Wall clock time and date at job start Tue Mar 31 2020 23:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 113.99909 * 2 1 4 4 H 1.09000 * 109.47132 * 29.99636 * 3 2 1 5 5 C 1.50699 * 109.47183 * 269.99818 * 3 2 1 6 6 O 1.21287 * 119.99948 * 355.50135 * 5 3 2 7 7 N 1.34780 * 120.00208 * 175.49634 * 5 3 2 8 8 C 1.46493 * 120.00130 * 184.52996 * 7 5 3 9 9 C 1.52999 * 109.47329 * 180.46970 * 8 7 5 10 10 H 1.09000 * 109.58656 * 297.43294 * 9 8 7 11 11 C 1.53192 * 109.59094 * 177.14430 * 9 8 7 12 12 C 1.53040 * 109.31594 * 185.44155 * 11 9 8 13 13 C 1.53035 * 109.52950 * 61.36735 * 12 11 9 14 14 C 1.53197 * 109.31309 * 298.62051 * 13 12 11 15 15 N 1.46918 * 108.76798 * 54.65538 * 14 13 12 16 16 C 1.36935 * 120.63260 * 126.36086 * 15 14 13 17 17 H 1.08002 * 119.99778 * 224.42235 * 16 15 14 18 18 C 1.38810 * 119.99782 * 44.42909 * 16 15 14 19 19 N 1.31617 * 119.99743 * 205.65596 * 18 16 15 20 20 Si 1.86801 * 120.00289 * 25.65907 * 18 16 15 21 21 H 1.48492 * 109.47324 * 95.09337 * 20 18 16 22 22 H 1.48502 * 109.46728 * 215.09586 * 20 18 16 23 23 H 1.48501 * 109.46748 * 335.09260 * 20 18 16 24 24 C 1.53002 * 109.46998 * 149.99836 * 3 2 1 25 25 C 1.53001 * 109.47143 * 54.57560 * 24 3 2 26 26 C 1.52996 * 109.46865 * 179.97438 * 25 24 3 27 27 C 1.52994 * 109.47200 * 59.99906 * 26 25 24 28 28 C 1.53002 * 109.47203 * 299.99449 * 27 26 25 29 29 C 1.52993 * 109.46911 * 294.57021 * 24 3 2 30 30 H 1.08997 * 109.47511 * 299.99652 * 1 2 3 31 31 H 1.09000 * 109.47412 * 60.00260 * 1 2 3 32 32 H 1.09004 * 109.46948 * 179.97438 * 1 2 3 33 33 H 0.97001 * 119.99562 * 4.52888 * 7 5 3 34 34 H 1.09006 * 109.47149 * 60.47079 * 8 7 5 35 35 H 1.09004 * 109.47448 * 300.47434 * 8 7 5 36 36 H 1.08998 * 109.49715 * 65.47960 * 11 9 8 37 37 H 1.09002 * 109.52292 * 305.40757 * 11 9 8 38 38 H 1.08990 * 109.45953 * 181.38661 * 12 11 9 39 39 H 1.09004 * 109.45220 * 301.35719 * 12 11 9 40 40 H 1.09000 * 109.50076 * 58.58222 * 13 12 11 41 41 H 1.08996 * 109.49991 * 178.68108 * 13 12 11 42 42 H 1.09004 * 109.59566 * 294.86455 * 14 13 12 43 43 H 1.09004 * 109.69967 * 174.50591 * 14 13 12 44 44 H 0.97002 * 119.99954 * 179.97438 * 19 18 16 45 45 H 1.09003 * 109.46379 * 174.57118 * 24 3 2 46 46 H 1.08998 * 109.46944 * 299.99817 * 25 24 3 47 47 H 1.09000 * 109.47171 * 59.99655 * 25 24 3 48 48 H 1.08998 * 109.47276 * 299.99718 * 26 25 24 49 49 H 1.09003 * 109.47016 * 179.97438 * 26 25 24 50 50 H 1.09000 * 109.47233 * 179.97438 * 27 26 25 51 51 H 1.08999 * 109.47680 * 59.99743 * 27 26 25 52 52 H 1.08998 * 109.47301 * 300.00205 * 28 27 26 53 53 H 1.09000 * 109.47086 * 180.02562 * 28 27 26 54 54 H 1.08994 * 109.47465 * 300.00076 * 29 24 3 55 55 H 1.09002 * 109.46999 * 60.00793 * 29 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2145 1.7644 -1.4208 6 8 1.9705 1.0136 -2.3416 7 7 2.6684 3.0091 -1.6683 8 6 2.7729 3.4897 -3.0482 9 6 3.3218 4.9179 -3.0506 10 1 2.6276 5.5770 -2.5294 11 6 3.4993 5.3975 -4.4947 12 6 4.1740 6.7711 -4.4926 13 6 5.5570 6.6608 -3.8468 14 6 5.4028 6.1959 -2.3952 15 7 4.6281 4.9477 -2.3785 16 6 5.1143 3.8331 -1.7489 17 1 5.0463 2.8684 -2.2297 18 6 5.6943 3.9432 -0.4926 19 7 6.5832 3.0562 -0.0982 20 14 5.2132 5.3499 0.6384 21 1 4.1440 4.8974 1.5641 22 1 6.3978 5.7812 1.4233 23 1 4.7156 6.4895 -0.1734 24 6 3.3589 1.2633 0.7213 25 6 4.2452 0.1918 0.0831 26 6 5.5941 0.1501 0.8040 27 6 5.3730 -0.1839 2.2806 28 6 4.4867 0.8876 2.9188 29 6 3.1373 0.9290 2.1977 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.9258 3.5866 -0.9327 34 1 1.7867 3.4787 -3.5125 35 1 3.4457 2.8409 -3.6090 36 1 2.5241 5.4717 -4.9759 37 1 4.1210 4.6877 -5.0404 38 1 4.2792 7.1256 -5.5179 39 1 3.5637 7.4744 -3.9260 40 1 6.1595 5.9389 -4.3981 41 1 6.0466 7.6344 -3.8666 42 1 4.8782 6.9593 -1.8206 43 1 6.3863 6.0214 -1.9588 44 1 6.9889 3.1333 0.7796 45 1 3.8460 2.2348 0.6378 46 1 3.7581 -0.7796 0.1665 47 1 4.4030 0.4300 -0.9688 48 1 6.0810 1.1217 0.7202 49 1 6.2254 -0.6135 0.3497 50 1 6.3340 -0.2141 2.7941 51 1 4.8861 -1.1555 2.3645 52 1 4.9737 1.8591 2.8350 53 1 4.3297 0.6498 3.9709 54 1 2.5059 1.6923 2.6523 55 1 2.6502 -0.0426 2.2811 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690461022.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:15 Heat of formation + Delta-G solvation = -95.377150 kcal Electronic energy + Delta-G solvation = -33496.323345 eV Core-core repulsion = 29532.369796 eV Total energy + Delta-G solvation = -3963.953549 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.35516 -39.79591 -38.93063 -37.88070 -35.67790 -34.74229 -33.22196 -32.50535 -31.94290 -31.49581 -28.51367 -27.69236 -26.92330 -25.60493 -24.01293 -23.50870 -22.76128 -22.23015 -21.24307 -20.76147 -20.43261 -18.66959 -17.94519 -17.69356 -17.18139 -16.93163 -16.47162 -16.35143 -15.65768 -15.43070 -15.27968 -15.18151 -14.95823 -14.89651 -14.80977 -14.65099 -14.43221 -14.26180 -13.98870 -13.74829 -13.50516 -13.12867 -13.04596 -12.93246 -12.78227 -12.72503 -12.62826 -12.29097 -12.23136 -12.02530 -11.89116 -11.80506 -11.60009 -11.50646 -11.39179 -11.23977 -11.14939 -11.11558 -11.02499 -10.83974 -10.33403 -10.12272 -9.78858 -8.40653 -7.99451 -5.40967 1.41999 1.54584 1.60118 1.69767 2.32784 2.58008 2.89129 3.14661 3.44769 3.72389 3.73557 3.88927 3.96219 4.00774 4.13578 4.15635 4.22762 4.35413 4.39014 4.48921 4.50406 4.50752 4.57426 4.58379 4.59921 4.71389 4.73813 4.74255 4.78946 4.81584 4.83251 4.83613 4.95562 5.04372 5.05818 5.11423 5.19996 5.21225 5.31023 5.33121 5.36057 5.37504 5.39223 5.44932 5.51965 5.54466 5.64621 5.70247 5.89073 6.09758 6.17077 6.46815 6.75810 7.14585 7.39381 7.77631 8.28754 9.15649 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011802 B = 0.005453 C = 0.004220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.923356 B = 5133.417989 C = 6632.952417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.371 6.371 3 C 0.085 3.915 4 H 0.104 0.896 5 C 0.486 3.514 6 O -0.588 6.588 7 N -0.687 5.687 8 C 0.142 3.858 9 C 0.158 3.842 10 H 0.050 0.950 11 C -0.123 4.123 12 C -0.102 4.102 13 C -0.132 4.132 14 C 0.138 3.862 15 N -0.609 5.609 16 C -0.247 4.247 17 H 0.031 0.969 18 C 0.024 3.976 19 N -0.902 5.902 20 Si 0.874 3.126 21 H -0.280 1.280 22 H -0.313 1.313 23 H -0.236 1.236 24 C -0.071 4.071 25 C -0.076 4.076 26 C -0.139 4.139 27 C -0.107 4.107 28 C -0.114 4.114 29 C -0.103 4.103 30 H 0.065 0.935 31 H 0.030 0.970 32 H 0.102 0.898 33 H 0.407 0.593 34 H 0.072 0.928 35 H 0.031 0.969 36 H 0.082 0.918 37 H 0.046 0.954 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.043 0.957 41 H 0.072 0.928 42 H 0.034 0.966 43 H 0.038 0.962 44 H 0.258 0.742 45 H 0.074 0.926 46 H 0.054 0.946 47 H 0.014 0.986 48 H 0.089 0.911 49 H 0.038 0.962 50 H 0.061 0.939 51 H 0.064 0.936 52 H 0.041 0.959 53 H 0.083 0.917 54 H 0.072 0.928 55 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.901 2.869 3.045 10.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.288 6.288 3 C 0.024 3.976 4 H 0.121 0.879 5 C 0.272 3.728 6 O -0.469 6.469 7 N -0.338 5.338 8 C 0.018 3.982 9 C 0.052 3.948 10 H 0.067 0.933 11 C -0.162 4.162 12 C -0.140 4.140 13 C -0.171 4.171 14 C 0.013 3.987 15 N -0.335 5.335 16 C -0.376 4.376 17 H 0.049 0.951 18 C -0.176 4.176 19 N -0.544 5.544 20 Si 0.702 3.298 21 H -0.207 1.207 22 H -0.241 1.241 23 H -0.160 1.160 24 C -0.090 4.090 25 C -0.113 4.113 26 C -0.177 4.177 27 C -0.145 4.145 28 C -0.152 4.152 29 C -0.140 4.140 30 H 0.083 0.917 31 H 0.049 0.951 32 H 0.121 0.879 33 H 0.244 0.756 34 H 0.090 0.910 35 H 0.050 0.950 36 H 0.101 0.899 37 H 0.065 0.935 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.062 0.938 41 H 0.091 0.909 42 H 0.051 0.949 43 H 0.057 0.943 44 H 0.068 0.932 45 H 0.092 0.908 46 H 0.073 0.927 47 H 0.033 0.967 48 H 0.107 0.893 49 H 0.056 0.944 50 H 0.080 0.920 51 H 0.083 0.917 52 H 0.060 0.940 53 H 0.102 0.898 54 H 0.091 0.909 55 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.882 2.117 2.515 10.414 hybrid contribution 0.544 0.762 0.613 1.119 sum -9.338 2.879 3.127 10.260 Atomic orbital electron populations 1.23021 0.79756 1.04107 1.00349 1.87962 1.21235 1.25247 1.94369 1.22119 0.97459 0.86798 0.91248 0.87880 1.21673 0.76789 0.81691 0.92637 1.90595 1.54277 1.54562 1.47492 1.45986 1.63191 1.14896 1.09709 1.21189 0.99089 0.94951 0.83014 1.20994 0.87082 0.93035 0.93674 0.93287 1.21882 1.01041 0.97439 0.95871 1.21345 0.95509 0.96277 1.00833 1.21962 0.97823 1.00417 0.96919 1.21411 0.94353 0.87730 0.95158 1.44411 1.16336 1.09597 1.63199 1.18228 1.35121 0.87380 0.96871 0.95097 1.25835 0.97097 0.97096 0.97576 1.69959 1.25997 1.38244 1.20159 0.86937 0.77743 0.84057 0.81103 1.20699 1.24147 1.15968 1.21189 0.91623 1.00261 0.95960 1.21021 0.95606 0.97813 0.96891 1.21801 0.96623 1.03636 0.95601 1.21445 0.99537 0.98739 0.94768 1.21494 0.95418 0.98557 0.99701 1.21521 0.97639 1.02585 0.92304 0.91652 0.95133 0.87947 0.75620 0.91000 0.95014 0.89938 0.93545 0.90785 0.91532 0.93791 0.90914 0.94864 0.94327 0.93202 0.90817 0.92705 0.96741 0.89270 0.94356 0.92050 0.91684 0.93973 0.89842 0.90898 0.90478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.59 10.81 113.37 1.23 1.81 16 2 O -0.37 -12.45 8.54 -129.98 -1.11 -13.56 16 3 C 0.09 2.93 2.20 29.85 0.07 2.99 16 4 H 0.10 2.90 7.79 -2.39 -0.02 2.88 16 5 C 0.49 19.86 6.14 87.66 0.54 20.40 16 6 O -0.59 -27.99 16.51 15.95 0.26 -27.73 16 7 N -0.69 -27.03 3.89 -463.06 -1.80 -28.83 16 8 C 0.14 5.35 4.49 86.38 0.39 5.74 16 9 C 0.16 5.44 3.03 44.97 0.14 5.58 16 10 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 11 C -0.12 -3.55 5.37 30.67 0.16 -3.38 16 12 C -0.10 -2.64 5.88 30.62 0.18 -2.46 16 13 C -0.13 -4.07 6.08 30.67 0.19 -3.88 16 14 C 0.14 5.25 4.46 86.37 0.38 5.63 16 15 N -0.61 -25.11 2.39 -675.21 -1.62 -26.72 16 16 C -0.25 -12.07 6.49 84.03 0.55 -11.53 16 17 H 0.03 1.83 6.84 -2.91 -0.02 1.81 16 18 C 0.02 1.18 4.43 84.86 0.38 1.56 16 19 N -0.90 -47.98 11.60 21.65 0.25 -47.73 16 20 Si 0.87 38.27 26.97 68.60 1.85 40.12 16 21 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 22 H -0.31 -14.70 7.11 99.48 0.71 -13.99 16 23 H -0.24 -9.61 4.75 99.48 0.47 -9.14 16 24 C -0.07 -2.59 1.99 -10.79 -0.02 -2.61 16 25 C -0.08 -3.10 4.82 30.59 0.15 -2.95 16 26 C -0.14 -5.51 5.92 30.59 0.18 -5.33 16 27 C -0.11 -3.35 5.92 30.59 0.18 -3.17 16 28 C -0.11 -3.34 5.93 30.61 0.18 -3.16 16 29 C -0.10 -3.00 5.11 30.61 0.16 -2.84 16 30 H 0.06 1.24 8.08 -2.39 -0.02 1.23 16 31 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.10 2.13 8.14 -2.38 -0.02 2.11 16 33 H 0.41 16.11 6.66 -92.71 -0.62 15.49 16 34 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 35 H 0.03 1.41 7.57 -2.38 -0.02 1.40 16 36 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.03 1.23 6.35 -2.38 -0.02 1.22 16 43 H 0.04 1.65 6.92 -2.39 -0.02 1.63 16 44 H 0.26 13.41 8.24 -92.71 -0.76 12.65 16 45 H 0.07 3.10 6.98 -2.39 -0.02 3.08 16 46 H 0.05 2.18 7.55 -2.39 -0.02 2.16 16 47 H 0.01 0.69 7.39 -2.39 -0.02 0.67 16 48 H 0.09 4.08 5.51 -2.39 -0.01 4.06 16 49 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 50 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 51 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 52 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 53 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 54 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 55 H 0.08 2.10 7.84 -2.39 -0.02 2.08 16 Total: -1.00 -61.85 401.94 2.86 -59.00 By element: Atomic # 1 Polarization: 43.06 SS G_CDS: 0.00 Total: 43.06 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: 5.02 Total: 2.39 kcal Atomic # 7 Polarization: -100.12 SS G_CDS: -3.17 Total: -103.28 kcal Atomic # 8 Polarization: -40.44 SS G_CDS: -0.85 Total: -41.28 kcal Atomic # 14 Polarization: 38.27 SS G_CDS: 1.85 Total: 40.12 kcal Total: -61.85 2.86 -59.00 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690461022.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.382 kcal (2) G-P(sol) polarization free energy of solvation -61.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds