Wall clock time and date at job start Tue Mar 31 2020 22:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46496 * 120.00001 * 2 1 4 4 C 1.52996 * 109.47552 * 270.00412 * 3 2 1 5 5 C 1.52996 * 109.47381 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.47271 * 180.02562 * 5 4 3 7 7 C 1.52996 * 109.47271 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.47381 * 179.97438 * 7 6 5 9 9 N 1.46496 * 109.47552 * 179.97438 * 8 7 6 10 10 C 1.36931 * 120.00194 * 179.97438 * 9 8 7 11 11 H 1.08000 * 120.00488 * 0.02562 * 10 9 8 12 12 C 1.38815 * 120.00182 * 179.97438 * 10 9 8 13 13 N 1.31621 * 119.99756 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00253 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47314 * 60.00279 * 14 12 10 16 16 H 1.48499 * 109.47110 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.46936 * 300.00082 * 14 12 10 18 18 C 1.34774 * 119.99736 * 180.02562 * 2 1 3 19 19 O 1.21289 * 119.99563 * 179.97438 * 18 2 1 20 20 C 1.50696 * 120.00449 * 359.97438 * 18 2 1 21 21 H 1.09002 * 115.55394 * 323.82580 * 20 18 2 22 22 C 1.53062 * 117.50763 * 178.12291 * 20 18 2 23 23 C 1.52705 * 59.93108 * 252.53176 * 22 20 18 24 24 C 1.53252 * 117.87696 * 107.77088 * 23 22 20 25 25 C 1.53324 * 108.48846 * 196.25057 * 24 23 22 26 26 O 1.42877 * 109.32424 * 306.04109 * 25 24 23 27 27 C 1.42865 * 114.52423 * 64.35522 * 26 25 24 28 28 C 1.53245 * 117.88278 * 252.22256 * 23 22 20 29 29 H 1.08994 * 109.47343 * 90.00101 * 1 2 3 30 30 H 1.09006 * 109.46772 * 209.99686 * 1 2 3 31 31 H 1.09002 * 109.47035 * 329.99154 * 1 2 3 32 32 H 1.09003 * 109.47147 * 149.99724 * 3 2 1 33 33 H 1.09007 * 109.47038 * 30.00678 * 3 2 1 34 34 H 1.09000 * 109.46796 * 59.99834 * 4 3 2 35 35 H 1.08998 * 109.46643 * 300.00107 * 4 3 2 36 36 H 1.09007 * 109.47003 * 299.99574 * 5 4 3 37 37 H 1.08995 * 109.47516 * 59.99591 * 5 4 3 38 38 H 1.08998 * 109.46554 * 299.99820 * 6 5 4 39 39 H 1.09000 * 109.46994 * 59.99615 * 6 5 4 40 40 H 1.09007 * 109.46989 * 299.99954 * 7 6 5 41 41 H 1.09003 * 109.47367 * 59.99106 * 7 6 5 42 42 H 1.08998 * 109.47104 * 300.00207 * 8 7 6 43 43 H 1.09000 * 109.46796 * 59.99669 * 8 7 6 44 44 H 0.97008 * 119.99889 * 359.97438 * 9 8 7 45 45 H 0.97000 * 120.00017 * 179.97438 * 13 12 10 46 46 H 1.08997 * 117.50830 * 359.97438 * 22 20 18 47 47 H 1.08999 * 117.50754 * 145.06427 * 22 20 18 48 48 H 1.09000 * 109.63321 * 315.95370 * 24 23 22 49 49 H 1.08999 * 109.63318 * 76.55267 * 24 23 22 50 50 H 1.08993 * 109.49734 * 186.08477 * 25 24 23 51 51 H 1.09001 * 109.52115 * 66.01098 * 25 24 23 52 52 H 1.09006 * 109.49332 * 175.68712 * 27 26 25 53 53 H 1.09003 * 109.52505 * 55.61931 * 27 26 25 54 54 H 1.09001 * 109.63759 * 283.45464 * 28 23 22 55 55 H 1.09004 * 109.63396 * 43.85108 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7105 -1.4424 5 6 3.2180 3.0352 -1.4424 6 6 3.4724 3.4773 -2.8849 7 6 4.2374 4.8023 -2.8848 8 6 4.4923 5.2441 -4.3273 9 7 5.2243 6.5131 -4.3273 10 6 5.5669 7.1059 -5.5131 11 1 5.2972 6.6382 -6.4485 12 6 6.2600 8.3086 -5.5131 13 7 6.5883 8.8789 -4.3732 14 14 6.7268 9.1177 -7.1308 15 1 5.4974 9.4122 -7.9098 16 1 7.4563 10.3824 -6.8593 17 1 7.5984 8.2013 -7.9091 18 6 2.1388 -1.1672 -0.0005 19 8 3.3517 -1.1672 -0.0010 20 6 1.3854 -2.4723 -0.0005 21 1 0.4631 -2.4828 0.5803 22 6 2.2070 -3.7629 -0.0456 23 6 1.4256 -3.3100 -1.2769 24 6 2.2193 -2.7617 -2.4676 25 6 1.2538 -2.0082 -3.3901 26 8 0.1643 -2.8655 -3.7358 27 6 -0.6588 -3.2522 -2.6339 28 6 0.1665 -4.0969 -1.6560 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3633 0.8899 0.5140 32 1 3.1499 1.1384 0.5139 33 1 1.6084 2.0283 0.5140 34 1 1.5000 1.8408 -1.9562 35 1 3.0415 0.9509 -1.9563 36 1 2.6292 3.7950 -0.9284 37 1 4.1704 2.9045 -0.9287 38 1 4.0609 2.7176 -3.3992 39 1 2.5197 3.6082 -3.3981 40 1 3.6485 5.5618 -2.3705 41 1 5.1900 4.6719 -2.3713 42 1 5.0814 4.4845 -4.8412 43 1 3.5399 5.3744 -4.8410 44 1 5.4662 6.9335 -3.4871 45 1 7.0729 9.7192 -4.3731 46 1 3.2924 -3.6679 -0.0757 47 1 1.8249 -4.6225 0.5051 48 1 2.9915 -2.0803 -2.1105 49 1 2.6782 -3.5864 -3.0129 50 1 1.7786 -1.7039 -4.2955 51 1 0.8732 -1.1255 -2.8761 52 1 -1.5027 -3.8381 -2.9983 53 1 -1.0272 -2.3618 -2.1243 54 1 0.4505 -5.0354 -2.1322 55 1 -0.4199 -4.3034 -0.7607 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691454958.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:12 Heat of formation + Delta-G solvation = -91.189627 kcal Electronic energy + Delta-G solvation = -29694.581437 eV Core-core repulsion = 25730.809472 eV Total energy + Delta-G solvation = -3963.771965 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.76468 -39.95877 -38.05962 -37.44406 -36.81412 -35.74723 -33.74967 -32.22793 -31.88189 -31.09479 -28.86781 -27.53667 -26.40145 -24.97048 -24.74020 -23.85647 -23.20550 -22.09471 -21.94906 -20.64925 -19.42677 -19.13282 -18.33005 -17.40558 -17.04108 -16.91182 -16.81557 -16.65894 -16.28771 -15.86383 -15.62490 -15.41511 -15.27677 -15.11321 -14.92021 -14.41231 -14.06760 -14.05688 -13.85920 -13.83165 -13.53553 -13.46968 -13.20977 -13.04230 -12.93511 -12.82484 -12.53887 -12.46183 -12.31942 -12.23458 -12.03804 -12.02148 -11.84525 -11.75546 -11.72279 -11.51275 -11.39293 -11.35620 -11.08765 -10.94832 -10.76300 -10.25210 -9.68128 -9.03954 -7.97794 -5.27789 1.41910 1.45139 1.49366 1.55621 1.96328 2.54323 2.72749 2.92682 3.34952 3.37327 3.61967 3.68904 3.72894 3.76938 3.87043 3.98319 4.02424 4.05512 4.16419 4.18468 4.23262 4.32894 4.35534 4.44896 4.46063 4.52172 4.60031 4.62376 4.65952 4.72353 4.74356 4.75951 4.80934 4.85011 4.88194 4.89664 4.94829 4.96471 5.01438 5.03367 5.09407 5.12527 5.18336 5.24254 5.24540 5.32439 5.44556 5.48684 5.50517 5.56023 6.24565 6.26476 6.35741 7.14882 7.29892 8.06180 8.30120 9.25704 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.017688 B = 0.001710 C = 0.001632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.578503 B =16370.343918 C =17155.709955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.611 5.611 3 C 0.114 3.886 4 C -0.120 4.120 5 C -0.109 4.109 6 C -0.104 4.104 7 C -0.114 4.114 8 C 0.148 3.852 9 N -0.750 5.750 10 C -0.253 4.253 11 H 0.075 0.925 12 C -0.079 4.079 13 N -0.970 5.970 14 Si 0.979 3.021 15 H -0.275 1.275 16 H -0.292 1.292 17 H -0.278 1.278 18 C 0.535 3.465 19 O -0.584 6.584 20 C -0.183 4.183 21 H 0.155 0.845 22 C -0.141 4.141 23 C -0.092 4.092 24 C -0.127 4.127 25 C 0.070 3.930 26 O -0.401 6.401 27 C 0.054 3.946 28 C -0.110 4.110 29 H 0.061 0.939 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.060 0.940 33 H 0.102 0.898 34 H 0.074 0.926 35 H 0.042 0.958 36 H 0.076 0.924 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.069 0.931 40 H 0.061 0.939 41 H 0.052 0.948 42 H 0.014 0.986 43 H 0.020 0.980 44 H 0.373 0.627 45 H 0.253 0.747 46 H 0.082 0.918 47 H 0.130 0.870 48 H 0.060 0.940 49 H 0.075 0.925 50 H 0.090 0.910 51 H 0.050 0.950 52 H 0.111 0.889 53 H 0.062 0.938 54 H 0.080 0.920 55 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.980 -30.758 13.027 39.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.342 5.342 3 C -0.009 4.009 4 C -0.159 4.159 5 C -0.148 4.148 6 C -0.142 4.142 7 C -0.152 4.152 8 C 0.022 3.978 9 N -0.393 5.393 10 C -0.385 4.385 11 H 0.093 0.907 12 C -0.271 4.271 13 N -0.621 5.621 14 Si 0.807 3.193 15 H -0.201 1.201 16 H -0.218 1.218 17 H -0.204 1.204 18 C 0.325 3.675 19 O -0.464 6.464 20 C -0.204 4.204 21 H 0.172 0.828 22 C -0.178 4.178 23 C -0.093 4.093 24 C -0.165 4.165 25 C -0.007 4.007 26 O -0.320 6.320 27 C -0.022 4.022 28 C -0.148 4.148 29 H 0.080 0.920 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.079 0.921 33 H 0.121 0.879 34 H 0.093 0.907 35 H 0.061 0.939 36 H 0.094 0.906 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.070 0.930 42 H 0.032 0.968 43 H 0.038 0.962 44 H 0.205 0.795 45 H 0.061 0.939 46 H 0.101 0.899 47 H 0.148 0.852 48 H 0.078 0.922 49 H 0.094 0.906 50 H 0.108 0.892 51 H 0.069 0.931 52 H 0.129 0.871 53 H 0.080 0.920 54 H 0.099 0.901 55 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -21.415 -30.791 12.666 39.586 hybrid contribution 1.126 1.147 -0.248 1.627 sum -20.288 -29.643 12.419 38.007 Atomic orbital electron populations 1.22123 0.77071 1.05034 1.02927 1.47912 1.08520 1.05289 1.72454 1.21556 0.97512 0.84796 0.97015 1.21794 1.00623 0.96529 0.96929 1.21444 1.00334 0.96732 0.96243 1.21412 1.00103 0.95231 0.97472 1.21614 1.00202 0.97883 0.95487 1.20856 0.93875 0.86658 0.96399 1.42641 1.67636 1.23678 1.05330 1.19648 1.28828 1.02745 0.87258 0.90744 1.25671 1.01929 0.98900 1.00563 1.69823 1.46159 1.19875 1.26208 0.85129 0.77997 0.77334 0.78802 1.20131 1.21817 1.20366 1.20165 0.86979 0.85661 0.74728 1.90694 1.16039 1.87922 1.51779 1.22543 1.03434 0.89546 1.04829 0.82762 1.23102 0.98617 0.96131 0.99931 1.21454 0.99388 1.00205 0.88233 1.21858 0.97971 1.00697 0.95960 1.22500 0.87437 0.91773 0.99007 1.87870 1.41715 1.67919 1.34529 1.22853 0.92955 0.98756 0.87661 1.21876 0.93552 0.98233 1.01090 0.92028 0.89016 0.89184 0.92106 0.87949 0.90695 0.93931 0.90558 0.92699 0.92637 0.91186 0.92053 0.92967 0.96802 0.96172 0.79493 0.93869 0.89894 0.85173 0.92176 0.90603 0.89163 0.93129 0.87063 0.92019 0.90129 0.87711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.44 10.31 127.77 1.32 1.76 16 2 N -0.61 -8.95 2.87 -846.75 -2.43 -11.38 16 3 C 0.11 1.90 5.45 86.38 0.47 2.37 16 4 C -0.12 -2.24 5.54 30.59 0.17 -2.08 16 5 C -0.11 -2.33 5.21 30.59 0.16 -2.17 16 6 C -0.10 -2.70 5.21 30.59 0.16 -2.54 16 7 C -0.11 -3.86 5.33 30.59 0.16 -3.69 16 8 C 0.15 6.37 6.26 86.38 0.54 6.91 16 9 N -0.75 -40.86 5.60 -343.47 -1.92 -42.79 16 10 C -0.25 -14.92 9.99 84.04 0.84 -14.08 16 11 H 0.07 4.20 7.83 -2.91 -0.02 4.18 16 12 C -0.08 -4.69 5.50 84.86 0.47 -4.22 16 13 N -0.97 -61.32 13.06 21.65 0.28 -61.03 16 14 Si 0.98 47.43 29.55 68.60 2.03 49.46 16 15 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 16 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 17 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 18 C 0.53 10.29 6.27 87.66 0.55 10.84 16 19 O -0.58 -16.79 14.82 -3.06 -0.05 -16.84 16 20 C -0.18 -2.19 4.94 -11.61 -0.06 -2.25 16 21 H 0.15 0.83 6.51 -2.39 -0.02 0.81 16 22 C -0.14 -1.78 9.52 30.52 0.29 -1.49 16 23 C -0.09 -1.11 2.03 -52.20 -0.11 -1.21 16 24 C -0.13 -2.18 5.58 30.79 0.17 -2.01 16 25 C 0.07 1.14 6.85 72.09 0.49 1.63 16 26 O -0.40 -6.57 10.69 -148.98 -1.59 -8.17 16 27 C 0.05 0.47 6.84 72.09 0.49 0.96 16 28 C -0.11 -0.77 5.92 30.78 0.18 -0.59 16 29 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.09 0.21 6.03 -2.38 -0.01 0.19 16 31 H 0.09 0.32 7.89 -2.39 -0.02 0.30 16 32 H 0.06 1.32 7.42 -2.39 -0.02 1.30 16 33 H 0.10 1.20 7.89 -2.38 -0.02 1.18 16 34 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 37 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 41 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.37 21.39 7.67 -92.70 -0.71 20.68 16 45 H 0.25 15.38 8.31 -92.71 -0.77 14.61 16 46 H 0.08 1.53 7.67 -2.39 -0.02 1.51 16 47 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 48 H 0.06 1.36 6.12 -2.39 -0.01 1.34 16 49 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 50 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 51 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 52 H 0.11 0.60 8.14 -2.38 -0.02 0.58 16 53 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 54 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 55 H 0.10 0.19 8.08 -2.38 -0.02 0.17 16 Total: -1.00 -77.09 432.65 2.75 -74.34 By element: Atomic # 1 Polarization: 28.13 SS G_CDS: 0.13 Total: 28.26 kcal Atomic # 6 Polarization: -18.16 SS G_CDS: 6.30 Total: -11.86 kcal Atomic # 7 Polarization: -111.13 SS G_CDS: -4.07 Total: -115.21 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -1.64 Total: -25.00 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 2.03 Total: 49.46 kcal Total: -77.09 2.75 -74.34 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691454958.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.847 kcal (2) G-P(sol) polarization free energy of solvation -77.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds