Wall clock time and date at job start Tue Mar 31 2020 22:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36938 * 119.99492 * 2 1 4 4 H 1.08001 * 119.99406 * 204.04880 * 3 2 1 5 5 C 1.38803 * 120.00242 * 24.03825 * 3 2 1 6 6 N 1.31617 * 120.00511 * 14.44423 * 5 3 2 7 7 Si 1.86805 * 120.00051 * 194.44333 * 5 3 2 8 8 H 1.48508 * 109.46962 * 0.02562 * 7 5 3 9 9 H 1.48494 * 109.47451 * 119.99993 * 7 5 3 10 10 H 1.48494 * 109.47483 * 240.00362 * 7 5 3 11 11 C 1.46497 * 120.00028 * 179.97438 * 2 1 3 12 12 C 1.53004 * 109.47093 * 270.00058 * 11 2 1 13 13 O 1.42904 * 109.46744 * 65.00554 * 12 11 2 14 14 C 1.42899 * 113.99341 * 179.97438 * 13 12 11 15 15 C 1.53001 * 109.46734 * 179.97438 * 14 13 12 16 16 N 1.46509 * 109.47157 * 65.00153 * 15 14 13 17 17 C 1.46496 * 119.99881 * 89.99496 * 16 15 14 18 18 C 1.34774 * 119.99682 * 270.27660 * 16 15 14 19 19 O 1.21276 * 120.00445 * 2.62133 * 18 16 15 20 20 C 1.50706 * 119.99625 * 182.61746 * 18 16 15 21 21 C 1.52996 * 112.84613 * 171.06019 * 20 18 16 22 22 C 1.53777 * 113.61921 * 47.16809 * 21 20 18 23 23 C 1.53779 * 87.08556 * 220.02031 * 22 21 20 24 24 C 1.53781 * 87.08098 * 25.43003 * 23 22 21 25 25 C 1.53783 * 113.61248 * 39.86876 * 20 18 16 26 26 C 1.53955 * 87.02008 * 220.04425 * 25 20 18 27 27 C 1.53779 * 113.61586 * 302.26134 * 20 18 16 28 28 H 1.09000 * 109.47115 * 272.60002 * 1 2 3 29 29 H 1.08998 * 109.47209 * 32.60499 * 1 2 3 30 30 H 1.09008 * 109.46668 * 152.60280 * 1 2 3 31 31 H 0.96997 * 120.00521 * 179.97438 * 6 5 3 32 32 H 1.09000 * 109.46807 * 150.00553 * 11 2 1 33 33 H 1.08995 * 109.47438 * 30.00236 * 11 2 1 34 34 H 1.09000 * 109.47166 * 304.99962 * 12 11 2 35 35 H 1.08998 * 109.46520 * 185.00085 * 12 11 2 36 36 H 1.08994 * 109.47686 * 60.00091 * 14 13 12 37 37 H 1.09000 * 109.47308 * 299.99629 * 14 13 12 38 38 H 1.08994 * 109.47284 * 305.00219 * 15 14 13 39 39 H 1.09005 * 109.47133 * 184.99587 * 15 14 13 40 40 H 1.09002 * 109.46820 * 84.26715 * 17 16 15 41 41 H 1.09004 * 109.47328 * 204.26552 * 17 16 15 42 42 H 1.08998 * 109.47605 * 324.26776 * 17 16 15 43 43 H 1.09000 * 112.84728 * 178.47655 * 21 20 18 44 44 H 1.09004 * 113.61187 * 334.57137 * 22 21 20 45 45 H 1.09003 * 113.61638 * 105.46158 * 22 21 20 46 46 H 1.09002 * 113.60662 * 270.88122 * 23 22 21 47 47 H 1.08995 * 113.69102 * 139.99508 * 23 22 21 48 48 H 1.08999 * 113.61213 * 220.02319 * 24 23 22 49 49 H 1.08996 * 113.69303 * 89.12911 * 24 23 22 50 50 H 1.09005 * 113.61728 * 334.56408 * 25 20 18 51 51 H 1.09000 * 113.61627 * 105.46443 * 25 20 18 52 52 H 1.09000 * 113.53546 * 270.81578 * 26 25 20 53 53 H 1.08991 * 113.74614 * 139.94186 * 26 25 20 54 54 H 1.09004 * 113.60956 * 254.52563 * 27 20 18 55 55 H 1.08996 * 113.61618 * 25.42700 * 27 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1593 1.2266 -0.3812 5 6 1.5458 2.3359 0.4896 6 7 0.4454 2.2474 1.2063 7 14 2.2951 4.0092 0.1315 8 1 3.5208 3.8374 -0.6892 9 1 1.3152 4.8416 -0.6115 10 1 2.6447 4.6789 1.4099 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7097 1.4433 13 8 1.2060 -1.9927 2.0822 14 6 1.3325 -2.4161 3.4412 15 6 -0.0566 -2.6890 4.0216 16 7 -0.6662 -3.8204 3.3183 17 6 -0.4613 -5.1850 3.8102 18 6 -1.4106 -3.6063 2.2154 19 8 -1.5369 -2.4823 1.7777 20 6 -2.0862 -4.7637 1.5259 21 6 -3.0577 -4.3180 0.4313 22 6 -2.4739 -3.2566 -0.5159 23 6 -3.8530 -2.5772 -0.4777 24 6 -4.0557 -3.2431 0.8936 25 6 -2.6836 -5.7956 2.4971 26 6 -2.1734 -6.8806 1.5313 27 6 -1.1126 -5.8651 1.0745 28 1 -0.3633 0.0466 1.0266 29 1 -0.3633 0.8657 -0.5537 30 1 -0.3633 -0.9125 -0.4729 31 1 0.0237 3.0510 1.5488 32 1 3.1500 -1.1385 -0.5132 33 1 1.6085 -2.0286 -0.5129 34 1 2.9642 -0.9122 1.9820 35 1 3.0733 -2.6057 1.4449 36 1 1.8210 -1.6335 4.0216 37 1 1.9298 -3.3268 3.4839 38 1 -0.6821 -1.8049 3.8982 39 1 0.0327 -2.9258 5.0818 40 1 -1.1872 -5.4014 4.5941 41 1 -0.5917 -5.8906 2.9896 42 1 0.5471 -5.2786 4.2130 43 1 -3.5265 -5.1556 -0.0852 44 1 -1.6804 -2.6595 -0.0665 45 1 -2.2065 -3.6472 -1.4978 46 1 -4.5388 -2.9382 -1.2441 47 1 -3.8041 -1.4893 -0.4319 48 1 -5.0654 -3.6228 1.0495 49 1 -3.6952 -2.6433 1.7293 50 1 -2.1944 -5.8130 3.4710 51 1 -3.7702 -5.7496 2.5689 52 1 -2.8904 -7.1428 0.7533 53 1 -1.7551 -7.7531 2.0329 54 1 -0.9330 -5.8752 -0.0006 55 1 -0.1932 -5.9015 1.6587 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691600166.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:28 Heat of formation + Delta-G solvation = 11.785307 kcal Electronic energy + Delta-G solvation = -33128.445802 eV Core-core repulsion = 29169.139166 eV Total energy + Delta-G solvation = -3959.306636 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.42772 -39.37455 -38.55521 -38.40432 -37.07819 -35.87322 -33.44898 -31.33789 -29.59627 -28.82555 -27.80195 -27.22587 -27.04490 -25.84134 -25.35696 -24.78568 -23.26835 -22.15002 -20.91352 -20.64226 -19.72532 -18.74473 -17.52089 -17.42122 -16.95784 -16.88587 -16.60098 -16.36597 -16.12019 -15.91373 -15.40281 -15.18775 -15.13541 -14.90398 -14.80311 -14.46784 -13.99519 -13.64933 -13.55442 -13.31881 -13.15154 -13.06706 -12.88517 -12.83752 -12.74404 -12.62645 -12.46873 -12.44659 -12.33021 -12.23736 -12.10750 -11.99102 -11.77026 -11.66439 -11.45249 -11.36860 -11.28976 -10.78423 -10.62048 -10.59613 -10.29860 -9.85085 -9.40792 -8.70739 -7.77106 -5.27127 1.42826 1.44788 1.55562 1.93035 2.21293 2.51610 3.01560 3.34026 3.53198 3.56607 3.68883 3.75891 3.92626 3.93894 4.02646 4.09566 4.17994 4.19759 4.23816 4.30241 4.40648 4.43886 4.49678 4.54506 4.57396 4.67466 4.68698 4.73495 4.77001 4.84670 4.87676 4.91480 4.93805 4.98429 5.00204 5.03452 5.05169 5.14654 5.15935 5.20969 5.22216 5.26230 5.29348 5.36010 5.51851 5.57071 5.65424 5.74798 5.89955 5.93175 6.35343 6.59756 6.69302 7.17987 7.61861 7.91620 8.40905 9.25757 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014392 B = 0.003868 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.012185 B = 7236.591245 C = 8158.434045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.220 3.780 2 N -0.608 5.608 3 C -0.266 4.266 4 H 0.073 0.927 5 C -0.054 4.054 6 N -0.933 5.933 7 Si 0.967 3.033 8 H -0.262 1.262 9 H -0.294 1.294 10 H -0.292 1.292 11 C 0.151 3.849 12 C 0.053 3.947 13 O -0.373 6.373 14 C 0.043 3.957 15 C 0.127 3.873 16 N -0.615 5.615 17 C 0.042 3.958 18 C 0.511 3.489 19 O -0.538 6.538 20 C -0.097 4.097 21 C -0.059 4.059 22 C -0.152 4.152 23 C -0.140 4.140 24 C -0.125 4.125 25 C -0.149 4.149 26 C -0.118 4.118 27 C -0.136 4.136 28 H 0.001 0.999 29 H -0.005 1.005 30 H 0.006 0.994 31 H 0.243 0.757 32 H 0.069 0.931 33 H 0.046 0.954 34 H 0.016 0.984 35 H 0.056 0.944 36 H 0.037 0.963 37 H 0.063 0.937 38 H 0.047 0.953 39 H 0.122 0.878 40 H 0.078 0.922 41 H 0.112 0.888 42 H 0.077 0.923 43 H 0.115 0.885 44 H 0.084 0.916 45 H 0.054 0.946 46 H 0.092 0.908 47 H 0.035 0.965 48 H 0.076 0.924 49 H 0.058 0.942 50 H 0.121 0.879 51 H 0.072 0.928 52 H 0.089 0.911 53 H 0.095 0.905 54 H 0.066 0.934 55 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.876 -25.201 5.824 26.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.331 5.331 3 C -0.396 4.396 4 H 0.090 0.910 5 C -0.250 4.250 6 N -0.579 5.579 7 Si 0.796 3.204 8 H -0.186 1.186 9 H -0.221 1.221 10 H -0.219 1.219 11 C 0.025 3.975 12 C -0.026 4.026 13 O -0.292 6.292 14 C -0.035 4.035 15 C 0.004 3.996 16 N -0.349 5.349 17 C -0.098 4.098 18 C 0.299 3.701 19 O -0.414 6.414 20 C -0.100 4.100 21 C -0.078 4.078 22 C -0.189 4.189 23 C -0.177 4.177 24 C -0.163 4.163 25 C -0.186 4.186 26 C -0.155 4.155 27 C -0.173 4.173 28 H 0.020 0.980 29 H 0.014 0.986 30 H 0.024 0.976 31 H 0.052 0.948 32 H 0.088 0.912 33 H 0.064 0.936 34 H 0.035 0.965 35 H 0.074 0.926 36 H 0.055 0.945 37 H 0.081 0.919 38 H 0.065 0.935 39 H 0.140 0.860 40 H 0.097 0.903 41 H 0.130 0.870 42 H 0.095 0.905 43 H 0.133 0.867 44 H 0.102 0.898 45 H 0.072 0.928 46 H 0.111 0.889 47 H 0.054 0.946 48 H 0.094 0.906 49 H 0.077 0.923 50 H 0.138 0.862 51 H 0.091 0.909 52 H 0.108 0.892 53 H 0.114 0.886 54 H 0.085 0.915 55 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -5.221 -24.469 5.544 25.627 hybrid contribution 0.586 1.934 0.140 2.026 sum -4.636 -22.535 5.684 23.698 Atomic orbital electron populations 1.20025 0.82555 0.93248 0.96706 1.44066 1.01975 1.01398 1.85691 1.19596 0.99305 0.86890 1.33792 0.90973 1.25860 0.98877 1.02021 0.98202 1.70352 1.22562 1.27205 1.37813 0.85203 0.77990 0.80093 0.77157 1.18626 1.22068 1.21884 1.21004 0.96190 0.87189 0.93110 1.23143 0.86104 0.96981 0.96397 1.88166 1.29108 1.87354 1.24547 1.22963 0.98179 0.97970 0.84417 1.21354 0.92095 0.89779 0.96406 1.47776 1.51130 1.07946 1.28095 1.22936 1.02646 0.82316 1.01949 1.21005 0.78492 0.90440 0.80130 1.90738 1.61247 1.26651 1.62750 1.22013 0.98047 0.92244 0.97728 1.22081 0.94920 0.96254 0.94528 1.23236 0.98219 0.98706 0.98731 1.22698 0.97986 0.98749 0.98305 1.22769 0.98889 0.97720 0.96886 1.23773 1.01890 0.93590 0.99331 1.22810 0.97353 0.96508 0.98848 1.23235 0.97790 0.94383 1.01917 0.98045 0.98602 0.97596 0.94759 0.91244 0.93576 0.96534 0.92580 0.94509 0.91941 0.93453 0.86013 0.90343 0.87041 0.90463 0.86718 0.89828 0.92757 0.88917 0.94633 0.90590 0.92342 0.86176 0.90879 0.89249 0.88605 0.91500 0.88133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.22 13.06 8.63 127.77 1.10 14.16 16 2 N -0.61 -34.37 2.88 -726.93 -2.09 -36.46 16 3 C -0.27 -15.80 9.63 84.03 0.81 -14.99 16 4 H 0.07 4.09 7.86 -2.91 -0.02 4.06 16 5 C -0.05 -3.30 5.05 84.86 0.43 -2.87 16 6 N -0.93 -60.87 10.88 21.65 0.24 -60.64 16 7 Si 0.97 48.14 29.58 68.60 2.03 50.17 16 8 H -0.26 -12.17 7.11 99.48 0.71 -11.47 16 9 H -0.29 -14.66 7.11 99.48 0.71 -13.95 16 10 H -0.29 -14.38 7.11 99.48 0.71 -13.68 16 11 C 0.15 6.91 6.12 86.38 0.53 7.43 16 12 C 0.05 2.21 6.28 71.98 0.45 2.66 16 13 O -0.37 -16.08 8.55 -138.10 -1.18 -17.26 16 14 C 0.04 1.39 6.28 71.98 0.45 1.85 16 15 C 0.13 3.66 5.88 86.38 0.51 4.16 16 16 N -0.62 -15.43 2.86 -846.74 -2.42 -17.85 16 17 C 0.04 0.57 8.21 127.77 1.05 1.62 16 18 C 0.51 15.81 6.05 87.66 0.53 16.34 16 19 O -0.54 -22.91 10.32 7.87 0.08 -22.83 16 20 C -0.10 -2.16 0.79 -52.40 -0.04 -2.20 16 21 C -0.06 -1.46 3.14 -10.27 -0.03 -1.49 16 22 C -0.15 -4.94 7.24 31.12 0.23 -4.72 16 23 C -0.14 -4.32 8.08 31.12 0.25 -4.07 16 24 C -0.13 -3.54 7.26 31.12 0.23 -3.31 16 25 C -0.15 -2.11 6.69 31.18 0.21 -1.90 16 26 C -0.12 -1.25 7.42 31.18 0.23 -1.01 16 27 C -0.14 -2.31 6.66 31.12 0.21 -2.10 16 28 H 0.00 0.08 7.46 -2.39 -0.02 0.06 16 29 H 0.00 -0.31 7.28 -2.39 -0.02 -0.33 16 30 H 0.01 0.32 7.20 -2.38 -0.02 0.30 16 31 H 0.24 15.39 8.31 -92.71 -0.77 14.62 16 32 H 0.07 2.89 8.04 -2.39 -0.02 2.87 16 33 H 0.05 2.03 7.87 -2.39 -0.02 2.01 16 34 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.05 1.82 7.47 -2.39 -0.02 1.80 16 39 H 0.12 2.41 8.07 -2.38 -0.02 2.39 16 40 H 0.08 0.75 6.89 -2.39 -0.02 0.73 16 41 H 0.11 1.30 2.41 -2.39 -0.01 1.29 16 42 H 0.08 0.84 8.11 -2.39 -0.02 0.82 16 43 H 0.11 2.18 7.56 -2.39 -0.02 2.16 16 44 H 0.08 3.57 4.54 -2.39 -0.01 3.55 16 45 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 46 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 47 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 48 H 0.08 1.73 8.14 -2.39 -0.02 1.72 16 49 H 0.06 2.06 6.13 -2.39 -0.01 2.05 16 50 H 0.12 1.39 3.70 -2.38 -0.01 1.38 16 51 H 0.07 1.04 8.10 -2.39 -0.02 1.02 16 52 H 0.09 0.87 7.72 -2.39 -0.02 0.86 16 53 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 54 H 0.07 1.26 8.10 -2.39 -0.02 1.24 16 55 H 0.10 1.60 5.56 -2.39 -0.01 1.59 16 Total: -1.00 -81.67 407.46 4.65 -77.02 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: 0.86 Total: 18.29 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: 7.14 Total: 9.56 kcal Atomic # 7 Polarization: -110.67 SS G_CDS: -4.28 Total: -114.95 kcal Atomic # 8 Polarization: -38.99 SS G_CDS: -1.10 Total: -40.09 kcal Atomic # 14 Polarization: 48.14 SS G_CDS: 2.03 Total: 50.17 kcal Total: -81.67 4.65 -77.02 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691600166.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.806 kcal (2) G-P(sol) polarization free energy of solvation -81.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds