Wall clock time and date at job start Tue Mar 31 2020 22:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46506 * 119.99881 * 2 1 4 4 C 1.53000 * 109.47373 * 89.99590 * 3 2 1 5 5 C 1.52996 * 109.47335 * 180.02562 * 4 3 2 6 6 C 1.52995 * 109.47398 * 179.97438 * 5 4 3 7 7 C 1.52996 * 109.47290 * 179.97438 * 6 5 4 8 8 C 1.52995 * 109.47290 * 179.97438 * 7 6 5 9 9 N 1.46506 * 109.47437 * 180.02562 * 8 7 6 10 10 C 1.36936 * 120.00039 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00084 * 0.02562 * 10 9 8 12 12 C 1.38815 * 119.99655 * 180.02562 * 10 9 8 13 13 N 1.31621 * 119.99721 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 120.00301 * 359.97438 * 12 10 9 15 15 H 1.48504 * 109.46472 * 89.99866 * 14 12 10 16 16 H 1.48496 * 109.47308 * 210.00164 * 14 12 10 17 17 H 1.48502 * 109.47018 * 330.00466 * 14 12 10 18 18 C 1.34775 * 120.00243 * 179.97438 * 2 1 3 19 19 O 1.21288 * 120.00237 * 180.02562 * 18 2 1 20 20 C 1.50696 * 119.99821 * 0.02562 * 18 2 1 21 21 H 1.08998 * 115.55804 * 33.07595 * 20 18 2 22 22 C 1.53065 * 117.50537 * 178.77802 * 20 18 2 23 23 C 1.52692 * 59.93365 * 107.46904 * 22 20 18 24 24 C 1.53251 * 117.88325 * 107.76953 * 23 22 20 25 25 C 1.53319 * 108.49213 * 196.25113 * 24 23 22 26 26 O 1.42866 * 109.32405 * 306.03823 * 25 24 23 27 27 C 1.42875 * 114.52559 * 64.36101 * 26 25 24 28 28 C 1.53243 * 117.88118 * 252.22417 * 23 22 20 29 29 H 1.09004 * 109.46873 * 90.00645 * 1 2 3 30 30 H 1.09000 * 109.47504 * 210.00175 * 1 2 3 31 31 H 1.09001 * 109.47552 * 330.01210 * 1 2 3 32 32 H 1.09000 * 109.47068 * 329.99349 * 3 2 1 33 33 H 1.09000 * 109.47241 * 209.99015 * 3 2 1 34 34 H 1.08999 * 109.47670 * 59.99567 * 4 3 2 35 35 H 1.09008 * 109.46753 * 299.99878 * 4 3 2 36 36 H 1.08999 * 109.47389 * 59.99034 * 5 4 3 37 37 H 1.09008 * 109.46806 * 299.99484 * 5 4 3 38 38 H 1.09009 * 109.47033 * 59.99789 * 6 5 4 39 39 H 1.08995 * 109.47078 * 300.00039 * 6 5 4 40 40 H 1.09000 * 109.46987 * 60.00231 * 7 6 5 41 41 H 1.08995 * 109.47541 * 300.00305 * 7 6 5 42 42 H 1.08999 * 109.47367 * 59.99903 * 8 7 6 43 43 H 1.09000 * 109.47604 * 300.00108 * 8 7 6 44 44 H 0.96998 * 119.99468 * 359.97438 * 9 8 7 45 45 H 0.97000 * 120.00043 * 180.02562 * 13 12 10 46 46 H 1.09007 * 117.50296 * 214.94143 * 22 20 18 47 47 H 1.08997 * 117.50726 * 359.97438 * 22 20 18 48 48 H 1.09000 * 109.63165 * 315.95553 * 24 23 22 49 49 H 1.09005 * 109.63187 * 76.54562 * 24 23 22 50 50 H 1.09000 * 109.49699 * 186.08674 * 25 24 23 51 51 H 1.09002 * 109.52106 * 66.01160 * 25 24 23 52 52 H 1.08997 * 109.49329 * 175.68802 * 27 26 25 53 53 H 1.08994 * 109.49331 * 55.59570 * 27 26 25 54 54 H 1.08995 * 109.64032 * 283.44785 * 28 23 22 55 55 H 1.08998 * 109.63710 * 43.85016 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7106 1.4425 5 6 3.2168 3.0359 1.4425 6 6 3.4712 3.4780 2.8849 7 6 4.2361 4.8030 2.8849 8 6 4.4899 5.2454 4.3273 9 7 5.2219 6.5145 4.3273 10 6 5.5627 7.1084 5.5132 11 1 5.2922 6.6410 6.4485 12 6 6.2557 8.3111 5.5131 13 7 6.5838 8.8817 6.6529 14 14 6.7242 9.1192 3.8953 15 1 5.6351 10.0323 3.4647 16 1 7.9783 9.8940 4.0738 17 1 6.9312 8.0735 2.8614 18 6 2.1389 -1.1672 0.0005 19 8 3.3517 -1.1672 0.0010 20 6 1.3854 -2.4722 0.0005 21 1 0.4369 -2.4676 -0.5365 22 6 2.2075 -3.7631 -0.0278 23 6 1.4849 -3.3442 1.2504 24 6 0.2442 -4.1419 1.6666 25 6 -0.5338 -3.3245 2.7045 26 8 0.3402 -2.9673 3.7767 27 6 1.4128 -2.1003 3.4038 28 6 2.3337 -2.8279 2.4171 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3634 0.8901 0.5136 32 1 1.6084 2.0284 -0.5139 33 1 3.1499 1.1385 -0.5137 34 1 3.0414 0.9510 1.9565 35 1 1.4998 1.8409 1.9562 36 1 2.6274 3.7953 0.9286 37 1 4.1693 2.9059 0.9286 38 1 4.0604 2.7187 3.3991 39 1 2.5186 3.6080 3.3984 40 1 3.6472 5.5625 2.3706 41 1 5.1887 4.6727 2.3715 42 1 5.0786 4.4861 4.8420 43 1 3.5371 5.3760 4.8404 44 1 5.4651 6.9341 3.4872 45 1 7.0677 9.7224 6.6529 46 1 1.7994 -4.6077 -0.5831 47 1 3.2931 -3.6682 -0.0469 48 1 -0.3852 -4.3213 0.7950 49 1 0.5497 -5.0928 2.1033 50 1 -1.3600 -3.9206 3.0920 51 1 -0.9250 -2.4207 2.2375 52 1 1.9796 -1.8202 4.2917 53 1 1.0091 -1.2045 2.9319 54 1 2.8171 -3.6668 2.9178 55 1 3.0910 -2.1393 2.0425 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691454959.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:17 Heat of formation + Delta-G solvation = -89.233490 kcal Electronic energy + Delta-G solvation = -29735.098085 eV Core-core repulsion = 25771.410945 eV Total energy + Delta-G solvation = -3963.687140 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.77554 -39.96493 -38.10271 -37.50663 -36.84569 -35.78582 -33.87004 -32.23565 -32.20798 -31.13423 -29.05340 -27.55815 -26.38258 -24.79266 -24.72422 -23.79909 -23.16360 -22.21718 -21.92597 -20.64331 -19.63601 -19.43522 -18.29513 -17.40158 -17.05467 -16.91067 -16.82064 -16.61767 -16.31996 -15.87448 -15.83080 -15.63283 -15.18662 -15.00882 -14.84629 -14.41716 -14.19756 -14.06514 -13.90954 -13.88803 -13.57952 -13.45300 -13.40334 -13.16922 -12.96226 -12.91166 -12.60832 -12.48329 -12.32732 -12.12298 -12.06500 -11.90953 -11.89405 -11.76251 -11.72859 -11.59228 -11.38994 -11.36711 -11.10601 -10.99523 -10.76038 -10.26135 -9.67130 -9.33585 -8.06016 -5.40339 1.35701 1.39957 1.40129 1.47745 1.96528 2.46212 2.73307 2.91869 3.24666 3.36192 3.53971 3.63469 3.69766 3.76995 3.87234 3.94336 3.99232 4.01680 4.16051 4.18486 4.19125 4.29011 4.32673 4.42996 4.47316 4.50616 4.59048 4.59753 4.65472 4.71941 4.72497 4.75638 4.80513 4.85291 4.87563 4.89670 4.92013 4.97022 4.99664 5.01860 5.08445 5.11864 5.17935 5.23119 5.23956 5.31083 5.47871 5.48866 5.56766 5.71678 6.18329 6.25674 6.35452 7.04440 7.14433 7.80670 8.01103 9.15515 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018060 B = 0.001778 C = 0.001696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.015293 B =15747.270625 C =16507.160291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.612 5.612 3 C 0.114 3.886 4 C -0.122 4.122 5 C -0.109 4.109 6 C -0.107 4.107 7 C -0.118 4.118 8 C 0.150 3.850 9 N -0.762 5.762 10 C -0.243 4.243 11 H 0.053 0.947 12 C -0.067 4.067 13 N -0.983 5.983 14 Si 0.962 3.038 15 H -0.274 1.274 16 H -0.293 1.293 17 H -0.253 1.253 18 C 0.535 3.465 19 O -0.583 6.583 20 C -0.183 4.183 21 H 0.153 0.847 22 C -0.139 4.139 23 C -0.092 4.092 24 C -0.111 4.111 25 C 0.054 3.946 26 O -0.402 6.402 27 C 0.070 3.930 28 C -0.128 4.128 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.102 0.898 33 H 0.061 0.939 34 H 0.041 0.959 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.056 0.944 38 H 0.054 0.946 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.059 0.941 42 H 0.016 0.984 43 H 0.024 0.976 44 H 0.367 0.633 45 H 0.259 0.741 46 H 0.130 0.870 47 H 0.083 0.917 48 H 0.105 0.895 49 H 0.081 0.919 50 H 0.112 0.888 51 H 0.061 0.939 52 H 0.090 0.910 53 H 0.050 0.950 54 H 0.075 0.925 55 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.790 -30.740 -20.762 43.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.344 5.344 3 C -0.008 4.008 4 C -0.160 4.160 5 C -0.147 4.147 6 C -0.145 4.145 7 C -0.156 4.156 8 C 0.024 3.976 9 N -0.408 5.408 10 C -0.374 4.374 11 H 0.071 0.929 12 C -0.259 4.259 13 N -0.634 5.634 14 Si 0.788 3.212 15 H -0.199 1.199 16 H -0.219 1.219 17 H -0.177 1.177 18 C 0.325 3.675 19 O -0.463 6.463 20 C -0.204 4.204 21 H 0.170 0.830 22 C -0.177 4.177 23 C -0.093 4.093 24 C -0.148 4.148 25 C -0.023 4.023 26 O -0.321 6.321 27 C -0.007 4.007 28 C -0.166 4.166 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.120 0.880 33 H 0.080 0.920 34 H 0.060 0.940 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.078 0.922 42 H 0.034 0.966 43 H 0.042 0.958 44 H 0.200 0.800 45 H 0.068 0.932 46 H 0.148 0.852 47 H 0.102 0.898 48 H 0.123 0.877 49 H 0.099 0.901 50 H 0.130 0.870 51 H 0.079 0.921 52 H 0.108 0.892 53 H 0.068 0.932 54 H 0.093 0.907 55 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -21.216 -30.783 -20.358 42.569 hybrid contribution 1.071 1.100 -0.472 1.606 sum -20.146 -29.683 -20.830 41.483 Atomic orbital electron populations 1.22095 0.77131 1.04584 1.03394 1.47914 1.08504 1.05335 1.72600 1.21536 0.97462 0.84795 0.97046 1.21812 1.00700 0.96702 0.96833 1.21443 1.00432 0.96649 0.96179 1.21422 1.00181 0.95377 0.97515 1.21674 1.00710 0.98121 0.95048 1.20853 0.93981 0.85938 0.96832 1.42776 1.69034 1.25046 1.03902 1.19079 1.29029 1.02827 0.86419 0.92879 1.25616 1.01046 0.98522 1.00692 1.69899 1.46470 1.20226 1.26782 0.85312 0.77516 0.78621 0.79753 1.19941 1.21946 1.17727 1.20167 0.86985 0.85641 0.74733 1.90687 1.15992 1.87915 1.51727 1.22526 1.03147 0.89319 1.05389 0.82987 1.23101 0.98986 0.96164 0.99420 1.21447 0.99428 1.00050 0.88393 1.21886 0.94043 0.98313 1.00552 1.22864 0.92224 0.99109 0.88060 1.87872 1.40808 1.67644 1.35754 1.22496 0.88044 0.91697 0.98475 1.21870 0.97900 1.00991 0.95837 0.90715 0.89868 0.89618 0.87968 0.92036 0.93982 0.90732 0.90305 0.92494 0.92755 0.91246 0.91180 0.92219 0.96563 0.95814 0.80005 0.93206 0.85191 0.89803 0.87707 0.90078 0.87047 0.92072 0.89165 0.93172 0.90660 0.91901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.39 10.00 127.77 1.28 1.67 16 2 N -0.61 -8.46 2.87 -846.75 -2.43 -10.90 16 3 C 0.11 1.75 5.41 86.38 0.47 2.21 16 4 C -0.12 -2.08 5.54 30.59 0.17 -1.91 16 5 C -0.11 -2.03 5.21 30.59 0.16 -1.88 16 6 C -0.11 -2.50 5.21 30.59 0.16 -2.34 16 7 C -0.12 -3.49 5.33 30.59 0.16 -3.33 16 8 C 0.15 6.02 6.26 86.38 0.54 6.56 16 9 N -0.76 -37.74 5.41 -343.45 -1.86 -39.60 16 10 C -0.24 -14.59 10.47 84.03 0.88 -13.71 16 11 H 0.05 3.49 8.06 -2.91 -0.02 3.47 16 12 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 13 N -0.98 -64.77 13.97 21.65 0.30 -64.47 16 14 Si 0.96 46.65 27.74 68.60 1.90 48.55 16 15 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 16 H -0.29 -14.25 7.11 99.48 0.71 -13.55 16 17 H -0.25 -11.11 6.52 99.48 0.65 -10.47 16 18 C 0.54 9.90 6.38 87.66 0.56 10.45 16 19 O -0.58 -16.17 14.62 -3.05 -0.04 -16.22 16 20 C -0.18 -2.11 4.53 -11.61 -0.05 -2.17 16 21 H 0.15 0.80 7.20 -2.39 -0.02 0.78 16 22 C -0.14 -1.70 9.52 30.51 0.29 -1.41 16 23 C -0.09 -1.09 2.03 -52.21 -0.11 -1.19 16 24 C -0.11 -0.76 5.92 30.79 0.18 -0.57 16 25 C 0.05 0.46 6.84 72.09 0.49 0.95 16 26 O -0.40 -6.58 10.69 -148.98 -1.59 -8.17 16 27 C 0.07 1.13 6.85 72.09 0.49 1.63 16 28 C -0.13 -2.17 5.58 30.79 0.17 -2.00 16 29 H 0.07 0.21 8.14 -2.39 -0.02 0.19 16 30 H 0.08 0.28 6.52 -2.39 -0.02 0.27 16 31 H 0.09 0.34 8.07 -2.39 -0.02 0.32 16 32 H 0.10 1.05 8.07 -2.39 -0.02 1.04 16 33 H 0.06 1.25 7.42 -2.39 -0.02 1.23 16 34 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 36 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 38 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 39 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.02 0.96 8.14 -2.39 -0.02 0.95 16 44 H 0.37 17.07 5.53 -92.71 -0.51 16.56 16 45 H 0.26 16.14 8.31 -92.71 -0.77 15.37 16 46 H 0.13 0.87 8.14 -2.38 -0.02 0.85 16 47 H 0.08 1.49 7.67 -2.39 -0.02 1.47 16 48 H 0.10 0.17 8.08 -2.39 -0.02 0.16 16 49 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 50 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 51 H 0.06 0.38 8.04 -2.39 -0.02 0.36 16 52 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 53 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 54 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 55 H 0.06 1.40 5.99 -2.39 -0.01 1.38 16 Total: -1.00 -79.74 429.97 2.86 -76.88 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: 0.26 Total: 24.60 kcal Atomic # 6 Polarization: -16.99 SS G_CDS: 6.32 Total: -10.68 kcal Atomic # 7 Polarization: -110.98 SS G_CDS: -3.99 Total: -114.97 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -1.64 Total: -24.39 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 1.90 Total: 48.55 kcal Total: -79.74 2.86 -76.88 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691454959.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.353 kcal (2) G-P(sol) polarization free energy of solvation -79.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds