Wall clock time and date at job start Tue Mar 31 2020 22:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 114.00473 * 2 1 4 4 C 1.52996 * 109.47382 * 210.00094 * 3 2 1 5 5 C 1.52996 * 109.47064 * 299.99928 * 4 3 2 6 6 C 1.52998 * 109.47125 * 299.99988 * 5 4 3 7 7 C 1.53011 * 109.46990 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.46759 * 175.00298 * 7 6 5 9 9 O 1.21280 * 120.00428 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99718 * 179.97438 * 8 7 6 11 11 C 1.46925 * 120.63123 * 5.39341 * 10 8 7 12 12 C 1.53191 * 108.77230 * 233.58515 * 11 10 8 13 13 C 1.53039 * 109.31423 * 305.36189 * 12 11 10 14 14 C 1.53039 * 109.53619 * 61.36694 * 13 12 11 15 15 C 1.46925 * 120.63229 * 185.36557 * 10 8 7 16 16 H 1.08996 * 109.58906 * 246.34670 * 15 10 8 17 17 C 1.53008 * 109.58667 * 6.62743 * 15 10 8 18 18 N 1.46490 * 109.47285 * 178.20088 * 17 15 10 19 19 C 1.36940 * 120.00202 * 185.32508 * 18 17 15 20 20 H 1.07995 * 119.99504 * 359.72087 * 19 18 17 21 21 C 1.38809 * 119.99983 * 179.72778 * 19 18 17 22 22 N 1.31615 * 120.00596 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99752 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46819 * 59.99842 * 23 21 19 25 25 H 1.48505 * 109.47175 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47456 * 299.99894 * 23 21 19 27 27 C 1.52996 * 109.47140 * 60.00059 * 6 5 4 28 28 C 1.52996 * 109.47064 * 299.99979 * 27 6 5 29 29 H 1.09000 * 109.47107 * 299.99823 * 1 2 3 30 30 H 1.09002 * 109.46942 * 59.99436 * 1 2 3 31 31 H 1.08996 * 109.47448 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46754 * 330.00110 * 3 2 1 33 33 H 1.09001 * 109.46889 * 179.97438 * 4 3 2 34 34 H 1.09001 * 109.47347 * 60.00015 * 4 3 2 35 35 H 1.09004 * 109.46974 * 180.02562 * 5 4 3 36 36 H 1.09001 * 109.47541 * 60.00064 * 5 4 3 37 37 H 1.09000 * 109.47459 * 299.99829 * 6 5 4 38 38 H 1.08997 * 109.47046 * 54.99767 * 7 6 5 39 39 H 1.08996 * 109.46653 * 294.99892 * 7 6 5 40 40 H 1.08999 * 109.58450 * 353.37306 * 11 10 8 41 41 H 1.08997 * 109.59220 * 113.79690 * 11 10 8 42 42 H 1.08999 * 109.49806 * 65.31860 * 12 11 10 43 43 H 1.09010 * 109.49613 * 185.37985 * 12 11 10 44 44 H 1.09004 * 109.45828 * 181.39061 * 13 12 11 45 45 H 1.09001 * 109.46070 * 301.36001 * 13 12 11 46 46 H 1.09004 * 109.49361 * 178.68469 * 14 13 12 47 47 H 1.09001 * 109.49524 * 58.58751 * 14 13 12 48 48 H 1.09001 * 109.46582 * 58.19988 * 17 15 10 49 49 H 1.09001 * 109.46750 * 298.20294 * 17 15 10 50 50 H 0.97009 * 120.00085 * 5.04793 * 18 17 15 51 51 H 0.96997 * 120.00501 * 180.02562 * 22 21 19 52 52 H 1.09001 * 109.46889 * 60.00314 * 27 6 5 53 53 H 1.09001 * 109.47347 * 179.97438 * 27 6 5 54 54 H 1.08994 * 109.47193 * 299.99892 * 28 27 6 55 55 H 1.09004 * 109.46974 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.3590 1.2632 -0.7212 5 6 4.2927 0.2891 0.0000 6 6 4.5001 0.7550 1.4425 7 6 5.4345 -0.2188 2.1635 8 6 5.7368 0.3043 3.5441 9 8 5.2530 1.3530 3.9147 10 7 6.5447 -0.3931 4.3670 11 6 7.2317 -1.6025 3.8935 12 6 6.9157 -2.7558 4.8511 13 6 7.2817 -2.3432 6.2786 14 6 6.4451 -1.1299 6.6911 15 6 6.7558 0.0418 5.7544 16 1 7.7921 0.3529 5.8863 17 6 5.8243 1.2133 6.0721 18 7 6.0060 1.6170 7.4685 19 6 5.1982 2.5788 8.0140 20 1 4.4300 3.0429 7.4133 21 6 5.3668 2.9572 9.3388 22 7 6.3027 2.3914 10.0710 23 14 4.2651 4.2698 10.0826 24 1 2.8498 3.8254 10.0136 25 1 4.6458 4.4900 11.5010 26 1 4.4236 5.5369 9.3246 27 6 3.1515 0.7973 2.1637 28 6 2.2178 1.7713 1.4425 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.3450 1.9994 -0.5139 33 1 3.8021 2.2591 -0.7216 34 1 3.2112 0.9313 -1.7489 35 1 5.2537 0.2594 -0.5136 36 1 3.8494 -0.7066 0.0000 37 1 4.9436 1.7508 1.4425 38 1 6.3626 -0.3161 1.6004 39 1 4.9531 -1.1935 2.2417 40 1 6.8821 -1.8529 2.8920 41 1 8.3074 -1.4280 3.8742 42 1 5.8521 -2.9891 4.8011 43 1 7.4946 -3.6344 4.5660 44 1 7.0809 -3.1711 6.9587 45 1 8.3401 -2.0860 6.3222 46 1 6.6896 -0.8510 7.7161 47 1 5.3860 -1.3785 6.6239 48 1 4.7899 0.9081 5.9138 49 1 6.0598 2.0525 5.4176 50 1 6.6961 1.2001 8.0081 51 1 6.4202 2.6556 10.9968 52 1 2.7082 -0.1985 2.1637 53 1 3.2993 1.1287 3.1915 54 1 2.6611 2.7670 1.4425 55 1 1.2568 1.8010 1.9561 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690489489.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:51 Heat of formation + Delta-G solvation = -100.265247 kcal Electronic energy + Delta-G solvation = -31507.015326 eV Core-core repulsion = 27542.849813 eV Total energy + Delta-G solvation = -3964.165513 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.67312 -40.26224 -38.54261 -37.07846 -36.58053 -34.15131 -33.70005 -32.68793 -31.64138 -31.37218 -28.52406 -27.55184 -27.06687 -25.49988 -24.90667 -23.60796 -23.03716 -22.24844 -21.50491 -20.49343 -19.95816 -19.08511 -17.85849 -17.25624 -17.06338 -16.88282 -16.47170 -16.27130 -16.19240 -15.50263 -15.41515 -15.30378 -15.09004 -14.89475 -14.81566 -14.54561 -14.40068 -14.20257 -13.97228 -13.52066 -13.45029 -13.22319 -13.06660 -12.92947 -12.87116 -12.82746 -12.67319 -12.32632 -12.23451 -12.10769 -12.05369 -12.01248 -11.94756 -11.80658 -11.57842 -11.39479 -11.36653 -11.22823 -10.99942 -10.91547 -10.36636 -9.96317 -9.50485 -8.94785 -7.97433 -5.25268 1.41495 1.45902 1.52325 1.77148 2.04541 2.54828 2.92734 3.34855 3.56747 3.75589 3.80533 3.87076 3.90810 3.93450 4.03450 4.13918 4.15101 4.23705 4.24798 4.30340 4.40871 4.46007 4.49815 4.51228 4.59678 4.61837 4.64907 4.68041 4.71933 4.74083 4.83639 4.85636 4.86677 4.96827 4.98056 5.06852 5.09246 5.12851 5.17485 5.20308 5.23299 5.27642 5.32089 5.34826 5.39570 5.43862 5.48543 5.56104 5.66080 5.74092 6.25455 6.34316 6.59413 7.30941 7.37711 8.06689 8.33746 9.26043 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.009584 B = 0.003313 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2920.970645 B = 8449.348007 C =10588.442479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.394 6.394 3 C 0.090 3.910 4 C -0.114 4.114 5 C -0.101 4.101 6 C -0.066 4.066 7 C -0.123 4.123 8 C 0.495 3.505 9 O -0.565 6.565 10 N -0.609 5.609 11 C 0.101 3.899 12 C -0.128 4.128 13 C -0.115 4.115 14 C -0.118 4.118 15 C 0.149 3.851 16 H 0.064 0.936 17 C 0.177 3.823 18 N -0.745 5.745 19 C -0.244 4.244 20 H 0.060 0.940 21 C -0.072 4.072 22 N -0.967 5.967 23 Si 0.974 3.026 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.280 1.280 27 C -0.108 4.108 28 C -0.139 4.139 29 H 0.034 0.966 30 H 0.052 0.948 31 H 0.094 0.906 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.057 0.943 38 H 0.122 0.878 39 H 0.109 0.891 40 H 0.117 0.883 41 H 0.082 0.918 42 H 0.060 0.940 43 H 0.108 0.892 44 H 0.072 0.928 45 H 0.070 0.930 46 H 0.052 0.948 47 H 0.044 0.956 48 H 0.003 0.997 49 H 0.028 0.972 50 H 0.372 0.628 51 H 0.253 0.747 52 H 0.056 0.944 53 H 0.041 0.959 54 H 0.064 0.936 55 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.413 -13.144 -26.331 29.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.314 6.314 3 C 0.033 3.967 4 C -0.152 4.152 5 C -0.138 4.138 6 C -0.085 4.085 7 C -0.163 4.163 8 C 0.285 3.715 9 O -0.444 6.444 10 N -0.344 5.344 11 C -0.020 4.020 12 C -0.166 4.166 13 C -0.153 4.153 14 C -0.156 4.156 15 C 0.045 3.955 16 H 0.082 0.918 17 C 0.051 3.949 18 N -0.390 5.390 19 C -0.376 4.376 20 H 0.078 0.922 21 C -0.264 4.264 22 N -0.618 5.618 23 Si 0.802 3.198 24 H -0.206 1.206 25 H -0.212 1.212 26 H -0.206 1.206 27 C -0.145 4.145 28 C -0.177 4.177 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.112 0.888 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.140 0.860 39 H 0.127 0.873 40 H 0.135 0.865 41 H 0.100 0.900 42 H 0.079 0.921 43 H 0.126 0.874 44 H 0.091 0.909 45 H 0.089 0.911 46 H 0.071 0.929 47 H 0.063 0.937 48 H 0.021 0.979 49 H 0.045 0.955 50 H 0.205 0.795 51 H 0.062 0.938 52 H 0.075 0.925 53 H 0.059 0.941 54 H 0.083 0.917 55 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.688 -12.651 -26.176 29.196 hybrid contribution -0.747 1.220 1.595 2.143 sum -3.435 -11.431 -24.580 27.325 Atomic orbital electron populations 1.22898 0.80641 1.03420 1.00177 1.87881 1.20265 1.28188 1.95037 1.22169 0.95678 0.84481 0.94416 1.21644 0.93333 1.00801 0.99388 1.21436 0.99888 0.99508 0.92965 1.20862 0.94170 0.98315 0.95135 1.21814 1.02662 1.01055 0.90731 1.21601 0.77529 0.83956 0.88393 1.90774 1.52486 1.24770 1.76343 1.48344 1.47169 1.28310 1.10530 1.22107 0.97772 0.82632 0.99456 1.21919 1.02381 0.98491 0.93833 1.21532 0.99585 0.96308 0.97837 1.21784 0.99926 0.95569 0.98343 1.21164 0.98342 0.94056 0.81923 0.91809 1.21103 0.95234 0.94707 0.83827 1.42729 1.40768 1.46201 1.09341 1.19456 1.10693 1.12970 0.94479 0.92191 1.25521 1.01047 1.02946 0.96909 1.69791 1.36615 1.47226 1.08174 0.85218 0.78366 0.79073 0.77151 1.20637 1.21192 1.20632 1.21450 0.95297 0.99132 0.98670 1.21979 0.99360 0.99376 0.96970 0.94703 0.92935 0.88774 0.91367 0.90316 0.90043 0.90029 0.91165 0.92485 0.85986 0.87286 0.86502 0.89962 0.92138 0.87404 0.90906 0.91092 0.92884 0.93684 0.97942 0.95455 0.79490 0.93808 0.92488 0.94059 0.91700 0.93037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 10.82 113.37 1.23 1.60 16 2 O -0.39 -7.71 9.00 -148.98 -1.34 -9.06 16 3 C 0.09 1.64 2.92 30.59 0.09 1.73 16 4 C -0.11 -1.73 5.66 30.59 0.17 -1.56 16 5 C -0.10 -1.55 5.06 30.59 0.15 -1.40 16 6 C -0.07 -1.42 1.84 -10.79 -0.02 -1.44 16 7 C -0.12 -2.38 3.53 29.85 0.11 -2.27 16 8 C 0.49 15.07 7.25 87.66 0.64 15.70 16 9 O -0.57 -23.26 9.52 -3.03 -0.03 -23.29 16 10 N -0.61 -17.19 2.97 -795.04 -2.36 -19.55 16 11 C 0.10 1.70 6.35 86.36 0.55 2.25 16 12 C -0.13 -2.10 6.08 30.67 0.19 -1.91 16 13 C -0.12 -2.63 5.88 30.62 0.18 -2.45 16 14 C -0.12 -4.02 5.10 30.67 0.16 -3.86 16 15 C 0.15 5.51 3.06 44.98 0.14 5.65 16 16 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 17 C 0.18 8.71 4.14 86.38 0.36 9.06 16 18 N -0.75 -42.76 5.27 -343.46 -1.81 -44.57 16 19 C -0.24 -15.28 9.99 84.03 0.84 -14.44 16 20 H 0.06 3.77 7.83 -2.91 -0.02 3.75 16 21 C -0.07 -4.45 5.50 84.86 0.47 -3.98 16 22 N -0.97 -61.99 13.06 21.65 0.28 -61.71 16 23 Si 0.97 49.49 29.55 68.60 2.03 51.52 16 24 H -0.28 -13.82 7.11 99.48 0.71 -13.11 16 25 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 26 H -0.28 -13.85 7.11 99.48 0.71 -13.14 16 27 C -0.11 -2.89 4.80 30.59 0.15 -2.75 16 28 C -0.14 -3.27 5.63 30.59 0.17 -3.10 16 29 H 0.03 0.55 7.87 -2.39 -0.02 0.53 16 30 H 0.05 0.61 8.08 -2.39 -0.02 0.59 16 31 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.07 1.06 7.79 -2.38 -0.02 1.04 16 33 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.08 0.93 8.14 -2.38 -0.02 0.92 16 36 H 0.07 1.13 7.68 -2.39 -0.02 1.11 16 37 H 0.06 1.46 7.95 -2.39 -0.02 1.44 16 38 H 0.12 1.55 7.72 -2.39 -0.02 1.53 16 39 H 0.11 1.73 7.91 -2.39 -0.02 1.71 16 40 H 0.12 1.19 5.93 -2.39 -0.01 1.18 16 41 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.11 1.07 8.14 -2.38 -0.02 1.05 16 44 H 0.07 1.53 8.14 -2.38 -0.02 1.52 16 45 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 46 H 0.05 2.12 7.09 -2.38 -0.02 2.11 16 47 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 48 H 0.00 0.14 7.24 -2.39 -0.02 0.12 16 49 H 0.03 1.49 6.24 -2.39 -0.01 1.48 16 50 H 0.37 21.80 6.67 -92.70 -0.62 21.18 16 51 H 0.25 15.58 8.31 -92.71 -0.77 14.81 16 52 H 0.06 1.51 7.68 -2.39 -0.02 1.49 16 53 H 0.04 1.47 5.95 -2.39 -0.01 1.45 16 54 H 0.06 1.57 8.14 -2.39 -0.02 1.56 16 55 H 0.05 1.25 7.87 -2.38 -0.02 1.23 16 Total: -1.00 -79.32 407.81 2.55 -76.77 By element: Atomic # 1 Polarization: 32.82 SS G_CDS: 0.23 Total: 33.05 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: 5.56 Total: -3.16 kcal Atomic # 7 Polarization: -121.94 SS G_CDS: -3.89 Total: -125.83 kcal Atomic # 8 Polarization: -30.98 SS G_CDS: -1.37 Total: -32.35 kcal Atomic # 14 Polarization: 49.49 SS G_CDS: 2.03 Total: 51.52 kcal Total: -79.32 2.55 -76.77 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690489489.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.495 kcal (2) G-P(sol) polarization free energy of solvation -79.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds