Wall clock time and date at job start Tue Mar 31 2020 22:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36943 * 120.00005 * 2 1 4 4 H 1.07999 * 119.99757 * 202.07139 * 3 2 1 5 5 C 1.38809 * 119.99738 * 22.06604 * 3 2 1 6 6 N 1.31620 * 120.00400 * 12.40501 * 5 3 2 7 7 Si 1.86802 * 119.99719 * 192.40334 * 5 3 2 8 8 H 1.48497 * 109.46901 * 90.00356 * 7 5 3 9 9 H 1.48498 * 109.47026 * 209.99981 * 7 5 3 10 10 H 1.48493 * 109.47210 * 330.00240 * 7 5 3 11 11 C 1.46504 * 120.00073 * 179.97438 * 2 1 3 12 12 H 1.09004 * 109.52109 * 180.02562 * 11 2 1 13 13 C 1.53044 * 109.49576 * 60.00481 * 11 2 1 14 14 C 1.53033 * 109.53729 * 178.68379 * 13 11 2 15 15 C 1.53188 * 109.31858 * 61.36123 * 14 13 11 16 16 N 1.46930 * 108.77546 * 305.36793 * 15 14 13 17 17 C 1.34774 * 120.63104 * 233.58450 * 16 15 14 18 18 O 1.21278 * 120.00092 * 179.97438 * 17 16 15 19 19 C 1.50705 * 119.99867 * 359.97438 * 17 16 15 20 20 C 1.53000 * 109.46752 * 180.02562 * 19 17 16 21 21 C 1.53007 * 109.46756 * 179.97438 * 20 19 17 22 22 C 1.53002 * 109.46860 * 179.97438 * 21 20 19 23 23 C 1.53173 * 109.54797 * 294.55875 * 22 21 20 24 24 C 1.53091 * 109.16425 * 183.15486 * 23 22 21 25 25 O 1.42901 * 109.41757 * 57.60668 * 24 23 22 26 26 C 1.42906 * 114.09741 * 298.84410 * 25 24 23 27 27 C 1.53093 * 109.41291 * 61.15686 * 26 25 24 28 28 C 1.46922 * 118.73898 * 53.60363 * 16 15 14 29 29 H 1.09001 * 109.46723 * 274.30758 * 1 2 3 30 30 H 1.09000 * 109.47342 * 34.30722 * 1 2 3 31 31 H 1.09002 * 109.47095 * 154.31171 * 1 2 3 32 32 H 0.96997 * 120.00263 * 179.97438 * 6 5 3 33 33 H 1.09000 * 109.45432 * 298.69915 * 13 11 2 34 34 H 1.08994 * 109.46321 * 58.67245 * 13 11 2 35 35 H 1.09003 * 109.49629 * 181.31636 * 14 13 11 36 36 H 1.09001 * 109.49491 * 301.37521 * 14 13 11 37 37 H 1.09009 * 109.58598 * 65.15038 * 15 14 13 38 38 H 1.08997 * 109.59440 * 185.57671 * 15 14 13 39 39 H 1.08999 * 109.46841 * 299.99658 * 19 17 16 40 40 H 1.08995 * 109.47231 * 60.00128 * 19 17 16 41 41 H 1.08999 * 109.46989 * 299.99349 * 20 19 17 42 42 H 1.08995 * 109.47326 * 59.99968 * 20 19 17 43 43 H 1.08993 * 109.46988 * 300.00022 * 21 20 19 44 44 H 1.09003 * 109.46687 * 60.00061 * 21 20 19 45 45 H 1.08999 * 109.54015 * 54.82727 * 22 21 20 46 46 H 1.09003 * 109.51688 * 303.05809 * 23 22 21 47 47 H 1.08996 * 109.52344 * 63.24403 * 23 22 21 48 48 H 1.09000 * 109.48024 * 297.62127 * 24 23 22 49 49 H 1.09004 * 109.48897 * 177.59703 * 24 23 22 50 50 H 1.09000 * 109.47854 * 301.17240 * 26 25 24 51 51 H 1.09002 * 109.48883 * 181.14261 * 26 25 24 52 52 H 1.09004 * 109.52060 * 182.48408 * 27 26 25 53 53 H 1.08995 * 109.52574 * 62.30213 * 27 26 25 54 54 H 1.09001 * 109.59116 * 186.60626 * 28 16 15 55 55 H 1.08998 * 109.59005 * 66.18226 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1703 1.2202 -0.3515 5 6 1.5318 2.3440 0.4516 6 7 0.3898 2.2701 1.1018 7 14 2.3213 4.0075 0.1367 8 1 1.8346 4.5492 -1.1575 9 1 1.9594 4.9425 1.2321 10 1 3.7973 3.8531 0.0850 11 6 2.1975 -1.2687 0.0006 12 1 3.2694 -1.0705 0.0009 13 6 1.8283 -2.0723 -1.2485 14 6 2.6176 -3.3832 -1.2656 15 6 2.2497 -4.2123 -0.0311 16 7 2.4654 -3.3937 1.1698 17 6 3.2358 -3.8451 2.1793 18 8 3.4065 -3.1596 3.1651 19 6 3.8853 -5.2016 2.0831 20 6 4.6978 -5.4691 3.3516 21 6 5.3566 -6.8466 3.2542 22 6 6.1696 -7.1139 4.5224 23 6 7.3354 -6.1235 4.6021 24 6 8.1879 -6.4486 5.8314 25 8 8.6493 -7.7983 5.7461 26 6 7.6035 -8.7717 5.7164 27 6 6.7275 -8.5399 4.4824 28 6 1.8248 -2.0739 1.2494 29 1 -0.3633 0.0772 1.0248 30 1 -0.3634 0.8489 -0.5792 31 1 -0.3633 -0.9261 -0.4455 32 1 -0.0417 3.0793 1.4177 33 1 0.7606 -2.2914 -1.2368 34 1 2.0700 -1.4914 -2.1386 35 1 2.3716 -3.9443 -2.1672 36 1 3.6855 -3.1651 -1.2529 37 1 1.2021 -4.5080 -0.0884 38 1 2.8802 -5.1003 0.0139 39 1 3.1156 -5.9662 1.9770 40 1 4.5453 -5.2278 1.2161 41 1 5.4674 -4.7046 3.4580 42 1 4.0374 -5.4431 4.2183 43 1 4.5867 -7.6108 3.1479 44 1 6.0169 -6.8730 2.3873 45 1 5.5298 -6.9971 5.3971 46 1 7.9460 -6.2066 3.7030 47 1 6.9462 -5.1089 4.6867 48 1 7.5875 -6.3259 6.7329 49 1 9.0431 -5.7738 5.8697 50 1 6.9955 -8.6795 6.6163 51 1 8.0375 -9.7706 5.6716 52 1 5.9035 -9.2535 4.4814 53 1 7.3258 -8.6719 3.5809 54 1 2.1750 -1.5508 2.1393 55 1 0.7427 -2.1951 1.2965 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690811372.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:52 Heat of formation + Delta-G solvation = -104.991791 kcal Electronic energy + Delta-G solvation = -30186.465480 eV Core-core repulsion = 26222.095009 eV Total energy + Delta-G solvation = -3964.370471 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.24666 -40.36036 -38.97743 -36.85037 -36.71470 -34.12064 -33.48102 -32.80248 -31.98618 -30.66795 -28.88047 -28.07934 -26.39184 -25.43737 -24.65180 -24.24806 -23.03982 -22.15605 -20.96675 -20.83320 -19.75331 -18.79442 -18.07823 -17.16411 -17.06139 -16.96166 -16.79318 -16.63906 -15.96290 -15.71247 -15.55578 -15.29198 -15.23246 -15.01185 -14.69531 -14.59486 -14.40103 -13.96648 -13.84723 -13.74452 -13.51204 -13.24763 -12.97220 -12.84944 -12.74936 -12.66013 -12.51136 -12.40588 -12.22689 -12.20374 -12.12878 -12.06200 -11.81148 -11.74000 -11.63192 -11.56482 -11.39421 -11.15735 -11.12524 -10.75696 -10.67169 -10.39020 -9.65741 -8.79210 -7.86522 -5.34841 1.42549 1.43679 1.52750 1.68927 2.05134 2.48282 2.98843 3.26599 3.52929 3.62217 3.75368 3.79424 3.92330 3.99539 4.09332 4.10783 4.14497 4.18027 4.23418 4.28481 4.33400 4.37811 4.51671 4.52598 4.59595 4.65470 4.71044 4.73576 4.76764 4.79538 4.80251 4.86303 4.91739 4.95161 4.96542 5.03450 5.07308 5.11654 5.16044 5.17992 5.21533 5.25012 5.32314 5.42376 5.46475 5.52353 5.55215 5.56816 5.61769 5.69235 6.28151 6.29288 6.53937 7.11377 7.25553 7.83583 8.25773 9.16271 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016224 B = 0.002080 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.422744 B =13458.064667 C =14539.268566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.610 5.610 3 C -0.264 4.264 4 H 0.067 0.933 5 C -0.055 4.055 6 N -0.938 5.938 7 Si 0.971 3.029 8 H -0.281 1.281 9 H -0.295 1.295 10 H -0.271 1.271 11 C 0.167 3.833 12 H 0.042 0.958 13 C -0.124 4.124 14 C -0.123 4.123 15 C 0.103 3.897 16 N -0.609 5.609 17 C 0.497 3.503 18 O -0.601 6.601 19 C -0.125 4.125 20 C -0.103 4.103 21 C -0.101 4.101 22 C -0.091 4.091 23 C -0.152 4.152 24 C 0.056 3.944 25 O -0.406 6.406 26 C 0.052 3.948 27 C -0.144 4.144 28 C 0.114 3.886 29 H -0.003 1.003 30 H 0.018 0.982 31 H 0.035 0.965 32 H 0.248 0.752 33 H 0.062 0.938 34 H 0.055 0.945 35 H 0.109 0.891 36 H 0.062 0.938 37 H 0.082 0.918 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.119 0.881 41 H 0.049 0.951 42 H 0.049 0.951 43 H 0.082 0.918 44 H 0.074 0.926 45 H 0.065 0.935 46 H 0.070 0.930 47 H 0.068 0.932 48 H 0.051 0.949 49 H 0.096 0.904 50 H 0.052 0.948 51 H 0.105 0.895 52 H 0.090 0.910 53 H 0.071 0.929 54 H 0.039 0.961 55 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.894 -27.724 0.199 29.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.333 5.333 3 C -0.394 4.394 4 H 0.084 0.916 5 C -0.250 4.250 6 N -0.585 5.585 7 Si 0.799 3.201 8 H -0.207 1.207 9 H -0.222 1.222 10 H -0.196 1.196 11 C 0.059 3.941 12 H 0.060 0.940 13 C -0.163 4.163 14 C -0.161 4.161 15 C -0.018 4.018 16 N -0.342 5.342 17 C 0.287 3.713 18 O -0.483 6.483 19 C -0.165 4.165 20 C -0.141 4.141 21 C -0.139 4.139 22 C -0.110 4.110 23 C -0.190 4.190 24 C -0.020 4.020 25 O -0.326 6.326 26 C -0.025 4.025 27 C -0.182 4.182 28 C -0.012 4.012 29 H 0.015 0.985 30 H 0.036 0.964 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.127 0.873 36 H 0.081 0.919 37 H 0.100 0.900 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.137 0.863 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.101 0.899 44 H 0.093 0.907 45 H 0.084 0.916 46 H 0.088 0.912 47 H 0.086 0.914 48 H 0.069 0.931 49 H 0.114 0.886 50 H 0.070 0.930 51 H 0.123 0.877 52 H 0.108 0.892 53 H 0.090 0.910 54 H 0.057 0.943 55 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.070 -27.285 0.749 29.094 hybrid contribution -0.344 2.096 0.444 2.170 sum 9.725 -25.190 1.193 27.028 Atomic orbital electron populations 1.20475 0.82524 0.96168 0.97184 1.44187 1.02212 1.01067 1.85805 1.19537 0.97924 0.86610 1.35377 0.91567 1.25826 0.98623 1.01981 0.98596 1.70242 1.19729 1.27472 1.41049 0.85209 0.78241 0.79643 0.77022 1.20738 1.22175 1.19633 1.20791 0.94707 0.85250 0.93358 0.93966 1.21930 1.00592 0.96561 0.97201 1.21895 1.00108 0.95174 0.98969 1.22127 1.03397 0.93998 0.82316 1.48422 1.48684 1.17711 1.19414 1.21795 0.77991 0.89947 0.81543 1.90682 1.63301 1.60771 1.33503 1.21766 1.01251 0.91831 1.01612 1.21343 0.98576 0.97848 0.96343 1.21559 0.99252 0.95580 0.97475 1.21215 0.95923 0.94868 0.98992 1.22272 0.97520 0.99939 0.99254 1.22655 0.99093 0.83227 0.97032 1.87894 1.33838 1.15982 1.94859 1.22773 0.89709 0.92576 0.97394 1.22208 1.00253 0.96636 0.99107 1.21903 0.96321 0.83448 0.99503 0.98502 0.96357 0.94616 0.94240 0.91898 0.92647 0.87308 0.91899 0.89994 0.85840 0.85881 0.86284 0.93214 0.93260 0.89906 0.90720 0.91643 0.91175 0.91372 0.93104 0.88580 0.92987 0.87703 0.89177 0.91010 0.94250 0.92680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.11 7.91 127.77 1.01 10.12 16 2 N -0.61 -31.43 2.82 -702.33 -1.98 -33.41 16 3 C -0.26 -15.13 9.60 84.03 0.81 -14.32 16 4 H 0.07 3.72 7.81 -2.91 -0.02 3.70 16 5 C -0.06 -3.22 5.11 84.86 0.43 -2.79 16 6 N -0.94 -57.52 10.63 21.65 0.23 -57.29 16 7 Si 0.97 46.82 29.57 68.60 2.03 48.84 16 8 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 9 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 10 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 11 C 0.17 6.92 2.74 45.07 0.12 7.04 16 12 H 0.04 1.90 7.86 -2.38 -0.02 1.88 16 13 C -0.12 -3.79 5.13 30.62 0.16 -3.63 16 14 C -0.12 -2.45 6.08 30.67 0.19 -2.26 16 15 C 0.10 1.85 6.34 86.36 0.55 2.40 16 16 N -0.61 -18.03 2.97 -818.91 -2.43 -20.46 16 17 C 0.50 15.13 7.70 87.66 0.67 15.81 16 18 O -0.60 -25.34 15.39 -3.02 -0.05 -25.38 16 19 C -0.13 -2.14 4.05 29.85 0.12 -2.02 16 20 C -0.10 -1.93 4.27 30.60 0.13 -1.80 16 21 C -0.10 -1.21 4.69 30.60 0.14 -1.06 16 22 C -0.09 -1.23 2.27 -10.68 -0.02 -1.25 16 23 C -0.15 -2.42 5.10 30.68 0.16 -2.27 16 24 C 0.06 0.92 6.84 72.01 0.49 1.41 16 25 O -0.41 -7.48 10.77 -148.98 -1.60 -9.08 16 26 C 0.05 0.66 6.84 72.01 0.49 1.15 16 27 C -0.14 -1.56 5.42 30.69 0.17 -1.39 16 28 C 0.11 4.58 5.79 86.36 0.50 5.08 16 29 H 0.00 -0.19 7.41 -2.39 -0.02 -0.21 16 30 H 0.02 0.98 7.20 -2.39 -0.02 0.96 16 31 H 0.04 1.49 6.46 -2.39 -0.02 1.47 16 32 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 33 H 0.06 1.88 6.71 -2.39 -0.02 1.87 16 34 H 0.05 1.80 8.14 -2.39 -0.02 1.79 16 35 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 38 H 0.12 1.21 5.93 -2.39 -0.01 1.20 16 39 H 0.12 1.34 7.94 -2.39 -0.02 1.32 16 40 H 0.12 1.43 7.69 -2.39 -0.02 1.41 16 41 H 0.05 1.15 6.62 -2.39 -0.02 1.14 16 42 H 0.05 1.11 8.10 -2.39 -0.02 1.09 16 43 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 47 H 0.07 1.23 6.75 -2.39 -0.02 1.22 16 48 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 49 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 50 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 51 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 52 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 53 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 54 H 0.04 1.97 7.01 -2.39 -0.02 1.95 16 55 H 0.05 2.23 7.51 -2.39 -0.02 2.21 16 Total: -1.00 -77.89 412.67 3.15 -74.74 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: 0.83 Total: 11.82 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: 6.12 Total: 10.22 kcal Atomic # 7 Polarization: -106.98 SS G_CDS: -4.18 Total: -111.16 kcal Atomic # 8 Polarization: -32.82 SS G_CDS: -1.65 Total: -34.47 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.84 kcal Total: -77.89 3.15 -74.74 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690811372.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.249 kcal (2) G-P(sol) polarization free energy of solvation -77.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds