Wall clock time and date at job start Tue Mar 31 2020 23:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00125 * 2 1 4 4 H 1.48500 * 109.47237 * 270.00091 * 3 2 1 5 5 H 1.48506 * 109.47030 * 29.99560 * 3 2 1 6 6 H 1.48496 * 109.47404 * 149.99892 * 3 2 1 7 7 C 1.38807 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00560 * 197.01470 * 7 2 1 9 9 N 1.36943 * 119.99782 * 17.00985 * 7 2 1 10 10 C 1.47085 * 120.87943 * 26.59509 * 9 7 2 11 11 C 1.53233 * 108.51968 * 128.79060 * 10 9 7 12 12 N 1.46898 * 109.34305 * 53.82976 * 11 10 9 13 13 C 1.46898 * 111.00219 * 172.74287 * 12 11 10 14 14 C 1.53004 * 109.47128 * 169.99790 * 13 12 11 15 15 N 1.46497 * 109.47064 * 179.97438 * 14 13 12 16 16 C 1.34779 * 119.99868 * 179.97438 * 15 14 13 17 17 O 1.21271 * 120.00080 * 0.02562 * 16 15 14 18 18 C 1.50704 * 119.99556 * 180.02562 * 16 15 14 19 19 C 1.53003 * 109.46743 * 180.02562 * 18 16 15 20 20 C 1.52997 * 109.46989 * 180.02562 * 19 18 16 21 21 N 1.46904 * 109.47014 * 180.02562 * 20 19 18 22 22 C 1.48527 * 111.00611 * 52.59840 * 21 20 19 23 23 C 1.54931 * 103.23222 * 159.72176 * 22 21 20 24 24 C 1.54600 * 102.91933 * 322.59069 * 23 22 21 25 25 C 1.47900 * 111.00052 * 169.99973 * 21 20 19 26 26 C 1.46896 * 111.26664 * 296.89539 * 12 11 10 27 27 C 1.47074 * 120.88324 * 206.56687 * 9 7 2 28 28 H 0.97006 * 119.99914 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.62639 * 9.08066 * 10 9 7 30 30 H 1.09002 * 109.78568 * 248.59437 * 10 9 7 31 31 H 1.09004 * 109.49031 * 173.78586 * 11 10 9 32 32 H 1.08997 * 109.49877 * 293.86299 * 11 10 9 33 33 H 1.09000 * 109.47322 * 289.99896 * 13 12 11 34 34 H 1.09000 * 109.47323 * 50.00046 * 13 12 11 35 35 H 1.09000 * 109.47106 * 300.00238 * 14 13 12 36 36 H 1.08997 * 109.47061 * 60.00405 * 14 13 12 37 37 H 0.97002 * 120.00404 * 0.02562 * 15 14 13 38 38 H 1.09000 * 109.47348 * 299.99957 * 18 16 15 39 39 H 1.09000 * 109.47672 * 60.00337 * 18 16 15 40 40 H 1.09000 * 109.46787 * 299.99840 * 19 18 16 41 41 H 1.08997 * 109.47389 * 60.00012 * 19 18 16 42 42 H 1.09000 * 109.47104 * 299.99497 * 20 19 18 43 43 H 1.09000 * 109.47670 * 59.99727 * 20 19 18 44 44 H 1.08996 * 110.67014 * 278.16341 * 22 21 20 45 45 H 1.09004 * 110.66339 * 41.28726 * 22 21 20 46 46 H 1.08998 * 110.72651 * 204.23202 * 23 22 21 47 47 H 1.08998 * 110.72267 * 80.94635 * 23 22 21 48 48 H 1.09001 * 110.30552 * 263.04029 * 24 23 22 49 49 H 1.08997 * 110.30794 * 140.87582 * 24 23 22 50 50 H 1.09002 * 109.91882 * 333.50480 * 25 21 20 51 51 H 1.09001 * 109.91681 * 94.60427 * 25 21 20 52 52 H 1.09005 * 109.49472 * 303.13919 * 26 12 11 53 53 H 1.09004 * 109.51569 * 183.08280 * 26 12 11 54 54 H 1.09005 * 109.63035 * 350.91919 * 27 9 7 55 55 H 1.08997 * 109.62936 * 111.49710 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0548 -1.2225 0.2742 9 7 1.3705 -2.3622 -0.3459 10 6 0.2048 -2.3427 -1.2427 11 6 0.4410 -3.3533 -2.3700 12 7 0.7559 -4.6653 -1.7892 13 6 0.8201 -5.7001 -2.8299 14 6 1.3893 -6.9889 -2.2333 15 7 1.4527 -8.0210 -3.2710 16 6 1.9251 -9.2477 -2.9734 17 8 2.2972 -9.4972 -1.8464 18 6 1.9909 -10.3092 -4.0411 19 6 2.5600 -11.5980 -3.4444 20 6 2.6274 -12.6755 -4.5285 21 7 3.1732 -13.9132 -3.9555 22 6 2.4240 -14.3111 -2.7364 23 6 2.7535 -15.8183 -2.5937 24 6 2.7795 -16.3067 -4.0603 25 6 3.0334 -15.0418 -4.9011 26 6 2.0031 -4.6196 -1.0146 27 6 1.8311 -3.6609 0.1684 28 1 -0.4850 0.8401 0.0004 29 1 0.0842 -1.3450 -1.6646 30 1 -0.6925 -2.6164 -0.6875 31 1 -0.4579 -3.4326 -2.9816 32 1 1.2741 -3.0200 -2.9888 33 1 -0.1815 -5.8898 -3.2160 34 1 1.4638 -5.3601 -3.6412 35 1 2.3908 -6.7992 -1.8472 36 1 0.7456 -7.3290 -1.4221 37 1 1.1555 -7.8213 -4.1725 38 1 0.9893 -10.4992 -4.4268 39 1 2.6343 -9.9691 -4.8526 40 1 3.5616 -11.4083 -3.0584 41 1 1.9163 -11.9381 -2.6332 42 1 1.6260 -12.8653 -4.9149 43 1 3.2713 -12.3354 -5.3395 44 1 2.7790 -13.7559 -1.8682 45 1 1.3533 -14.1631 -2.8774 46 1 1.9747 -16.3318 -2.0299 47 1 3.7270 -15.9574 -2.1236 48 1 1.8214 -16.7525 -4.3276 49 1 3.5858 -17.0257 -4.2054 50 1 2.1904 -14.8644 -5.5690 51 1 3.9491 -15.1557 -5.4813 52 1 2.8147 -4.2687 -1.6521 53 1 2.2379 -5.6172 -0.6432 54 1 2.7856 -3.5347 0.6793 55 1 1.0921 -4.0633 0.8613 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690080869.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:12 Heat of formation + Delta-G solvation = -29.985849 kcal Electronic energy + Delta-G solvation = -28908.890533 eV Core-core repulsion = 24980.065315 eV Total energy + Delta-G solvation = -3928.825218 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.90137 -39.93243 -39.67672 -36.93117 -35.42434 -35.28019 -33.29463 -32.14262 -31.71271 -30.18623 -29.75822 -27.98621 -26.66518 -25.20582 -24.21354 -23.48358 -22.49923 -21.77081 -21.52844 -21.01847 -20.77269 -18.76849 -18.10345 -17.32929 -17.15434 -16.88996 -16.80009 -16.61266 -16.16239 -15.95579 -15.62470 -15.37371 -15.24036 -15.14365 -14.85994 -14.83960 -14.48791 -14.15323 -13.90870 -13.71180 -13.29375 -13.16260 -13.03669 -12.97763 -12.73473 -12.61834 -12.43269 -12.35000 -12.29540 -12.23531 -12.10188 -12.04404 -11.95756 -11.91260 -11.61879 -11.51979 -11.44994 -11.40914 -10.92499 -10.59630 -10.09775 -9.35913 -9.30328 -8.69861 -7.88777 -5.33710 1.46676 1.47231 1.56829 1.66771 2.09235 2.50122 3.01046 3.12478 3.26662 3.65455 3.68984 3.76440 3.79920 3.87493 4.02190 4.04474 4.08342 4.20720 4.27745 4.32111 4.34956 4.42709 4.47612 4.53475 4.55298 4.61600 4.63461 4.68292 4.70826 4.74575 4.75505 4.84900 4.91620 4.92330 4.93978 4.97069 5.02574 5.07558 5.13411 5.17026 5.24160 5.28772 5.32999 5.35245 5.43149 5.60013 5.68191 5.95309 6.11481 6.12686 6.20560 6.36167 6.57544 7.12376 7.28828 7.82320 8.36681 9.18070 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.039935 B = 0.001418 C = 0.001403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.965171 B =19740.852834 C =19948.639879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.049 4.049 3 Si 0.969 3.031 4 H -0.283 1.283 5 H -0.294 1.294 6 H -0.270 1.270 7 C -0.267 4.267 8 H 0.066 0.934 9 N -0.614 5.614 10 C 0.183 3.817 11 C 0.053 3.947 12 N -0.541 5.541 13 C 0.053 3.947 14 C 0.124 3.876 15 N -0.717 5.717 16 C 0.506 3.494 17 O -0.590 6.590 18 C -0.127 4.127 19 C -0.099 4.099 20 C 0.052 3.948 21 N -0.538 5.538 22 C 0.031 3.969 23 C -0.125 4.125 24 C -0.129 4.129 25 C 0.032 3.968 26 C 0.050 3.950 27 C 0.142 3.858 28 H 0.251 0.749 29 H 0.059 0.941 30 H -0.001 1.001 31 H 0.088 0.912 32 H 0.024 0.976 33 H 0.096 0.904 34 H 0.047 0.953 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.418 0.582 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.048 0.952 43 H 0.087 0.913 44 H 0.070 0.930 45 H 0.046 0.954 46 H 0.081 0.919 47 H 0.069 0.931 48 H 0.075 0.925 49 H 0.078 0.922 50 H 0.051 0.949 51 H 0.080 0.920 52 H 0.025 0.975 53 H 0.090 0.910 54 H 0.058 0.942 55 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.450 -30.483 -16.153 34.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.245 4.245 3 Si 0.797 3.203 4 H -0.210 1.210 5 H -0.220 1.220 6 H -0.195 1.195 7 C -0.397 4.397 8 H 0.084 0.916 9 N -0.338 5.338 10 C 0.057 3.943 11 C -0.076 4.076 12 N -0.267 5.267 13 C -0.074 4.074 14 C -0.001 4.001 15 N -0.370 5.370 16 C 0.294 3.706 17 O -0.470 6.470 18 C -0.167 4.167 19 C -0.138 4.138 20 C -0.076 4.076 21 N -0.263 5.263 22 C -0.097 4.097 23 C -0.163 4.163 24 C -0.167 4.167 25 C -0.095 4.095 26 C -0.080 4.080 27 C 0.017 3.983 28 H 0.060 0.940 29 H 0.077 0.923 30 H 0.017 0.983 31 H 0.106 0.894 32 H 0.042 0.958 33 H 0.115 0.885 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.255 0.745 38 H 0.139 0.861 39 H 0.139 0.861 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.066 0.934 43 H 0.105 0.895 44 H 0.088 0.912 45 H 0.065 0.935 46 H 0.099 0.901 47 H 0.087 0.913 48 H 0.094 0.906 49 H 0.096 0.904 50 H 0.069 0.931 51 H 0.098 0.902 52 H 0.044 0.956 53 H 0.108 0.892 54 H 0.076 0.924 55 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 2.791 -30.522 -14.914 34.085 hybrid contribution -0.123 1.541 -0.518 1.630 sum 2.668 -28.982 -15.432 32.942 Atomic orbital electron populations 1.70190 1.06625 1.25917 1.55366 1.25783 0.96089 1.01435 1.01148 0.85237 0.78001 0.79386 0.77628 1.21000 1.22027 1.19514 1.19550 0.92902 0.86021 1.41237 0.91615 1.44406 1.34284 1.02006 1.53106 1.20652 0.87754 0.96561 0.89317 1.22587 0.99810 0.88606 0.96568 1.61916 1.34130 1.05787 1.24828 1.22246 1.02110 0.90066 0.93028 1.21264 1.00654 0.87126 0.91026 1.45856 1.65411 1.11289 1.14479 1.21406 0.75683 0.83601 0.89902 1.90714 1.49772 1.81486 1.25060 1.21632 1.05725 0.92383 0.96970 1.21284 1.01278 0.93398 0.97796 1.22304 0.98794 0.89575 0.96941 1.64773 1.52647 1.03319 1.05522 1.23240 0.96228 0.96427 0.93804 1.22504 1.02322 0.94357 0.97163 1.22409 1.02710 0.97183 0.94441 1.22932 1.01372 0.90268 0.94941 1.22563 0.89947 0.99681 0.95761 1.21127 0.97355 0.85736 0.94127 0.93991 0.92261 0.98326 0.89394 0.95822 0.88535 0.93495 0.92479 0.92269 0.74492 0.86127 0.86055 0.92738 0.92726 0.93414 0.89497 0.91194 0.93544 0.90080 0.91269 0.90618 0.90373 0.93054 0.90208 0.95644 0.89171 0.92374 0.96744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.87 11.15 21.65 0.24 -55.63 16 2 C -0.05 -2.78 4.93 84.86 0.42 -2.36 16 3 Si 0.97 45.24 29.59 68.60 2.03 47.27 16 4 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 5 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 6 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 7 C -0.27 -15.07 9.63 84.03 0.81 -14.26 16 8 H 0.07 3.62 7.88 -2.91 -0.02 3.60 16 9 N -0.61 -32.00 3.04 -698.15 -2.12 -34.12 16 10 C 0.18 9.03 5.42 86.35 0.47 9.49 16 11 C 0.05 1.99 5.58 86.38 0.48 2.47 16 12 N -0.54 -18.05 4.78 -895.27 -4.28 -22.33 16 13 C 0.05 1.24 5.38 86.30 0.46 1.71 16 14 C 0.12 2.90 4.93 86.38 0.43 3.33 16 15 N -0.72 -12.24 5.56 -463.07 -2.57 -14.81 16 16 C 0.51 10.29 7.83 87.66 0.69 10.98 16 17 O -0.59 -18.33 15.98 -3.00 -0.05 -18.38 16 18 C -0.13 -1.40 5.70 29.85 0.17 -1.23 16 19 C -0.10 -1.51 4.16 30.59 0.13 -1.39 16 20 C 0.05 0.60 5.03 86.30 0.43 1.04 16 21 N -0.54 -7.81 5.40 -883.05 -4.76 -12.57 16 22 C 0.03 0.44 5.10 86.65 0.44 0.88 16 23 C -0.13 -1.41 7.06 31.80 0.22 -1.18 16 24 C -0.13 -1.18 6.93 31.47 0.22 -0.96 16 25 C 0.03 0.35 6.69 86.45 0.58 0.93 16 26 C 0.05 1.76 5.04 86.38 0.44 2.19 16 27 C 0.14 6.26 6.69 86.35 0.58 6.83 16 28 H 0.25 14.46 8.31 -92.70 -0.77 13.69 16 29 H 0.06 3.25 6.12 -2.39 -0.01 3.24 16 30 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 31 H 0.09 2.80 8.11 -2.38 -0.02 2.78 16 32 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.05 1.01 8.08 -2.39 -0.02 0.99 16 35 H 0.06 1.54 6.18 -2.39 -0.01 1.52 16 36 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.42 3.99 8.47 -92.71 -0.79 3.21 16 38 H 0.12 0.70 8.14 -2.39 -0.02 0.69 16 39 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.05 1.11 8.10 -2.39 -0.02 1.09 16 41 H 0.05 1.02 6.75 -2.39 -0.02 1.00 16 42 H 0.05 0.45 7.81 -2.39 -0.02 0.43 16 43 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.07 1.20 7.66 -2.39 -0.02 1.18 16 45 H 0.05 0.63 8.00 -2.38 -0.02 0.61 16 46 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 48 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 49 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 50 H 0.05 0.47 7.57 -2.39 -0.02 0.45 16 51 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 52 H 0.03 0.92 8.14 -2.38 -0.02 0.90 16 53 H 0.09 2.83 5.73 -2.38 -0.01 2.82 16 54 H 0.06 2.47 7.95 -2.38 -0.02 2.45 16 55 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -73.65 419.63 -4.49 -78.14 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: 0.06 Total: 13.96 kcal Atomic # 6 Polarization: 11.52 SS G_CDS: 6.96 Total: 18.48 kcal Atomic # 7 Polarization: -125.97 SS G_CDS: -13.49 Total: -139.47 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: -0.05 Total: -18.38 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -73.65 -4.49 -78.14 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690080869.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.151 kcal (2) G-P(sol) polarization free energy of solvation -73.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds