Wall clock time and date at job start Tue Mar 31 2020 23:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42901 * 114.00205 * 2 1 4 4 H 1.09005 * 109.46907 * 16.53988 * 3 2 1 5 5 C 1.50696 * 109.47147 * 136.54092 * 3 2 1 6 6 O 1.21286 * 119.99998 * 6.64979 * 5 3 2 7 7 N 1.34782 * 120.00346 * 186.65553 * 5 3 2 8 8 C 1.46492 * 120.00508 * 175.24077 * 7 5 3 9 9 C 1.52993 * 109.47451 * 179.97438 * 8 7 5 10 10 H 1.08999 * 109.58484 * 299.14493 * 9 8 7 11 11 C 1.53197 * 109.59097 * 178.85775 * 9 8 7 12 12 C 1.53034 * 109.31438 * 185.43317 * 11 9 8 13 13 C 1.53041 * 109.53886 * 61.36838 * 12 11 9 14 14 C 1.53189 * 109.31055 * 298.63426 * 13 12 11 15 15 N 1.46926 * 108.77968 * 54.63647 * 14 13 12 16 16 C 1.36936 * 120.63793 * 126.38939 * 15 14 13 17 17 H 1.07992 * 119.99999 * 214.00910 * 16 15 14 18 18 C 1.38810 * 119.99359 * 34.00848 * 16 15 14 19 19 N 1.31613 * 120.00744 * 8.12879 * 18 16 15 20 20 Si 1.86803 * 119.99498 * 188.12816 * 18 16 15 21 21 H 1.48495 * 109.47363 * 60.00229 * 20 18 16 22 22 H 1.48506 * 109.47015 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47557 * 299.99849 * 20 18 16 24 24 C 1.52999 * 109.47446 * 256.54233 * 3 2 1 25 25 C 1.52998 * 109.47251 * 64.19136 * 24 3 2 26 26 C 1.52999 * 109.47251 * 179.97438 * 25 24 3 27 27 C 1.53000 * 109.46742 * 60.00150 * 26 25 24 28 28 C 1.53003 * 109.47163 * 299.99412 * 27 26 25 29 29 C 1.52999 * 109.46811 * 60.00631 * 28 27 26 30 30 H 1.09003 * 109.47296 * 305.50546 * 1 2 3 31 31 H 1.08996 * 109.47718 * 65.50623 * 1 2 3 32 32 H 1.09003 * 109.47225 * 185.50959 * 1 2 3 33 33 H 0.97005 * 119.99367 * 355.23814 * 7 5 3 34 34 H 1.09005 * 109.47078 * 59.99736 * 8 7 5 35 35 H 1.09007 * 109.47051 * 300.00253 * 8 7 5 36 36 H 1.09002 * 109.49796 * 305.38944 * 11 9 8 37 37 H 1.09001 * 109.49371 * 65.44900 * 11 9 8 38 38 H 1.08999 * 109.46343 * 181.38746 * 12 11 9 39 39 H 1.09004 * 109.46188 * 301.36017 * 12 11 9 40 40 H 1.09003 * 109.49844 * 58.58574 * 13 12 11 41 41 H 1.08996 * 109.49997 * 178.68340 * 13 12 11 42 42 H 1.09008 * 109.58739 * 174.42207 * 14 13 12 43 43 H 1.08996 * 109.58853 * 294.70248 * 14 13 12 44 44 H 0.97000 * 120.00527 * 179.97438 * 19 18 16 45 45 H 1.09002 * 109.47259 * 184.19112 * 24 3 2 46 46 H 1.09002 * 109.46969 * 300.00153 * 25 24 3 47 47 H 1.08998 * 109.47263 * 59.99853 * 25 24 3 48 48 H 1.08990 * 109.46966 * 299.99691 * 26 25 24 49 49 H 1.08999 * 109.46836 * 179.97438 * 26 25 24 50 50 H 1.09006 * 109.46874 * 180.02562 * 27 26 25 51 51 H 1.08997 * 109.47555 * 60.00356 * 27 26 25 52 52 H 1.08995 * 109.47000 * 300.00531 * 28 27 26 53 53 H 1.08998 * 109.47302 * 180.02562 * 28 27 26 54 54 H 1.08993 * 109.47454 * 179.97438 * 29 28 27 55 55 H 1.09002 * 109.47259 * 59.99802 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.2580 2.0381 0.2926 5 6 3.1566 1.3448 0.9773 6 8 3.5249 0.3254 1.5214 7 7 3.7727 2.5129 1.2467 8 6 4.8168 2.5709 2.2726 9 6 5.3485 4.0015 2.3790 10 1 5.7792 4.3032 1.4243 11 6 6.4207 4.0711 3.4711 12 6 6.8509 5.5268 3.6660 13 6 5.6485 6.3599 4.1158 14 6 4.5677 6.3163 3.0312 15 7 4.2518 4.9124 2.7344 16 6 2.9599 4.4614 2.7880 17 1 2.7532 3.4529 3.1141 18 6 1.9162 5.3007 2.4231 19 7 2.1724 6.4699 1.8756 20 14 0.1480 4.7706 2.7090 21 1 -0.0703 4.5364 4.1590 22 1 -0.7711 5.8367 2.2354 23 1 -0.1206 3.5173 1.9592 24 6 2.5243 1.6349 -1.4029 25 6 1.3457 1.6977 -2.3763 26 6 1.8598 2.0277 -3.7791 27 6 2.8381 0.9421 -4.2321 28 6 4.0169 0.8794 -3.2587 29 6 3.5028 0.5493 -1.8559 30 1 -0.3634 0.5969 0.8366 31 1 -0.3634 0.4260 -0.9351 32 1 -0.3634 -1.0229 0.0987 33 1 3.5247 3.3153 0.7612 34 1 5.6317 1.9001 2.0000 35 1 4.4004 2.2652 3.2325 36 1 6.0142 3.6836 4.4053 37 1 7.2822 3.4733 3.1736 38 1 7.6314 5.5763 4.4252 39 1 7.2341 5.9213 2.7249 40 1 5.2493 5.9509 5.0440 41 1 5.9607 7.3917 4.2770 42 1 3.6717 6.8250 3.3874 43 1 4.9337 6.8090 2.1305 44 1 1.4431 7.0562 1.6203 45 1 3.0336 2.5985 -1.3862 46 1 0.8364 0.7341 -2.3930 47 1 0.6489 2.4713 -2.0538 48 1 2.3686 2.9914 -3.7621 49 1 1.0201 2.0720 -4.4726 50 1 3.2047 1.1775 -5.2313 51 1 2.3292 -0.0216 -4.2492 52 1 4.5258 1.8431 -3.2418 53 1 4.7141 0.1063 -3.5817 54 1 4.3425 0.5042 -1.1625 55 1 2.9938 -0.4144 -1.8729 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690461024.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:24 Heat of formation + Delta-G solvation = -103.509441 kcal Electronic energy + Delta-G solvation = -32632.383199 eV Core-core repulsion = 28668.077007 eV Total energy + Delta-G solvation = -3964.306192 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.40837 -39.84610 -38.96655 -37.90772 -35.67577 -34.89131 -33.20315 -32.05194 -31.67712 -31.63074 -28.82976 -27.72213 -26.91996 -25.74018 -23.80890 -23.53804 -22.88709 -22.24224 -21.17171 -20.69217 -20.60357 -18.71887 -17.86603 -17.66988 -17.44230 -16.99861 -16.43886 -16.02160 -15.86362 -15.64963 -15.41937 -15.15251 -15.04332 -14.88103 -14.82300 -14.56727 -14.35997 -14.09800 -13.93672 -13.59926 -13.46673 -13.19122 -13.06337 -12.88116 -12.82020 -12.75573 -12.57687 -12.47899 -12.36802 -12.05644 -12.01537 -11.90321 -11.79270 -11.52431 -11.46836 -11.25411 -11.21847 -11.10218 -11.05404 -10.83124 -10.52044 -10.22750 -9.82804 -8.50155 -7.81831 -5.33333 1.37130 1.44690 1.48105 1.66663 2.07524 2.47457 3.02360 3.33007 3.57609 3.60563 3.63791 3.80805 3.97686 4.01658 4.05756 4.22548 4.27314 4.30066 4.36201 4.37186 4.43059 4.48268 4.49399 4.55760 4.57716 4.64578 4.65254 4.66369 4.73334 4.76383 4.77304 4.87241 5.00137 5.00644 5.14211 5.14810 5.22408 5.22741 5.29006 5.29274 5.29852 5.37151 5.38756 5.41674 5.47020 5.59049 5.62268 5.65215 5.74814 5.86217 6.03486 6.47009 6.72101 7.20929 7.33787 7.88355 8.43630 9.21726 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010892 B = 0.004365 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2570.024097 B = 6412.843402 C = 7242.867224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.373 6.373 3 C 0.080 3.920 4 H 0.081 0.919 5 C 0.505 3.495 6 O -0.581 6.581 7 N -0.690 5.690 8 C 0.141 3.859 9 C 0.161 3.839 10 H 0.033 0.967 11 C -0.122 4.122 12 C -0.102 4.102 13 C -0.136 4.136 14 C 0.179 3.821 15 N -0.600 5.600 16 C -0.237 4.237 17 H 0.055 0.945 18 C -0.028 4.028 19 N -0.922 5.922 20 Si 0.933 3.067 21 H -0.292 1.292 22 H -0.292 1.292 23 H -0.273 1.273 24 C -0.090 4.090 25 C -0.113 4.113 26 C -0.116 4.116 27 C -0.114 4.114 28 C -0.116 4.116 29 C -0.100 4.100 30 H 0.032 0.968 31 H 0.064 0.936 32 H 0.106 0.894 33 H 0.411 0.589 34 H 0.070 0.930 35 H 0.043 0.957 36 H 0.052 0.948 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.058 0.942 40 H 0.043 0.957 41 H 0.064 0.936 42 H 0.050 0.950 43 H 0.002 0.998 44 H 0.249 0.751 45 H 0.078 0.922 46 H 0.073 0.927 47 H 0.061 0.939 48 H 0.060 0.940 49 H 0.077 0.923 50 H 0.074 0.926 51 H 0.064 0.936 52 H 0.059 0.941 53 H 0.068 0.932 54 H 0.036 0.964 55 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.200 -6.616 -9.427 11.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.291 6.291 3 C 0.018 3.982 4 H 0.099 0.901 5 C 0.291 3.709 6 O -0.462 6.462 7 N -0.341 5.341 8 C 0.017 3.983 9 C 0.055 3.945 10 H 0.051 0.949 11 C -0.162 4.162 12 C -0.139 4.139 13 C -0.175 4.175 14 C 0.054 3.946 15 N -0.325 5.325 16 C -0.368 4.368 17 H 0.073 0.927 18 C -0.224 4.224 19 N -0.568 5.568 20 Si 0.763 3.237 21 H -0.219 1.219 22 H -0.218 1.218 23 H -0.199 1.199 24 C -0.109 4.109 25 C -0.151 4.151 26 C -0.153 4.153 27 C -0.152 4.152 28 C -0.153 4.153 29 C -0.138 4.138 30 H 0.051 0.949 31 H 0.083 0.917 32 H 0.124 0.876 33 H 0.249 0.751 34 H 0.088 0.912 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.076 0.924 40 H 0.062 0.938 41 H 0.082 0.918 42 H 0.069 0.931 43 H 0.020 0.980 44 H 0.059 0.941 45 H 0.096 0.904 46 H 0.091 0.909 47 H 0.080 0.920 48 H 0.078 0.922 49 H 0.095 0.905 50 H 0.093 0.907 51 H 0.082 0.918 52 H 0.078 0.922 53 H 0.087 0.913 54 H 0.055 0.945 55 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.440 -7.374 -9.093 11.959 hybrid contribution -1.593 0.708 0.519 1.818 sum 0.848 -6.667 -8.575 10.894 Atomic orbital electron populations 1.23187 0.79664 1.04084 1.00875 1.87939 1.20951 1.25339 1.94832 1.22047 0.94132 0.86712 0.95274 0.90118 1.20871 0.84131 0.83238 0.82643 1.90607 1.66590 1.34709 1.54289 1.45971 1.38442 1.10547 1.39149 1.21230 0.89595 0.96871 0.90566 1.20868 0.89349 0.88232 0.96012 0.94892 1.21897 0.98104 0.97533 0.98659 1.21337 0.96911 0.94552 1.01137 1.22068 0.97075 0.99414 0.98988 1.20572 0.95571 0.84999 0.93450 1.44203 1.02184 1.06205 1.79918 1.19084 0.83198 0.98217 1.36258 0.92705 1.25564 1.00078 0.97675 0.99126 1.70061 1.30930 1.10649 1.45144 0.85892 0.82731 0.77472 0.77638 1.21898 1.21811 1.19891 1.21526 0.98033 0.99675 0.91686 1.21637 0.96227 1.02146 0.95048 1.21513 0.99460 0.98952 0.95372 1.21518 0.95852 0.99145 0.98655 1.21528 0.98158 1.01716 0.93911 1.21355 0.97269 0.98297 0.96858 0.94896 0.91725 0.87570 0.75150 0.91195 0.93905 0.92956 0.90104 0.90836 0.92363 0.93775 0.91772 0.93129 0.98005 0.94132 0.90405 0.90874 0.92035 0.92169 0.90467 0.90698 0.91772 0.92195 0.91293 0.94467 0.91822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 10.44 113.37 1.18 1.64 16 2 O -0.37 -12.44 8.73 -130.03 -1.14 -13.58 16 3 C 0.08 2.71 2.37 29.85 0.07 2.78 16 4 H 0.08 2.82 7.59 -2.38 -0.02 2.81 16 5 C 0.51 20.22 6.10 87.65 0.53 20.75 16 6 O -0.58 -26.94 16.52 15.91 0.26 -26.68 16 7 N -0.69 -26.95 3.83 -463.07 -1.77 -28.72 16 8 C 0.14 5.38 4.45 86.38 0.38 5.77 16 9 C 0.16 6.05 3.01 44.97 0.14 6.19 16 10 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 11 C -0.12 -3.83 5.37 30.67 0.16 -3.67 16 12 C -0.10 -3.02 5.88 30.62 0.18 -2.84 16 13 C -0.14 -4.82 6.08 30.67 0.19 -4.64 16 14 C 0.18 8.02 5.23 86.36 0.45 8.47 16 15 N -0.60 -27.05 2.96 -675.23 -2.00 -29.05 16 16 C -0.24 -11.71 6.81 84.03 0.57 -11.14 16 17 H 0.06 2.84 6.01 -2.91 -0.02 2.82 16 18 C -0.03 -1.41 5.09 84.86 0.43 -0.98 16 19 N -0.92 -49.57 11.11 21.65 0.24 -49.33 16 20 Si 0.93 42.33 29.56 68.60 2.03 44.36 16 21 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 22 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 23 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 24 C -0.09 -2.52 2.01 -10.79 -0.02 -2.54 16 25 C -0.11 -2.58 4.43 30.59 0.14 -2.44 16 26 C -0.12 -2.20 5.92 30.59 0.18 -2.02 16 27 C -0.11 -2.05 5.92 30.60 0.18 -1.87 16 28 C -0.12 -2.47 5.92 30.60 0.18 -2.29 16 29 C -0.10 -2.74 4.82 30.60 0.15 -2.59 16 30 H 0.03 0.89 8.01 -2.39 -0.02 0.87 16 31 H 0.06 1.35 6.17 -2.39 -0.01 1.34 16 32 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.41 16.62 7.02 -92.70 -0.65 15.97 16 34 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 35 H 0.04 1.81 7.46 -2.38 -0.02 1.79 16 36 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.05 2.60 6.23 -2.38 -0.01 2.59 16 43 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 44 H 0.25 13.25 8.31 -92.71 -0.77 12.48 16 45 H 0.08 2.27 7.80 -2.39 -0.02 2.25 16 46 H 0.07 1.59 6.30 -2.39 -0.02 1.58 16 47 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 48 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 49 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 50 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 51 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 52 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 53 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 54 H 0.04 1.18 7.35 -2.39 -0.02 1.16 16 55 H 0.06 1.82 7.58 -2.39 -0.02 1.81 16 Total: -1.00 -61.09 408.14 2.92 -58.17 By element: Atomic # 1 Polarization: 36.07 SS G_CDS: 0.20 Total: 36.26 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: 5.10 Total: 8.57 kcal Atomic # 7 Polarization: -103.58 SS G_CDS: -3.53 Total: -107.11 kcal Atomic # 8 Polarization: -39.39 SS G_CDS: -0.87 Total: -40.26 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -61.09 2.92 -58.17 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690461024.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.337 kcal (2) G-P(sol) polarization free energy of solvation -61.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds