99628 0.95912 1.21345 0.95558 0.99272 0.98704 1.21645 0.97229 1.00998 0.95552 1.20720 0.93350 0.99427 0.94706 0.93373 1.21821 0.94964 0.98560 1.01512 1.21506 0.81996 0.84464 0.83075 1.90668 1.74124 1.51074 1.30615 1.46061 1.14808 1.39634 1.36692 1.21045 0.90463 0.90692 0.96899 1.22069 0.93418 1.00692 0.99815 1.20661 0.85807 0.98242 0.92584 1.43552 1.06498 1.44894 1.33578 1.19217 1.32878 0.92266 0.94289 0.92186 1.25917 1.02333 0.96467 0.98679 1.70199 1.42986 1.16972 1.25741 0.85474 0.77130 0.78340 0.81119 1.18760 1.22247 1.21627 1.21577 0.83430 0.95024 1.00586 1.23266 1.07610 0.98601 0.96986 1.23018 1.01677 1.02374 0.94614 1.21726 0.93203 1.00567 0.98918 0.89852 0.93543 0.92879 0.91780 0.89331 0.94014 0.92239 0.93350 0.90974 0.85932 0.86917 0.74912 0.94429 0.92566 0.90970 0.92689 0.92399 0.95313 0.94167 0.86768 0.93063 0.88160 0.86948 0.90788 0.88084 0.90787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.82 113.37 1.23 1.57 16 2 O -0.41 -8.02 9.00 -148.98 -1.34 -9.36 16 3 C 0.08 1.18 2.92 30.59 0.09 1.27 16 4 H 0.08 0.79 7.79 -2.39 -0.02 0.78 16 5 C -0.14 -1.89 5.63 30.59 0.17 -1.72 16 6 C -0.11 -2.21 5.78 30.59 0.18 -2.03 16 7 C -0.12 -2.49 4.94 30.60 0.15 -2.34 16 8 C -0.06 -1.26 1.69 -10.79 -0.02 -1.28 16 9 H 0.05 1.35 7.50 -2.39 -0.02 1.33 16 10 C -0.13 -2.23 5.17 29.85 0.15 -2.08 16 11 C 0.50 13.78 7.55 87.66 0.66 14.44 16 12 O -0.58 -21.74 13.97 -3.04 -0.04 -21.78 16 13 N -0.72 -18.76 5.56 -463.06 -2.57 -21.34 16 14 C 0.13 4.47 5.67 86.38 0.49 4.96 16 15 C -0.12 -4.24 5.65 30.59 0.17 -4.07 16 16 C 0.15 6.95 5.33 86.38 0.46 7.41 16 17 N -0.57 -27.21 2.75 -678.03 -1.86 -29.08 16 18 C -0.26 -13.54 8.47 84.03 0.71 -12.83 16 19 H 0.06 3.17 6.75 -2.91 -0.02 3.15 16 20 C -0.04 -2.00 4.98 84.86 0.42 -1.57 16 21 N -0.92 -53.69 11.50 21.65 0.25 -53.45 16 22 Si 0.95 44.35 29.60 68.60 2.03 46.38 16 23 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 24 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 25 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 26 C 0.10 4.14 6.56 44.99 0.30 4.43 16 27 C -0.22 -8.95 10.36 30.60 0.32 -8.63 16 28 C -0.18 -6.63 9.80 30.59 0.30 -6.34 16 29 C -0.11 -1.43 4.94 30.59 0.15 -1.28 16 30 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.05 0.52 7.87 -2.38 -0.02 0.51 16 32 H 0.05 0.53 8.08 -2.39 -0.02 0.51 16 33 H 0.06 0.83 7.87 -2.39 -0.02 0.81 16 34 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.04 1.04 7.68 -2.39 -0.02 1.02 16 36 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 37 H 0.05 1.39 5.96 -2.39 -0.01 1.38 16 38 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.41 8.02 8.47 -92.71 -0.79 7.24 16 42 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 45 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 46 H 0.06 3.10 5.59 -2.39 -0.01 3.08 16 47 H 0.03 1.26 8.07 -2.39 -0.02 1.24 16 48 H 0.25 14.24 8.32 -92.71 -0.77 13.47 16 49 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 50 H 0.05 2.46 8.14 -2.39 -0.02 2.44 16 51 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 52 H 0.11 3.30 8.14 -2.38 -0.02 3.28 16 53 H 0.07 3.10 6.46 -2.39 -0.02 3.08 16 54 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 55 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 Total: -1.00 -71.11 426.64 2.46 -68.66 By element: Atomic # 1 Polarization: 29.98 SS G_CDS: 0.06 Total: 30.04 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: 5.93 Total: -10.08 kcal Atomic # 7 Polarization: -99.67 SS G_CDS: -4.19 Total: -103.86 kcal Atomic # 8 Polarization: -29.76 SS G_CDS: -1.38 Total: -31.15 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -71.11 2.46 -68.66 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689991393.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.013 kcal (2) G-P(sol) polarization free energy of solvation -71.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds