Wall clock time and date at job start Tue Mar 31 2020 23:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 113.99920 * 2 1 4 4 H 1.09000 * 109.47287 * 2.80253 * 3 2 1 5 5 C 1.50706 * 109.46624 * 122.79945 * 3 2 1 6 6 O 1.21280 * 120.00154 * 3.99346 * 5 3 2 7 7 N 1.34775 * 119.99737 * 183.99509 * 5 3 2 8 8 C 1.46500 * 120.00078 * 184.17060 * 7 5 3 9 9 C 1.53005 * 109.46916 * 275.18551 * 8 7 5 10 10 H 1.09000 * 109.69961 * 59.84814 * 9 8 7 11 11 C 1.53187 * 109.58840 * 180.20890 * 9 8 7 12 12 C 1.53039 * 109.31593 * 174.42234 * 11 9 8 13 13 C 1.53041 * 109.53376 * 298.63672 * 12 11 9 14 14 C 1.53192 * 109.31554 * 61.36458 * 13 12 11 15 15 N 1.46924 * 109.58307 * 299.49935 * 9 8 7 16 16 C 1.36940 * 120.63596 * 6.58157 * 15 9 8 17 17 H 1.08004 * 119.99569 * 323.08555 * 16 15 9 18 18 C 1.38810 * 120.00253 * 143.08195 * 16 15 9 19 19 N 1.31625 * 119.99880 * 355.25921 * 18 16 15 20 20 Si 1.86794 * 120.00115 * 175.25777 * 18 16 15 21 21 H 1.48496 * 109.47164 * 94.98588 * 20 18 16 22 22 H 1.48498 * 109.47474 * 214.99260 * 20 18 16 23 23 H 1.48507 * 109.47171 * 334.98591 * 20 18 16 24 24 C 1.53000 * 109.47188 * 242.79620 * 3 2 1 25 25 C 1.53000 * 109.46645 * 65.95467 * 24 3 2 26 26 C 1.53007 * 109.46718 * 179.97438 * 25 24 3 27 27 C 1.53000 * 109.46801 * 60.00207 * 26 25 24 28 28 C 1.53000 * 109.47316 * 299.99427 * 27 26 25 29 29 C 1.52995 * 109.47395 * 305.95483 * 24 3 2 30 30 H 1.09001 * 109.47390 * 58.87758 * 1 2 3 31 31 H 1.09003 * 109.47213 * 178.87859 * 1 2 3 32 32 H 1.08996 * 109.47346 * 298.87752 * 1 2 3 33 33 H 0.97006 * 120.00404 * 4.16200 * 7 5 3 34 34 H 1.08998 * 109.47567 * 155.18484 * 8 7 5 35 35 H 1.09004 * 109.47409 * 35.18234 * 8 7 5 36 36 H 1.09008 * 109.49802 * 54.46703 * 11 9 8 37 37 H 1.09002 * 109.49573 * 294.37577 * 11 9 8 38 38 H 1.08997 * 109.46004 * 178.61473 * 12 11 9 39 39 H 1.08993 * 109.45838 * 58.65369 * 12 11 9 40 40 H 1.09004 * 109.49780 * 181.31720 * 13 12 11 41 41 H 1.09002 * 109.49858 * 301.40633 * 13 12 11 42 42 H 1.09002 * 109.58842 * 65.15165 * 14 13 12 43 43 H 1.09005 * 109.58434 * 185.43578 * 14 13 12 44 44 H 0.97000 * 119.99712 * 179.97438 * 19 18 16 45 45 H 1.09001 * 109.46843 * 185.94980 * 24 3 2 46 46 H 1.09001 * 109.47102 * 299.99354 * 25 24 3 47 47 H 1.08996 * 109.47078 * 60.00409 * 25 24 3 48 48 H 1.08996 * 109.47108 * 300.00397 * 26 25 24 49 49 H 1.09000 * 109.46877 * 179.97438 * 26 25 24 50 50 H 1.09003 * 109.47079 * 180.02562 * 27 26 25 51 51 H 1.09001 * 109.47760 * 59.99912 * 27 26 25 52 52 H 1.09001 * 109.47102 * 300.00888 * 28 27 26 53 53 H 1.08994 * 109.47579 * 179.97438 * 28 27 26 54 54 H 1.09004 * 109.46888 * 300.00008 * 29 24 3 55 55 H 1.08996 * 109.47019 * 59.99436 * 29 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.2203 2.0549 0.0502 5 6 2.9176 1.4512 1.1944 6 8 3.1099 0.5054 1.9289 7 7 3.5154 2.6326 1.4463 8 6 4.4681 2.7502 2.5529 9 6 3.7084 3.0194 3.8535 10 1 3.0191 2.1989 4.0529 11 6 4.7026 3.1481 5.0118 12 6 3.9507 3.5542 6.2814 13 6 3.2806 4.9132 6.0667 14 6 2.2703 4.8046 4.9204 15 7 2.9567 4.2761 3.7336 16 6 2.8972 4.9424 2.5387 17 1 3.7606 4.9663 1.8903 18 6 1.7273 5.5868 2.1608 19 7 0.6471 5.4799 2.9053 20 14 1.6859 6.6058 0.5959 21 1 1.1708 5.7752 -0.5221 22 1 0.7963 7.7786 0.7921 23 1 3.0579 7.0739 0.2735 24 6 2.8201 1.5031 -1.2829 25 6 1.8760 1.5029 -2.4870 26 6 2.6859 1.7012 -3.7699 27 6 3.6980 0.5631 -3.9151 28 6 4.6420 0.5634 -2.7111 29 6 3.8319 0.3647 -1.4279 30 1 -0.3634 0.5312 -0.8797 31 1 -0.3634 -1.0275 -0.0201 32 1 -0.3634 0.4963 0.8998 33 1 3.3149 3.4050 0.8948 34 1 5.1542 3.5739 2.3558 35 1 5.0321 1.8222 2.6471 36 1 5.4461 3.9078 4.7704 37 1 5.1989 2.1911 5.1732 38 1 4.6524 3.6225 7.1127 39 1 3.1909 2.8065 6.5083 40 1 2.7648 5.2127 6.9791 41 1 4.0374 5.6564 5.8155 42 1 1.4637 4.1297 5.2069 43 1 1.8608 5.7903 4.6995 44 1 -0.1703 5.9306 2.6415 45 1 3.3486 2.4553 -1.2358 46 1 1.3475 0.5507 -2.5341 47 1 1.1553 2.3140 -2.3837 48 1 3.2141 2.6534 -3.7225 49 1 2.0134 1.7006 -4.6278 50 1 4.2753 0.7046 -4.8289 51 1 3.1698 -0.3892 -3.9625 52 1 5.1703 1.5157 -2.6637 53 1 5.3628 -0.2477 -2.8143 54 1 4.5044 0.3649 -0.5701 55 1 3.3033 -0.5873 -1.4749 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690461023.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:20 Heat of formation + Delta-G solvation = -105.209061 kcal Electronic energy + Delta-G solvation = -32685.446491 eV Core-core repulsion = 28721.066598 eV Total energy + Delta-G solvation = -3964.379893 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.36914 -39.79795 -38.85300 -37.92020 -35.63504 -34.84758 -33.22930 -32.04014 -31.65118 -31.61224 -28.69671 -27.70036 -27.05726 -25.71682 -23.78718 -23.53807 -22.95212 -22.19644 -21.16236 -20.68863 -20.58355 -18.72143 -18.24340 -17.68591 -17.11428 -16.86171 -16.33226 -15.87997 -15.83672 -15.55895 -15.40622 -15.25232 -15.05818 -14.88359 -14.73044 -14.59107 -14.44488 -14.06078 -13.95368 -13.66813 -13.20688 -13.17584 -13.03316 -12.84322 -12.78580 -12.60002 -12.48621 -12.41033 -12.34131 -12.01775 -11.99025 -11.90385 -11.80914 -11.56125 -11.44391 -11.37528 -11.25826 -11.18003 -11.07649 -10.86082 -10.51209 -10.16983 -9.71220 -8.44285 -7.78243 -5.34983 1.46582 1.52439 1.58648 1.74022 2.18112 2.51944 3.00867 3.37778 3.61878 3.63191 3.65534 3.83165 3.98655 4.05861 4.12703 4.22427 4.25942 4.32526 4.37607 4.38901 4.41683 4.48719 4.51625 4.59368 4.62706 4.65952 4.68053 4.70395 4.74711 4.76347 4.79371 4.83838 4.96259 5.02565 5.11027 5.16361 5.19594 5.25081 5.27760 5.30727 5.32054 5.36850 5.38695 5.43746 5.45250 5.58353 5.61392 5.69358 5.72545 5.82901 6.03846 6.48654 6.76665 7.21282 7.41779 7.89452 8.52153 9.27399 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011552 B = 0.004340 C = 0.003783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.295262 B = 6449.516604 C = 7399.585216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.371 6.371 3 C 0.080 3.920 4 H 0.081 0.919 5 C 0.500 3.500 6 O -0.583 6.583 7 N -0.691 5.691 8 C 0.134 3.866 9 C 0.155 3.845 10 H -0.012 1.012 11 C -0.121 4.121 12 C -0.105 4.105 13 C -0.132 4.132 14 C 0.182 3.818 15 N -0.596 5.596 16 C -0.242 4.242 17 H 0.077 0.923 18 C -0.040 4.040 19 N -0.935 5.935 20 Si 0.944 3.056 21 H -0.274 1.274 22 H -0.305 1.305 23 H -0.260 1.260 24 C -0.084 4.084 25 C -0.112 4.112 26 C -0.115 4.115 27 C -0.115 4.115 28 C -0.115 4.115 29 C -0.101 4.101 30 H 0.062 0.938 31 H 0.107 0.893 32 H 0.024 0.976 33 H 0.409 0.591 34 H 0.094 0.906 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.038 0.962 40 H 0.060 0.940 41 H 0.057 0.943 42 H -0.022 1.022 43 H 0.052 0.948 44 H 0.246 0.754 45 H 0.085 0.915 46 H 0.068 0.932 47 H 0.061 0.939 48 H 0.064 0.936 49 H 0.075 0.925 50 H 0.075 0.925 51 H 0.060 0.940 52 H 0.064 0.936 53 H 0.067 0.933 54 H 0.038 0.962 55 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.020 -6.026 -10.830 13.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.289 6.289 3 C 0.019 3.981 4 H 0.099 0.901 5 C 0.287 3.713 6 O -0.463 6.463 7 N -0.343 5.343 8 C 0.010 3.990 9 C 0.048 3.952 10 H 0.006 0.994 11 C -0.161 4.161 12 C -0.143 4.143 13 C -0.171 4.171 14 C 0.056 3.944 15 N -0.320 5.320 16 C -0.373 4.373 17 H 0.094 0.906 18 C -0.236 4.236 19 N -0.580 5.580 20 Si 0.772 3.228 21 H -0.200 1.200 22 H -0.233 1.233 23 H -0.184 1.184 24 C -0.103 4.103 25 C -0.149 4.149 26 C -0.153 4.153 27 C -0.153 4.153 28 C -0.152 4.152 29 C -0.138 4.138 30 H 0.080 0.920 31 H 0.125 0.875 32 H 0.043 0.957 33 H 0.247 0.753 34 H 0.112 0.888 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.057 0.943 40 H 0.079 0.921 41 H 0.076 0.924 42 H -0.004 1.004 43 H 0.070 0.930 44 H 0.055 0.945 45 H 0.103 0.897 46 H 0.086 0.914 47 H 0.080 0.920 48 H 0.083 0.917 49 H 0.094 0.906 50 H 0.093 0.907 51 H 0.079 0.921 52 H 0.083 0.917 53 H 0.086 0.914 54 H 0.057 0.943 55 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.137 -6.797 -10.376 13.839 hybrid contribution -1.273 1.205 -0.205 1.765 sum 4.863 -5.592 -10.580 12.918 Atomic orbital electron populations 1.23063 0.79869 1.04122 1.00153 1.87923 1.20793 1.25525 1.94646 1.22082 0.95775 0.86751 0.93532 0.90111 1.21168 0.80970 0.82778 0.86435 1.90600 1.63863 1.40989 1.50874 1.46002 1.44099 1.11238 1.32934 1.21338 0.90729 1.01404 0.85534 1.20961 0.92321 0.87358 0.94578 0.99381 1.21886 0.97829 1.01212 0.95123 1.21352 0.98915 0.96391 0.97598 1.22033 0.99241 0.97443 0.98374 1.20493 0.91143 0.96984 0.85773 1.44165 1.59589 1.21464 1.06831 1.19300 0.94752 1.26562 0.96647 0.90584 1.25994 0.94981 1.02364 1.00261 1.70155 1.01399 1.46471 1.40009 0.85602 0.78095 0.78311 0.80799 1.19959 1.23279 1.18437 1.21465 0.96549 1.00146 0.92119 1.21571 0.97429 1.02183 0.93732 1.21520 0.98009 0.99062 0.96693 1.21522 0.97172 0.98766 0.97803 1.21536 0.97758 1.02109 0.93831 1.21362 0.96707 0.98059 0.97722 0.91969 0.87488 0.95703 0.75320 0.88812 0.90906 0.91170 0.91251 0.90454 0.94274 0.92121 0.92423 1.00352 0.92964 0.94488 0.89658 0.91376 0.92046 0.91732 0.90636 0.90660 0.92073 0.91739 0.91423 0.94341 0.92096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.66 10.70 113.37 1.21 1.87 16 2 O -0.37 -12.61 8.54 -129.97 -1.11 -13.72 16 3 C 0.08 2.70 2.33 29.85 0.07 2.77 16 4 H 0.08 2.80 7.60 -2.39 -0.02 2.78 16 5 C 0.50 20.20 6.17 87.66 0.54 20.75 16 6 O -0.58 -27.81 16.21 15.98 0.26 -27.55 16 7 N -0.69 -26.33 4.17 -463.05 -1.93 -28.26 16 8 C 0.13 4.97 4.73 86.38 0.41 5.38 16 9 C 0.15 6.56 3.15 44.97 0.14 6.70 16 10 H -0.01 -0.59 8.13 -2.39 -0.02 -0.61 16 11 C -0.12 -4.17 5.37 30.67 0.16 -4.00 16 12 C -0.10 -3.57 5.88 30.62 0.18 -3.38 16 13 C -0.13 -5.01 6.08 30.67 0.19 -4.82 16 14 C 0.18 8.85 5.21 86.36 0.45 9.30 16 15 N -0.60 -28.46 2.96 -675.21 -2.00 -30.46 16 16 C -0.24 -11.67 6.78 84.03 0.57 -11.10 16 17 H 0.08 3.38 5.69 -2.91 -0.02 3.36 16 18 C -0.04 -2.03 5.15 84.86 0.44 -1.60 16 19 N -0.93 -52.74 11.15 21.65 0.24 -52.50 16 20 Si 0.94 39.80 29.56 68.60 2.03 41.82 16 21 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 22 H -0.31 -13.70 7.11 99.48 0.71 -12.99 16 23 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 24 C -0.08 -2.23 1.99 -10.80 -0.02 -2.25 16 25 C -0.11 -2.44 5.11 30.60 0.16 -2.28 16 26 C -0.12 -2.03 5.92 30.60 0.18 -1.85 16 27 C -0.12 -1.94 5.92 30.59 0.18 -1.76 16 28 C -0.11 -2.28 5.93 30.61 0.18 -2.09 16 29 C -0.10 -2.64 4.82 30.61 0.15 -2.49 16 30 H 0.06 1.41 8.07 -2.39 -0.02 1.39 16 31 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 32 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.41 15.09 6.45 -92.70 -0.60 14.49 16 34 H 0.09 3.10 7.39 -2.39 -0.02 3.08 16 35 H 0.07 2.61 7.65 -2.39 -0.02 2.59 16 36 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 37 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 41 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 42 H -0.02 -1.18 8.14 -2.39 -0.02 -1.20 16 43 H 0.05 2.83 6.36 -2.38 -0.02 2.81 16 44 H 0.25 13.64 8.31 -92.71 -0.77 12.87 16 45 H 0.09 2.20 7.78 -2.39 -0.02 2.19 16 46 H 0.07 1.49 7.78 -2.39 -0.02 1.48 16 47 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 48 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 49 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 50 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 51 H 0.06 1.04 8.14 -2.39 -0.02 1.03 16 52 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 53 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 54 H 0.04 1.17 7.41 -2.38 -0.02 1.15 16 55 H 0.06 1.72 7.54 -2.39 -0.02 1.70 16 Total: -1.00 -65.89 411.58 2.92 -62.97 By element: Atomic # 1 Polarization: 38.32 SS G_CDS: 0.24 Total: 38.56 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: 5.19 Total: 9.13 kcal Atomic # 7 Polarization: -107.53 SS G_CDS: -3.69 Total: -111.22 kcal Atomic # 8 Polarization: -40.42 SS G_CDS: -0.85 Total: -41.27 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 2.03 Total: 41.82 kcal Total: -65.89 2.92 -62.97 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690461023.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.235 kcal (2) G-P(sol) polarization free energy of solvation -65.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds