Wall clock time and date at job start Tue Mar 31 2020 22:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 114.00299 * 2 1 4 4 C 1.52997 * 109.46835 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.46902 * 185.04021 * 4 3 2 6 6 C 1.50702 * 110.43271 * 305.70662 * 5 4 3 7 7 O 1.21284 * 120.00261 * 118.72786 * 6 5 4 8 8 N 1.34772 * 119.99922 * 298.73215 * 6 5 4 9 9 C 1.47018 * 125.65188 * 354.98239 * 8 6 5 10 10 C 1.54368 * 107.29333 * 178.94360 * 9 8 6 11 11 C 1.55160 * 102.91677 * 337.86442 * 10 9 8 12 12 H 1.09003 * 111.00621 * 277.35592 * 11 10 9 13 13 C 1.53004 * 111.00313 * 153.54516 * 11 10 9 14 14 N 1.46498 * 109.47090 * 69.57998 * 13 11 10 15 15 C 1.46504 * 120.00031 * 90.00120 * 14 13 11 16 16 C 1.36936 * 120.00384 * 269.99996 * 14 13 11 17 17 H 1.08004 * 119.99698 * 334.80673 * 16 14 13 18 18 C 1.38814 * 120.00406 * 154.80352 * 16 14 13 19 19 N 1.31616 * 119.99869 * 4.43464 * 18 16 14 20 20 Si 1.86800 * 119.99828 * 184.42938 * 18 16 14 21 21 H 1.48496 * 109.47167 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46631 * 120.00392 * 20 18 16 23 23 H 1.48497 * 109.47017 * 239.99814 * 20 18 16 24 24 C 1.47428 * 125.64842 * 175.02495 * 8 6 5 25 25 C 1.54885 * 110.59883 * 68.32470 * 5 4 3 26 26 C 1.54886 * 102.74811 * 156.67892 * 25 5 4 27 27 C 1.54260 * 104.19570 * 322.05648 * 26 25 5 28 28 C 1.53873 * 106.59888 * 23.61005 * 27 26 25 29 29 H 1.08999 * 109.47154 * 59.99435 * 1 2 3 30 30 H 1.08998 * 109.47376 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46658 * 299.99699 * 1 2 3 32 32 H 1.08998 * 109.47100 * 60.00214 * 3 2 1 33 33 H 1.08997 * 109.47042 * 300.00286 * 3 2 1 34 34 H 1.08994 * 109.47270 * 65.04152 * 4 3 2 35 35 H 1.09000 * 109.47270 * 305.03174 * 4 3 2 36 36 H 1.08998 * 109.88311 * 298.40084 * 9 8 6 37 37 H 1.09006 * 109.87853 * 59.40457 * 9 8 6 38 38 H 1.09003 * 110.75991 * 219.50079 * 10 9 8 39 39 H 1.08993 * 110.70534 * 96.20225 * 10 9 8 40 40 H 1.09003 * 109.47288 * 309.57985 * 13 11 10 41 41 H 1.08997 * 109.47103 * 189.57952 * 13 11 10 42 42 H 1.08998 * 109.47202 * 264.76935 * 15 14 13 43 43 H 1.08992 * 109.47218 * 24.77108 * 15 14 13 44 44 H 1.09006 * 109.46961 * 144.77246 * 15 14 13 45 45 H 0.97005 * 120.00042 * 180.02562 * 19 18 16 46 46 H 1.09001 * 110.36552 * 85.25444 * 24 8 6 47 47 H 1.09003 * 110.46073 * 322.98527 * 24 8 6 48 48 H 1.09006 * 110.75428 * 274.99092 * 25 5 4 49 49 H 1.08996 * 110.76278 * 38.36531 * 25 5 4 50 50 H 1.09000 * 110.49297 * 203.37789 * 26 25 5 51 51 H 1.09008 * 110.48685 * 80.73596 * 26 25 5 52 52 H 1.09004 * 110.03386 * 264.32246 * 27 26 25 53 53 H 1.09005 * 110.03300 * 142.89376 * 27 26 25 54 54 H 1.09002 * 110.03573 * 240.71391 * 28 27 26 55 55 H 1.09000 * 110.07166 * 119.30819 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1845 -0.0006 5 6 4.1575 2.5766 0.1261 6 6 3.6259 3.4902 -0.9481 7 8 3.0105 4.4901 -0.6440 8 7 3.8342 3.1960 -2.2467 9 6 4.6468 2.0803 -2.7529 10 6 4.5746 2.1224 -4.2944 11 6 3.2691 2.9181 -4.5588 12 1 2.3960 2.2685 -4.4959 13 6 3.3243 3.6280 -5.9131 14 7 3.2632 2.6345 -6.9880 15 6 1.9668 2.2232 -7.5324 16 6 4.4178 2.0904 -7.4840 17 1 5.3470 2.6358 -7.4100 18 6 4.3939 0.8379 -8.0819 19 7 3.2490 0.2110 -8.2507 20 14 5.9867 0.0422 -8.6469 21 1 7.1258 0.9454 -8.3442 22 1 6.1754 -1.2474 -7.9350 23 1 5.9250 -0.2045 -10.1099 24 6 3.2856 3.9403 -3.3950 25 6 3.8810 3.1713 1.5292 26 6 5.0219 4.2061 1.6928 27 6 6.2453 3.5259 1.0445 28 6 5.6957 2.4898 0.0484 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.6887 1.8464 0.8900 33 1 1.6887 1.8464 -0.8899 34 1 3.8630 0.7237 -0.9325 35 1 3.8514 0.5676 0.8406 36 1 5.6803 2.1965 -2.4266 37 1 4.2469 1.1346 -2.3871 38 1 4.5024 1.1154 -4.7054 39 1 5.4363 2.6474 -4.7063 40 1 4.2547 4.1906 -5.9907 41 1 2.4788 4.3103 -6.0004 42 1 1.6343 1.3140 -7.0314 43 1 1.2364 3.0156 -7.3696 44 1 2.0652 2.0337 -8.6014 45 1 3.2323 -0.6645 -8.6682 46 1 3.9285 4.7853 -3.6415 47 1 2.2744 4.2846 -3.1780 48 1 2.9079 3.6618 1.5560 49 1 3.9469 2.3994 2.2959 50 1 5.2098 4.4033 2.7482 51 1 4.7769 5.1300 1.1688 52 1 6.8442 3.0289 1.8078 53 1 6.8489 4.2657 0.5188 54 1 6.0279 1.4900 0.3281 55 1 6.0326 2.7260 -0.9610 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691999909.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:58 Heat of formation + Delta-G solvation = -79.492248 kcal Electronic energy + Delta-G solvation = -31994.772607 eV Core-core repulsion = 28031.507879 eV Total energy + Delta-G solvation = -3963.264728 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.96792 -39.51392 -38.79049 -37.91864 -37.09374 -34.14726 -33.42711 -32.07269 -30.46859 -29.60804 -28.95613 -27.94365 -27.15899 -26.72905 -24.76602 -23.72295 -23.11998 -22.16541 -21.28931 -21.05887 -19.67235 -18.78657 -17.81202 -17.49669 -17.34525 -17.11330 -16.74088 -16.41516 -16.18677 -15.84375 -15.56970 -15.32309 -15.19319 -14.80915 -14.68244 -14.47954 -14.40936 -14.03321 -13.67108 -13.61022 -13.44746 -13.16462 -12.90746 -12.83974 -12.68563 -12.62359 -12.45728 -12.41716 -12.24213 -12.09641 -12.05082 -11.99824 -11.95374 -11.79423 -11.73757 -11.62885 -11.39813 -11.36191 -11.18556 -10.74172 -10.65914 -10.54293 -9.62463 -8.71440 -7.77391 -5.24563 1.48571 1.51366 1.58024 1.59873 1.97532 2.54633 2.66462 3.30628 3.37297 3.46889 3.58396 3.67068 3.78106 3.90728 3.96935 4.02860 4.12116 4.20293 4.26303 4.30627 4.36542 4.41509 4.44229 4.46293 4.51186 4.52144 4.59077 4.64362 4.67911 4.76916 4.79684 4.82476 4.86087 4.91852 4.95330 4.99789 5.02881 5.05098 5.08221 5.13412 5.18809 5.24505 5.28573 5.38191 5.42746 5.45342 5.50213 5.51598 5.70688 5.81470 6.09883 6.40420 6.54196 7.11673 7.22881 7.92879 8.38923 9.26822 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012035 B = 0.003300 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2325.926594 B = 8483.951076 C = 9116.302102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.407 6.407 3 C 0.063 3.937 4 C -0.106 4.106 5 C -0.071 4.071 6 C 0.538 3.462 7 O -0.580 6.580 8 N -0.613 5.613 9 C 0.095 3.905 10 C -0.101 4.101 11 C -0.105 4.105 12 H 0.051 0.949 13 C 0.163 3.837 14 N -0.617 5.617 15 C 0.181 3.819 16 C -0.244 4.244 17 H 0.073 0.927 18 C -0.047 4.047 19 N -0.940 5.940 20 Si 0.957 3.043 21 H -0.263 1.263 22 H -0.293 1.293 23 H -0.299 1.299 24 C 0.117 3.883 25 C -0.101 4.101 26 C -0.124 4.124 27 C -0.121 4.121 28 C -0.119 4.119 29 H 0.034 0.966 30 H 0.102 0.898 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.022 0.978 34 H 0.080 0.920 35 H 0.105 0.895 36 H 0.094 0.906 37 H 0.077 0.923 38 H 0.060 0.940 39 H 0.073 0.927 40 H 0.055 0.945 41 H 0.052 0.948 42 H -0.003 1.003 43 H 0.017 0.983 44 H 0.026 0.974 45 H 0.244 0.756 46 H 0.073 0.927 47 H 0.062 0.938 48 H 0.058 0.942 49 H 0.098 0.902 50 H 0.083 0.917 51 H 0.043 0.957 52 H 0.088 0.912 53 H 0.059 0.941 54 H 0.101 0.899 55 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.868 2.988 21.464 21.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.327 6.327 3 C -0.014 4.014 4 C -0.143 4.143 5 C -0.074 4.074 6 C 0.328 3.672 7 O -0.460 6.460 8 N -0.345 5.345 9 C -0.027 4.027 10 C -0.139 4.139 11 C -0.127 4.127 12 H 0.070 0.930 13 C 0.036 3.964 14 N -0.340 5.340 15 C 0.036 3.964 16 C -0.374 4.374 17 H 0.091 0.909 18 C -0.241 4.241 19 N -0.588 5.588 20 Si 0.786 3.214 21 H -0.187 1.187 22 H -0.220 1.220 23 H -0.226 1.226 24 C -0.006 4.006 25 C -0.138 4.138 26 C -0.161 4.161 27 C -0.158 4.158 28 C -0.157 4.157 29 H 0.053 0.947 30 H 0.121 0.879 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.041 0.959 34 H 0.098 0.902 35 H 0.124 0.876 36 H 0.112 0.888 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.092 0.908 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.015 0.985 43 H 0.036 0.964 44 H 0.044 0.956 45 H 0.054 0.946 46 H 0.091 0.909 47 H 0.080 0.920 48 H 0.077 0.923 49 H 0.117 0.883 50 H 0.102 0.898 51 H 0.062 0.938 52 H 0.107 0.893 53 H 0.078 0.922 54 H 0.119 0.881 55 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.624 3.237 21.598 21.996 hybrid contribution -0.066 -0.403 -1.051 1.128 sum 2.558 2.834 20.547 20.898 Atomic orbital electron populations 1.22914 0.79787 1.03964 1.00404 1.87810 1.21222 1.28137 1.95494 1.22543 0.94874 0.84393 0.99568 1.21699 0.92340 0.95019 1.05211 1.21568 0.97946 0.93614 0.94321 1.20599 0.78688 0.85690 0.82215 1.90641 1.43902 1.29299 1.82145 1.48588 1.50220 1.30756 1.04982 1.22580 0.96017 0.89479 0.94600 1.22361 0.97742 1.01006 0.92839 1.22847 0.97765 0.96733 0.95326 0.93004 1.20861 0.99894 0.90392 0.85259 1.44115 1.02966 1.48442 1.38489 1.20575 0.84832 0.93928 0.97049 1.19455 0.88341 0.97475 1.32149 0.90891 1.25775 0.99034 0.97274 1.02056 1.70276 1.24817 1.14825 1.48856 0.85340 0.80733 0.78537 0.76768 1.18744 1.21953 1.22616 1.22183 0.98683 0.94935 0.84780 1.22486 0.99188 0.98697 0.93455 1.22334 0.94725 0.97725 1.01364 1.22142 0.97532 0.97678 0.98481 1.22464 0.90334 1.02012 1.00858 0.94700 0.87937 0.92748 0.92406 0.95947 0.90193 0.87616 0.88822 0.90543 0.92094 0.90790 0.92662 0.92998 0.98474 0.96434 0.95569 0.94610 0.90869 0.91978 0.92290 0.88327 0.89803 0.93766 0.89340 0.92228 0.88096 0.91138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 113.37 1.25 1.75 16 2 O -0.41 -10.30 10.70 -148.98 -1.59 -11.89 16 3 C 0.06 1.51 5.43 71.98 0.39 1.90 16 4 C -0.11 -2.12 4.35 30.59 0.13 -1.99 16 5 C -0.07 -1.47 0.28 -51.85 -0.01 -1.49 16 6 C 0.54 15.23 5.01 87.66 0.44 15.67 16 7 O -0.58 -20.27 15.50 -3.04 -0.05 -20.31 16 8 N -0.61 -17.33 3.29 -811.71 -2.67 -20.00 16 9 C 0.09 2.44 5.54 86.74 0.48 2.92 16 10 C -0.10 -3.31 5.57 31.80 0.18 -3.14 16 11 C -0.10 -3.61 3.27 -9.40 -0.03 -3.64 16 12 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 13 C 0.16 6.16 5.23 86.38 0.45 6.61 16 14 N -0.62 -29.51 2.90 -726.92 -2.11 -31.62 16 15 C 0.18 8.95 8.99 127.77 1.15 10.10 16 16 C -0.24 -12.55 8.85 84.03 0.74 -11.81 16 17 H 0.07 3.63 7.83 -2.91 -0.02 3.60 16 18 C -0.05 -2.52 5.38 84.86 0.46 -2.06 16 19 N -0.94 -54.11 10.11 21.65 0.22 -53.89 16 20 Si 0.96 43.33 29.56 68.60 2.03 45.36 16 21 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 22 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 23 H -0.30 -13.80 7.11 99.48 0.71 -13.10 16 24 C 0.12 3.57 6.36 86.85 0.55 4.12 16 25 C -0.10 -1.89 4.76 31.88 0.15 -1.74 16 26 C -0.12 -2.21 6.53 31.67 0.21 -2.01 16 27 C -0.12 -1.82 6.80 31.32 0.21 -1.61 16 28 C -0.12 -1.95 5.39 31.32 0.17 -1.78 16 29 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.06 1.29 7.26 -2.39 -0.02 1.28 16 33 H 0.02 0.65 7.32 -2.39 -0.02 0.63 16 34 H 0.08 1.71 4.99 -2.39 -0.01 1.70 16 35 H 0.11 1.69 8.06 -2.39 -0.02 1.67 16 36 H 0.09 1.98 5.70 -2.39 -0.01 1.97 16 37 H 0.08 1.91 5.36 -2.38 -0.01 1.90 16 38 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.07 2.40 7.96 -2.39 -0.02 2.38 16 40 H 0.06 2.00 7.94 -2.39 -0.02 1.98 16 41 H 0.05 1.82 7.86 -2.39 -0.02 1.80 16 42 H 0.00 -0.17 7.47 -2.39 -0.02 -0.19 16 43 H 0.02 0.75 7.83 -2.39 -0.02 0.73 16 44 H 0.03 1.41 6.99 -2.38 -0.02 1.39 16 45 H 0.24 13.81 8.31 -92.70 -0.77 13.04 16 46 H 0.07 2.11 8.04 -2.39 -0.02 2.09 16 47 H 0.06 1.98 8.09 -2.39 -0.02 1.96 16 48 H 0.06 1.36 7.15 -2.38 -0.02 1.34 16 49 H 0.10 1.38 8.00 -2.39 -0.02 1.36 16 50 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 51 H 0.04 1.03 7.76 -2.38 -0.02 1.01 16 52 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 53 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 54 H 0.10 1.23 7.84 -2.39 -0.02 1.21 16 55 H 0.07 1.27 4.89 -2.39 -0.01 1.26 16 Total: -1.00 -65.53 409.91 3.59 -61.94 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: 0.85 Total: 18.60 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: 6.92 Total: 11.82 kcal Atomic # 7 Polarization: -100.95 SS G_CDS: -4.56 Total: -105.51 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -1.64 Total: -32.21 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -65.53 3.59 -61.94 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691999909.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.552 kcal (2) G-P(sol) polarization free energy of solvation -65.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds