Wall clock time and date at job start Tue Mar 31 2020 22:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42904 * 113.99910 * 2 1 4 4 C 1.53003 * 109.46904 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47087 * 185.15525 * 4 3 2 6 6 C 1.50709 * 110.43504 * 303.51053 * 5 4 3 7 7 O 1.21281 * 119.99277 * 115.45796 * 6 5 4 8 8 N 1.34770 * 120.00182 * 295.46167 * 6 5 4 9 9 C 1.47018 * 125.64736 * 5.71416 * 8 6 5 10 10 C 1.54327 * 107.27139 * 181.10671 * 9 8 6 11 11 C 1.55153 * 102.94199 * 22.18756 * 10 9 8 12 12 H 1.09000 * 111.00432 * 82.61462 * 11 10 9 13 13 C 1.52999 * 111.00368 * 206.42715 * 11 10 9 14 14 N 1.46507 * 109.47141 * 293.54553 * 13 11 10 15 15 C 1.46489 * 120.00124 * 270.00372 * 14 13 11 16 16 C 1.36931 * 119.99730 * 90.00141 * 14 13 11 17 17 H 1.08002 * 120.00339 * 346.74092 * 16 14 13 18 18 C 1.38811 * 120.00334 * 166.73883 * 16 14 13 19 19 N 1.31621 * 119.99696 * 323.30645 * 18 16 14 20 20 Si 1.86794 * 120.00235 * 143.02413 * 18 16 14 21 21 H 1.48500 * 109.47505 * 180.28078 * 20 18 16 22 22 H 1.48504 * 109.47350 * 300.28048 * 20 18 16 23 23 H 1.48502 * 109.47127 * 60.27847 * 20 18 16 24 24 C 1.47420 * 125.64778 * 185.76209 * 8 6 5 25 25 C 1.54888 * 110.48668 * 66.05407 * 5 4 3 26 26 C 1.55234 * 102.58850 * 156.67594 * 25 5 4 27 27 C 1.54262 * 104.23273 * 322.08421 * 26 25 5 28 28 C 1.53876 * 106.59851 * 23.60965 * 27 26 25 29 29 H 1.08998 * 109.47492 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47140 * 299.99831 * 1 2 3 31 31 H 1.08996 * 109.47425 * 59.99691 * 1 2 3 32 32 H 1.08999 * 109.47366 * 59.99917 * 3 2 1 33 33 H 1.08995 * 109.47042 * 299.99707 * 3 2 1 34 34 H 1.09001 * 109.46999 * 65.15775 * 4 3 2 35 35 H 1.09000 * 109.47436 * 305.15816 * 4 3 2 36 36 H 1.08995 * 109.88626 * 61.68491 * 9 8 6 37 37 H 1.09006 * 110.01525 * 300.59261 * 9 8 6 38 38 H 1.09004 * 110.71433 * 263.82408 * 10 9 8 39 39 H 1.08997 * 110.72258 * 140.55439 * 10 9 8 40 40 H 1.08997 * 109.46922 * 173.55206 * 13 11 10 41 41 H 1.09001 * 109.47135 * 53.54562 * 13 11 10 42 42 H 1.09007 * 109.46940 * 271.90067 * 15 14 13 43 43 H 1.09004 * 109.47510 * 31.89732 * 15 14 13 44 44 H 1.09000 * 109.47268 * 151.90586 * 15 14 13 45 45 H 0.96997 * 119.99814 * 354.01853 * 19 18 16 46 46 H 1.08998 * 110.36537 * 36.99120 * 24 8 6 47 47 H 1.08997 * 110.36854 * 274.66079 * 24 8 6 48 48 H 1.09005 * 110.75517 * 275.06379 * 25 5 4 49 49 H 1.09002 * 110.75898 * 38.43504 * 25 5 4 50 50 H 1.09004 * 110.47011 * 203.38985 * 26 25 5 51 51 H 1.09001 * 110.58100 * 80.83129 * 26 25 5 52 52 H 1.08998 * 110.03293 * 264.32343 * 27 26 25 53 53 H 1.09001 * 110.03233 * 142.89684 * 27 26 25 54 54 H 1.08996 * 110.03079 * 240.71595 * 28 27 26 55 55 H 1.09006 * 110.03332 * 119.28242 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1573 2.5765 0.1290 6 6 3.6668 3.4770 -0.9755 7 8 2.9941 4.4506 -0.7102 8 7 3.9755 3.2002 -2.2578 9 6 4.6771 1.9976 -2.7298 10 6 4.8318 2.1282 -4.2598 11 6 4.7118 3.6575 -4.4919 12 1 5.6645 4.1559 -4.3127 13 6 4.1945 3.9596 -5.8997 14 7 5.1938 3.5432 -6.8869 15 6 6.2243 4.4860 -7.3285 16 6 5.1644 2.2727 -7.3968 17 1 4.5533 1.5162 -6.9270 18 6 5.9201 1.9568 -8.5175 19 7 6.0657 2.8394 -9.4830 20 14 6.7368 0.2823 -8.6517 21 1 7.4856 0.1978 -9.9314 22 1 7.6754 0.0967 -7.5160 23 1 5.6989 -0.7791 -8.6145 24 6 3.6665 4.0538 -3.4194 25 6 3.8308 3.1894 1.5134 26 6 4.9720 4.2245 1.7029 27 6 6.2150 3.5320 1.1071 28 6 5.6971 2.4841 0.1064 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8631 0.7257 -0.9335 35 1 3.8513 0.5659 0.8393 36 1 4.0923 1.1094 -2.4908 37 1 5.6596 1.9311 -2.2623 38 1 4.0322 1.5959 -4.7750 39 1 5.8079 1.7647 -4.5811 40 1 4.0111 5.0296 -5.9976 41 1 3.2661 3.4146 -6.0704 42 1 5.8509 5.0621 -8.1753 43 1 6.4729 5.1622 -6.5104 44 1 7.1159 3.9355 -7.6286 45 1 5.5760 3.6761 -9.4532 46 1 3.7735 5.1060 -3.1560 47 1 2.6579 3.8527 -3.7803 48 1 2.8582 3.6813 1.4984 49 1 3.8673 2.4271 2.2917 50 1 5.1234 4.4355 2.7615 51 1 4.7501 5.1432 1.1598 52 1 6.7851 3.0437 1.8975 53 1 6.8392 4.2629 0.5929 54 1 6.0158 1.4873 0.4111 55 1 6.0698 2.7064 -0.8935 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691999908.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:54 Heat of formation + Delta-G solvation = -83.216791 kcal Electronic energy + Delta-G solvation = -31771.307514 eV Core-core repulsion = 27807.881277 eV Total energy + Delta-G solvation = -3963.426236 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.99168 -39.60008 -38.79455 -37.97723 -37.34289 -34.26107 -33.46991 -32.02398 -30.49300 -29.64581 -28.96712 -28.10338 -27.03671 -26.70228 -24.79073 -23.72827 -23.09259 -22.19510 -21.37654 -21.09107 -19.69368 -19.40128 -17.71753 -17.61403 -17.34198 -16.92662 -16.87801 -16.19333 -16.02481 -15.95858 -15.76453 -15.48477 -15.31474 -14.89812 -14.80014 -14.61146 -14.47744 -14.03437 -13.76188 -13.69345 -13.47100 -13.22430 -13.17816 -12.74434 -12.64638 -12.54832 -12.45617 -12.37251 -12.23410 -12.21628 -12.02774 -11.96557 -11.87345 -11.82199 -11.75012 -11.61622 -11.48354 -11.33925 -11.29193 -10.75068 -10.66414 -10.29626 -9.67804 -8.98650 -8.26091 -5.16890 1.54959 1.62712 1.68683 1.87204 1.93062 2.66766 2.70958 3.16401 3.29472 3.41320 3.53960 3.61995 3.71627 3.86774 3.93708 4.01092 4.05806 4.15948 4.23132 4.28868 4.33063 4.39489 4.43904 4.46782 4.48595 4.50347 4.54102 4.56952 4.64416 4.65514 4.73395 4.77318 4.78081 4.80063 4.85957 4.91384 4.96916 5.00663 5.05011 5.07977 5.12821 5.15038 5.16934 5.18409 5.26115 5.32746 5.37865 5.42798 5.47925 5.90589 6.10857 6.41770 6.50447 7.05761 7.08706 7.86839 8.24610 9.03681 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012632 B = 0.003064 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.977567 B = 9135.510715 C = 9911.307024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.406 6.406 3 C 0.062 3.938 4 C -0.106 4.106 5 C -0.071 4.071 6 C 0.538 3.462 7 O -0.580 6.580 8 N -0.613 5.613 9 C 0.095 3.905 10 C -0.105 4.105 11 C -0.102 4.102 12 H 0.071 0.929 13 C 0.164 3.836 14 N -0.616 5.616 15 C 0.145 3.855 16 C -0.351 4.351 17 H 0.066 0.934 18 C -0.074 4.074 19 N -0.938 5.938 20 Si 1.094 2.906 21 H -0.300 1.300 22 H -0.279 1.279 23 H -0.277 1.277 24 C 0.117 3.883 25 C -0.101 4.101 26 C -0.125 4.125 27 C -0.122 4.122 28 C -0.118 4.118 29 H 0.103 0.897 30 H 0.051 0.949 31 H 0.037 0.963 32 H 0.057 0.943 33 H 0.024 0.976 34 H 0.084 0.916 35 H 0.106 0.894 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.045 0.955 41 H 0.043 0.957 42 H -0.010 1.010 43 H 0.045 0.955 44 H 0.030 0.970 45 H 0.254 0.746 46 H 0.066 0.934 47 H 0.062 0.938 48 H 0.060 0.940 49 H 0.100 0.900 50 H 0.083 0.917 51 H 0.041 0.959 52 H 0.089 0.911 53 H 0.055 0.945 54 H 0.103 0.897 55 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.690 -3.709 25.449 25.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.325 6.325 3 C -0.014 4.014 4 C -0.143 4.143 5 C -0.074 4.074 6 C 0.328 3.672 7 O -0.461 6.461 8 N -0.346 5.346 9 C -0.027 4.027 10 C -0.143 4.143 11 C -0.123 4.123 12 H 0.089 0.911 13 C 0.037 3.963 14 N -0.340 5.340 15 C -0.001 4.001 16 C -0.480 4.480 17 H 0.084 0.916 18 C -0.271 4.271 19 N -0.580 5.580 20 Si 0.920 3.080 21 H -0.227 1.227 22 H -0.205 1.205 23 H -0.203 1.203 24 C -0.006 4.006 25 C -0.138 4.138 26 C -0.162 4.162 27 C -0.160 4.160 28 C -0.155 4.155 29 H 0.121 0.879 30 H 0.070 0.930 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.043 0.957 34 H 0.102 0.898 35 H 0.125 0.875 36 H 0.102 0.898 37 H 0.109 0.891 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.008 0.992 43 H 0.063 0.937 44 H 0.049 0.951 45 H 0.064 0.936 46 H 0.085 0.915 47 H 0.081 0.919 48 H 0.079 0.921 49 H 0.118 0.882 50 H 0.102 0.898 51 H 0.060 0.940 52 H 0.107 0.893 53 H 0.074 0.926 54 H 0.121 0.879 55 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.950 -4.284 24.727 25.268 hybrid contribution -1.549 1.719 0.007 2.314 sum -4.499 -2.565 24.735 25.271 Atomic orbital electron populations 1.22918 0.79778 1.03986 1.00425 1.87810 1.21195 1.28015 1.95502 1.22540 0.94756 0.84417 0.99705 1.21705 0.92397 0.94703 1.05541 1.21562 0.97925 0.94033 0.93856 1.20643 0.78624 0.85464 0.82444 1.90646 1.40651 1.31565 1.83197 1.48566 1.57632 1.22673 1.05714 1.22569 0.97947 0.87225 0.94963 1.22437 1.02812 0.95784 0.93234 1.22776 0.97966 0.96705 0.94884 0.91096 1.20684 0.90902 0.97368 0.87322 1.44160 1.30925 1.11642 1.47257 1.20806 0.91586 0.91968 0.95740 1.20110 1.30169 0.87009 1.10724 0.91621 1.26731 1.01814 1.07369 0.91189 1.70927 1.46314 1.11081 1.29692 0.83134 0.76596 0.72763 0.75459 1.22704 1.20529 1.20306 1.22122 0.98465 0.94822 0.85190 1.22556 0.98967 0.98550 0.93771 1.22394 0.94734 0.97662 1.01451 1.22146 0.97478 0.97606 0.98745 1.22441 0.90534 1.01940 1.00593 0.87861 0.93041 0.94448 0.92504 0.95746 0.89798 0.87543 0.89849 0.89050 0.91943 0.90555 0.93661 0.93887 0.99163 0.93654 0.95129 0.93646 0.91547 0.91947 0.92147 0.88159 0.89816 0.94019 0.89277 0.92578 0.87850 0.91427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 113.37 1.25 1.66 16 2 O -0.41 -8.74 10.70 -148.98 -1.59 -10.33 16 3 C 0.06 1.30 5.46 71.98 0.39 1.70 16 4 C -0.11 -1.84 4.34 30.59 0.13 -1.71 16 5 C -0.07 -1.35 0.27 -51.85 -0.01 -1.36 16 6 C 0.54 14.54 5.11 87.66 0.45 14.99 16 7 O -0.58 -19.80 15.66 -3.03 -0.05 -19.84 16 8 N -0.61 -16.37 3.20 -811.80 -2.60 -18.97 16 9 C 0.09 2.21 5.40 86.73 0.47 2.68 16 10 C -0.10 -3.14 5.25 31.78 0.17 -2.97 16 11 C -0.10 -3.23 3.29 -9.40 -0.03 -3.26 16 12 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 13 C 0.16 6.26 5.21 86.38 0.45 6.71 16 14 N -0.62 -29.08 2.84 -726.94 -2.06 -31.15 16 15 C 0.14 6.74 8.99 127.77 1.15 7.89 16 16 C -0.35 -18.35 8.67 84.03 0.73 -17.62 16 17 H 0.07 3.38 7.18 -2.91 -0.02 3.36 16 18 C -0.07 -4.07 4.46 84.86 0.38 -3.69 16 19 N -0.94 -56.18 12.50 21.65 0.27 -55.91 16 20 Si 1.09 49.21 30.04 68.60 2.06 51.27 16 21 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 22 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 23 H -0.28 -11.61 7.11 99.48 0.71 -10.91 16 24 C 0.12 3.44 6.36 86.86 0.55 3.99 16 25 C -0.10 -1.79 4.70 32.01 0.15 -1.64 16 26 C -0.12 -2.20 6.55 31.79 0.21 -1.99 16 27 C -0.12 -1.85 6.80 31.32 0.21 -1.64 16 28 C -0.12 -1.85 5.26 31.32 0.16 -1.68 16 29 H 0.10 1.29 8.14 -2.39 -0.02 1.28 16 30 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.06 1.12 7.14 -2.39 -0.02 1.11 16 33 H 0.02 0.62 7.37 -2.39 -0.02 0.60 16 34 H 0.08 1.48 4.94 -2.39 -0.01 1.46 16 35 H 0.11 1.43 8.10 -2.39 -0.02 1.41 16 36 H 0.08 1.76 5.86 -2.39 -0.01 1.75 16 37 H 0.09 1.82 5.51 -2.38 -0.01 1.81 16 38 H 0.06 2.03 7.45 -2.39 -0.02 2.02 16 39 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 40 H 0.05 1.64 8.07 -2.39 -0.02 1.62 16 41 H 0.04 1.69 8.00 -2.39 -0.02 1.68 16 42 H -0.01 -0.48 7.07 -2.38 -0.02 -0.50 16 43 H 0.04 1.79 8.09 -2.38 -0.02 1.77 16 44 H 0.03 1.55 6.85 -2.39 -0.02 1.54 16 45 H 0.25 15.54 6.62 -92.71 -0.61 14.92 16 46 H 0.07 2.01 8.09 -2.39 -0.02 1.99 16 47 H 0.06 1.86 8.04 -2.39 -0.02 1.84 16 48 H 0.06 1.32 7.07 -2.38 -0.02 1.31 16 49 H 0.10 1.28 8.03 -2.39 -0.02 1.26 16 50 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 51 H 0.04 0.97 7.90 -2.39 -0.02 0.95 16 52 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 53 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 54 H 0.10 1.14 7.84 -2.39 -0.02 1.12 16 55 H 0.07 1.22 5.15 -2.38 -0.01 1.21 16 Total: -1.00 -67.41 408.90 3.84 -63.57 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: 1.00 Total: 19.31 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: 6.81 Total: 2.05 kcal Atomic # 7 Polarization: -101.63 SS G_CDS: -4.39 Total: -106.02 kcal Atomic # 8 Polarization: -28.53 SS G_CDS: -1.64 Total: -30.17 kcal Atomic # 14 Polarization: 49.21 SS G_CDS: 2.06 Total: 51.27 kcal Total: -67.41 3.84 -63.57 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691999908.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.648 kcal (2) G-P(sol) polarization free energy of solvation -67.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds