Wall clock time and date at job start Tue Mar 31 2020 22:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36933 * 120.00100 * 2 1 4 4 H 1.08000 * 120.00150 * 202.00259 * 3 2 1 5 5 C 1.38819 * 119.99739 * 22.01200 * 3 2 1 6 6 N 1.31617 * 120.00070 * 12.68810 * 5 3 2 7 7 Si 1.86803 * 119.99552 * 192.68744 * 5 3 2 8 8 H 1.48497 * 109.47104 * 59.99955 * 7 5 3 9 9 H 1.48507 * 109.46865 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47192 * 299.99742 * 7 5 3 11 11 C 1.46497 * 119.99757 * 180.02562 * 2 1 3 12 12 H 1.09002 * 109.50014 * 179.97438 * 11 2 1 13 13 C 1.53038 * 109.50016 * 299.99966 * 11 2 1 14 14 C 1.53034 * 109.54186 * 181.34941 * 13 11 2 15 15 C 1.53192 * 109.31633 * 298.63556 * 14 13 11 16 16 N 1.46931 * 108.77533 * 54.62982 * 15 14 13 17 17 C 1.34773 * 120.62854 * 126.37028 * 16 15 14 18 18 O 1.21290 * 119.99854 * 180.02562 * 17 16 15 19 19 C 1.50698 * 120.00190 * 0.02562 * 17 16 15 20 20 C 1.52999 * 109.46945 * 179.97438 * 19 17 16 21 21 C 1.53003 * 109.46770 * 180.02562 * 20 19 17 22 22 C 1.53010 * 109.46845 * 180.02562 * 21 20 19 23 23 C 1.53176 * 109.54243 * 294.82080 * 22 21 20 24 24 C 1.53097 * 109.15581 * 183.24200 * 23 22 21 25 25 O 1.42899 * 109.48737 * 57.47499 * 24 23 22 26 26 C 1.42901 * 114.10392 * 298.89071 * 25 24 23 27 27 C 1.53093 * 109.41377 * 61.15283 * 26 25 24 28 28 C 1.46931 * 118.73981 * 306.65100 * 16 15 14 29 29 H 1.09000 * 109.47052 * 274.32121 * 1 2 3 30 30 H 1.09000 * 109.47215 * 34.31783 * 1 2 3 31 31 H 1.09003 * 109.47293 * 154.31743 * 1 2 3 32 32 H 0.97002 * 120.00004 * 180.02562 * 6 5 3 33 33 H 1.09008 * 109.46212 * 61.32646 * 13 11 2 34 34 H 1.09002 * 109.44997 * 301.36432 * 13 11 2 35 35 H 1.09002 * 109.50029 * 178.68213 * 14 13 11 36 36 H 1.09000 * 109.49943 * 58.58700 * 14 13 11 37 37 H 1.08999 * 109.58561 * 294.85053 * 15 14 13 38 38 H 1.08997 * 109.59300 * 174.41765 * 15 14 13 39 39 H 1.08996 * 109.47167 * 60.00051 * 19 17 16 40 40 H 1.08996 * 109.46994 * 299.99801 * 19 17 16 41 41 H 1.09006 * 109.47269 * 60.00561 * 20 19 17 42 42 H 1.08994 * 109.47662 * 300.00365 * 20 19 17 43 43 H 1.08996 * 109.47262 * 60.00442 * 21 20 19 44 44 H 1.08999 * 109.47529 * 299.99861 * 21 20 19 45 45 H 1.08996 * 109.54414 * 55.00148 * 22 21 20 46 46 H 1.09002 * 109.52289 * 303.06287 * 23 22 21 47 47 H 1.09004 * 109.52060 * 63.25295 * 23 22 21 48 48 H 1.08998 * 109.40896 * 297.49917 * 24 23 22 49 49 H 1.09003 * 109.49270 * 177.51495 * 24 23 22 50 50 H 1.08999 * 109.47756 * 301.17832 * 26 25 24 51 51 H 1.08994 * 109.49661 * 181.14558 * 26 25 24 52 52 H 1.08998 * 109.52286 * 182.48900 * 27 26 25 53 53 H 1.08999 * 109.57468 * 62.33066 * 27 26 25 54 54 H 1.08997 * 109.58628 * 173.14189 * 28 16 15 55 55 H 1.09001 * 109.58415 * 293.56644 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1707 1.2199 -0.3504 5 6 1.5315 2.3442 0.4506 6 7 0.3918 2.2702 1.1047 7 14 2.3173 4.0081 0.1286 8 1 2.4493 4.2181 -1.3356 9 1 1.4652 5.0781 0.7068 10 1 3.6616 4.0508 0.7580 11 6 2.1975 -1.2687 -0.0006 12 1 3.2692 -1.0701 -0.0009 13 6 1.8282 -2.0723 1.2484 14 6 2.6180 -3.3830 1.2659 15 6 2.2509 -4.2124 0.0313 16 7 2.4665 -3.3938 -1.1696 17 6 3.2382 -3.8446 -2.1784 18 8 3.4089 -3.1591 -3.1644 19 6 3.8890 -5.2003 -2.0814 20 6 4.7027 -5.4672 -3.3493 21 6 5.3629 -6.8440 -3.2511 22 6 6.1772 -7.1107 -4.5188 23 6 5.2351 -7.2032 -5.7229 24 6 6.0492 -7.5502 -6.9723 25 8 6.7531 -8.7751 -6.7575 26 6 7.6836 -8.7312 -5.6739 27 6 6.9350 -8.4338 -4.3720 28 6 1.8300 -2.0717 -1.2471 29 1 -0.3633 0.0774 1.0247 30 1 -0.3634 0.8488 -0.5794 31 1 -0.3634 -0.9262 -0.4454 32 1 -0.0404 3.0796 1.4192 33 1 0.7605 -2.2919 1.2365 34 1 2.0694 -1.4911 2.1384 35 1 2.3720 -3.9441 2.1674 36 1 3.6858 -3.1645 1.2529 37 1 1.2034 -4.5084 0.0884 38 1 2.8818 -5.1001 -0.0135 39 1 3.1202 -5.9657 -1.9758 40 1 4.5485 -5.2255 -1.2140 41 1 5.4717 -4.7019 -3.4554 42 1 4.0430 -5.4421 -4.2166 43 1 4.5938 -7.6091 -3.1453 44 1 6.0227 -6.8696 -2.3838 45 1 6.8878 -6.2987 -4.6732 46 1 4.4927 -7.9814 -5.5457 47 1 4.7336 -6.2462 -5.8675 48 1 6.7629 -6.7512 -7.1729 49 1 5.3784 -7.6609 -7.8243 50 1 8.4187 -7.9475 -5.8575 51 1 8.1904 -9.6925 -5.5904 52 1 7.6481 -8.3562 -3.5514 53 1 6.2281 -9.2374 -4.1655 54 1 2.1833 -1.5476 -2.1351 55 1 0.7475 -2.1898 -1.2964 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690811371.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:48 Heat of formation + Delta-G solvation = -104.065836 kcal Electronic energy + Delta-G solvation = -30107.015633 eV Core-core repulsion = 26142.685314 eV Total energy + Delta-G solvation = -3964.330319 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.25780 -40.35452 -38.98524 -36.84838 -36.71199 -34.10934 -33.46371 -32.85644 -31.98150 -30.66411 -28.88150 -28.07979 -26.39507 -25.43633 -24.65963 -24.24771 -23.02879 -22.15861 -20.96865 -20.82687 -19.75655 -18.79064 -18.07296 -17.18851 -17.09476 -16.95925 -16.77283 -16.58457 -15.94495 -15.71764 -15.57663 -15.42857 -15.21441 -14.86668 -14.70568 -14.61684 -14.45521 -13.92693 -13.85234 -13.67265 -13.63302 -13.23828 -12.89159 -12.86305 -12.74003 -12.64275 -12.54898 -12.38748 -12.30596 -12.19736 -12.12428 -11.95291 -11.81167 -11.79169 -11.64331 -11.57361 -11.39139 -11.14926 -11.12013 -10.78623 -10.65814 -10.38371 -9.67595 -8.78457 -7.86112 -5.33859 1.42100 1.45222 1.51625 1.68584 2.04097 2.48662 2.99392 3.26436 3.53018 3.61531 3.76002 3.80150 3.92664 3.98473 4.09103 4.11027 4.13941 4.18722 4.23134 4.26981 4.34366 4.36859 4.51792 4.53180 4.60060 4.67326 4.71941 4.74836 4.76704 4.78788 4.80221 4.86317 4.89439 4.91694 4.97735 5.02734 5.06417 5.12154 5.15577 5.17470 5.22164 5.26709 5.32885 5.43629 5.47456 5.48932 5.53613 5.57189 5.61962 5.69805 6.28668 6.29395 6.52911 7.11635 7.24449 7.83580 8.25864 9.16300 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.019522 B = 0.001951 C = 0.001853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.947479 B =14345.507774 C =15103.187020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.611 5.611 3 C -0.267 4.267 4 H 0.061 0.939 5 C -0.050 4.050 6 N -0.934 5.934 7 Si 0.967 3.033 8 H -0.283 1.283 9 H -0.289 1.289 10 H -0.275 1.275 11 C 0.168 3.832 12 H 0.042 0.958 13 C -0.123 4.123 14 C -0.123 4.123 15 C 0.105 3.895 16 N -0.609 5.609 17 C 0.500 3.500 18 O -0.598 6.598 19 C -0.127 4.127 20 C -0.102 4.102 21 C -0.102 4.102 22 C -0.092 4.092 23 C -0.151 4.151 24 C 0.056 3.944 25 O -0.406 6.406 26 C 0.052 3.948 27 C -0.145 4.145 28 C 0.112 3.888 29 H 0.008 0.992 30 H 0.013 0.987 31 H 0.029 0.971 32 H 0.249 0.751 33 H 0.057 0.943 34 H 0.040 0.960 35 H 0.103 0.897 36 H 0.062 0.938 37 H 0.082 0.918 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.119 0.881 41 H 0.047 0.953 42 H 0.054 0.946 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.064 0.936 46 H 0.071 0.929 47 H 0.070 0.930 48 H 0.050 0.950 49 H 0.098 0.902 50 H 0.051 0.949 51 H 0.104 0.896 52 H 0.088 0.912 53 H 0.072 0.928 54 H 0.051 0.949 55 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.530 -27.240 -5.961 29.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.334 5.334 3 C -0.397 4.397 4 H 0.079 0.921 5 C -0.245 4.245 6 N -0.581 5.581 7 Si 0.795 3.205 8 H -0.209 1.209 9 H -0.215 1.215 10 H -0.201 1.201 11 C 0.060 3.940 12 H 0.060 0.940 13 C -0.163 4.163 14 C -0.162 4.162 15 C -0.016 4.016 16 N -0.342 5.342 17 C 0.291 3.709 18 O -0.479 6.479 19 C -0.167 4.167 20 C -0.140 4.140 21 C -0.140 4.140 22 C -0.110 4.110 23 C -0.189 4.189 24 C -0.021 4.021 25 O -0.326 6.326 26 C -0.024 4.024 27 C -0.183 4.183 28 C -0.013 4.013 29 H 0.026 0.974 30 H 0.032 0.968 31 H 0.047 0.953 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.059 0.941 35 H 0.122 0.878 36 H 0.081 0.919 37 H 0.100 0.900 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.137 0.863 41 H 0.066 0.934 42 H 0.073 0.927 43 H 0.094 0.906 44 H 0.097 0.903 45 H 0.082 0.918 46 H 0.089 0.911 47 H 0.089 0.911 48 H 0.068 0.932 49 H 0.116 0.884 50 H 0.069 0.931 51 H 0.122 0.878 52 H 0.106 0.894 53 H 0.091 0.909 54 H 0.070 0.930 55 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 10.475 -26.911 -6.510 29.602 hybrid contribution -0.022 2.200 -0.007 2.201 sum 10.453 -24.710 -6.517 27.610 Atomic orbital electron populations 1.20482 0.82542 0.95666 0.97639 1.44091 1.02159 1.01032 1.86093 1.19431 0.97715 0.86842 1.35682 0.92135 1.25717 0.98567 1.01576 0.98653 1.70209 1.19626 1.27532 1.40690 0.85347 0.77788 0.79647 0.77695 1.20939 1.21526 1.20111 1.20623 0.94684 0.85344 0.93374 0.93970 1.21941 1.00247 0.96535 0.97573 1.21901 1.00038 0.95147 0.99115 1.22090 1.03425 0.93904 0.82180 1.48347 1.48855 1.17550 1.19398 1.21713 0.77805 0.89887 0.81522 1.90674 1.63229 1.60673 1.33322 1.21771 1.01257 0.91981 1.01649 1.21338 0.98702 0.97499 0.96487 1.21563 0.99402 0.95567 0.97427 1.21217 0.97136 0.97595 0.95091 1.22268 0.98826 1.02360 0.95404 1.22667 0.95108 0.86320 0.97976 1.87891 1.56670 1.35581 1.52418 1.22757 0.90846 1.02865 0.85943 1.22208 1.00352 0.97360 0.98347 1.21757 0.96909 0.83514 0.99105 0.97359 0.96847 0.95262 0.94142 0.92433 0.94104 0.87830 0.91916 0.89956 0.85760 0.86019 0.86346 0.93444 0.92726 0.90561 0.90260 0.91776 0.91071 0.91101 0.93207 0.88429 0.93064 0.87771 0.89388 0.90948 0.92987 0.91963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.12 8.03 127.77 1.03 10.15 16 2 N -0.61 -31.52 2.82 -703.14 -1.98 -33.50 16 3 C -0.27 -15.29 9.60 84.04 0.81 -14.48 16 4 H 0.06 3.46 7.81 -2.91 -0.02 3.44 16 5 C -0.05 -2.87 5.10 84.86 0.43 -2.44 16 6 N -0.93 -55.96 10.64 21.65 0.23 -55.73 16 7 Si 0.97 46.57 29.57 68.60 2.03 48.60 16 8 H -0.28 -13.47 7.11 99.48 0.71 -12.77 16 9 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 10 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 11 C 0.17 6.97 2.72 44.93 0.12 7.09 16 12 H 0.04 1.90 7.86 -2.39 -0.02 1.88 16 13 C -0.12 -4.16 5.15 30.62 0.16 -4.00 16 14 C -0.12 -2.68 6.08 30.67 0.19 -2.49 16 15 C 0.11 1.91 6.34 86.36 0.55 2.45 16 16 N -0.61 -17.07 2.98 -819.70 -2.44 -19.52 16 17 C 0.50 14.23 7.70 87.66 0.67 14.91 16 18 O -0.60 -23.37 15.40 -3.06 -0.05 -23.41 16 19 C -0.13 -2.03 4.05 29.85 0.12 -1.91 16 20 C -0.10 -1.78 4.26 30.59 0.13 -1.65 16 21 C -0.10 -1.14 4.69 30.60 0.14 -1.00 16 22 C -0.09 -1.17 2.27 -10.67 -0.02 -1.19 16 23 C -0.15 -2.18 5.10 30.69 0.16 -2.02 16 24 C 0.06 0.84 6.84 72.01 0.49 1.33 16 25 O -0.41 -7.14 10.77 -148.98 -1.60 -8.74 16 26 C 0.05 0.64 6.84 72.01 0.49 1.13 16 27 C -0.15 -1.51 5.43 30.69 0.17 -1.34 16 28 C 0.11 4.21 5.77 86.22 0.50 4.71 16 29 H 0.01 0.44 7.41 -2.39 -0.02 0.42 16 30 H 0.01 0.71 7.21 -2.39 -0.02 0.70 16 31 H 0.03 1.25 6.35 -2.39 -0.02 1.23 16 32 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 33 H 0.06 1.92 7.72 -2.38 -0.02 1.91 16 34 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.12 1.22 5.93 -2.39 -0.01 1.21 16 39 H 0.12 1.24 7.94 -2.39 -0.02 1.23 16 40 H 0.12 1.32 7.69 -2.39 -0.02 1.30 16 41 H 0.05 1.03 8.10 -2.38 -0.02 1.01 16 42 H 0.05 1.14 6.61 -2.39 -0.02 1.12 16 43 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.07 1.14 6.74 -2.38 -0.02 1.12 16 48 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 49 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 50 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 51 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 52 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 53 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 54 H 0.05 2.32 7.01 -2.39 -0.02 2.31 16 55 H 0.06 2.30 6.48 -2.39 -0.02 2.29 16 Total: -1.00 -75.22 412.64 3.15 -72.07 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: 0.83 Total: 11.00 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: 6.13 Total: 9.24 kcal Atomic # 7 Polarization: -104.56 SS G_CDS: -4.19 Total: -108.75 kcal Atomic # 8 Polarization: -30.51 SS G_CDS: -1.65 Total: -32.16 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -75.22 3.15 -72.07 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690811371.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.000 kcal (2) G-P(sol) polarization free energy of solvation -75.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds