Wall clock time and date at job start Tue Mar 31 2020 22:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36939 * 119.99398 * 2 1 4 4 H 1.07999 * 119.99606 * 201.06890 * 3 2 1 5 5 C 1.38813 * 120.00164 * 21.06771 * 3 2 1 6 6 N 1.31618 * 120.00296 * 13.21759 * 5 3 2 7 7 Si 1.86807 * 119.99790 * 193.21327 * 5 3 2 8 8 H 1.48495 * 109.46959 * 90.00202 * 7 5 3 9 9 H 1.48498 * 109.46991 * 210.00404 * 7 5 3 10 10 H 1.48502 * 109.47175 * 330.00240 * 7 5 3 11 11 C 1.46492 * 120.00254 * 179.97438 * 2 1 3 12 12 C 1.53009 * 109.46958 * 90.00047 * 11 2 1 13 13 C 1.53036 * 109.45776 * 174.99913 * 12 11 2 14 14 C 1.53193 * 109.31362 * 181.37164 * 13 12 11 15 15 N 1.46935 * 108.77344 * 305.36716 * 14 13 12 16 16 C 1.34772 * 120.62745 * 233.58235 * 15 14 13 17 17 O 1.21286 * 120.00284 * 359.97438 * 16 15 14 18 18 C 1.50697 * 119.99945 * 179.97438 * 16 15 14 19 19 O 1.42894 * 109.47183 * 180.02562 * 18 16 15 20 20 C 1.42906 * 114.00052 * 180.02562 * 19 18 16 21 21 C 1.53001 * 109.46933 * 269.99670 * 20 19 18 22 22 C 1.52992 * 109.47102 * 179.97438 * 21 20 19 23 23 C 1.53001 * 109.47163 * 60.00271 * 22 21 20 24 24 C 1.53001 * 109.46890 * 299.99858 * 23 22 21 25 25 C 1.52992 * 109.47102 * 60.00104 * 24 23 22 26 26 C 1.46922 * 118.73847 * 53.85839 * 15 14 13 27 27 C 1.53036 * 109.44750 * 295.06228 * 12 11 2 28 28 H 1.09001 * 109.47011 * 275.21841 * 1 2 3 29 29 H 1.09000 * 109.47390 * 35.22218 * 1 2 3 30 30 H 1.09002 * 109.46837 * 155.22116 * 1 2 3 31 31 H 0.96997 * 120.00181 * 179.97438 * 6 5 3 32 32 H 1.09003 * 109.47206 * 330.00160 * 11 2 1 33 33 H 1.08999 * 109.47244 * 209.99658 * 11 2 1 34 34 H 1.09000 * 109.45811 * 55.02527 * 12 11 2 35 35 H 1.09001 * 109.49921 * 61.41834 * 13 12 11 36 36 H 1.09003 * 109.52978 * 301.33986 * 13 12 11 37 37 H 1.09003 * 109.59095 * 185.57744 * 14 13 12 38 38 H 1.09002 * 109.69879 * 65.21963 * 14 13 12 39 39 H 1.08999 * 109.47113 * 299.99887 * 18 16 15 40 40 H 1.08996 * 109.47228 * 59.99748 * 18 16 15 41 41 H 1.08998 * 109.47100 * 29.99665 * 20 19 18 42 42 H 1.08998 * 109.47223 * 299.99919 * 21 20 19 43 43 H 1.09010 * 109.46938 * 59.99854 * 21 20 19 44 44 H 1.09006 * 109.47441 * 300.00425 * 22 21 20 45 45 H 1.09002 * 109.47456 * 180.02562 * 22 21 20 46 46 H 1.08998 * 109.47199 * 179.97438 * 23 22 21 47 47 H 1.08998 * 109.47094 * 59.99823 * 23 22 21 48 48 H 1.08998 * 109.47223 * 299.99885 * 24 23 22 49 49 H 1.09010 * 109.46938 * 179.97438 * 24 23 22 50 50 H 1.09006 * 109.47757 * 179.97438 * 25 24 23 51 51 H 1.08998 * 109.47260 * 59.99804 * 25 24 23 52 52 H 1.09002 * 109.59116 * 65.92485 * 26 15 14 53 53 H 1.08997 * 109.58660 * 186.35064 * 26 15 14 54 54 H 1.09010 * 109.49638 * 298.56969 * 27 12 11 55 55 H 1.08992 * 109.49825 * 58.66758 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1755 1.2173 -0.3362 5 6 1.5251 2.3479 0.4321 6 7 0.3813 2.2786 1.0797 7 14 2.3081 4.0101 0.0947 8 1 1.8233 4.5300 -1.2090 9 1 1.9384 4.9598 1.1748 10 1 3.7850 3.8617 0.0501 11 6 2.1976 -1.2686 0.0006 12 6 2.4526 -1.7109 -1.4418 13 6 3.3242 -2.9688 -1.4428 14 6 3.6059 -3.3890 -2.8888 15 7 2.3263 -3.5408 -3.5949 16 6 2.0321 -4.6843 -4.2446 17 8 2.8271 -5.6003 -4.2506 18 6 0.7152 -4.8250 -4.9637 19 8 0.6388 -6.1170 -5.5694 20 6 -0.5773 -6.3542 -6.2813 21 6 -1.6115 -6.9664 -5.3344 22 6 -2.9137 -7.2198 -6.0964 23 6 -2.6479 -8.1846 -7.2538 24 6 -1.6137 -7.5724 -8.2007 25 6 -0.3115 -7.3190 -7.4387 26 6 1.3763 -2.4201 -3.5843 27 6 1.1173 -2.0128 -2.1258 28 1 -0.3633 0.0935 1.0234 29 1 -0.3634 0.8395 -0.5927 30 1 -0.3633 -0.9331 -0.4307 31 1 -0.0549 3.0905 1.3819 32 1 1.6085 -2.0281 0.5147 33 1 3.1500 -1.1380 0.5143 34 1 2.9647 -0.9139 -1.9809 35 1 2.8021 -3.7736 -0.9252 36 1 4.2657 -2.7602 -0.9346 37 1 4.1420 -4.3380 -2.8958 38 1 4.2074 -2.6258 -3.3826 39 1 -0.1018 -4.7090 -4.2517 40 1 0.6378 -4.0573 -5.7336 41 1 -0.9579 -5.4116 -6.6746 42 1 -1.2309 -7.9090 -4.9411 43 1 -1.8012 -6.2789 -4.5100 44 1 -3.2941 -6.2769 -6.4895 45 1 -3.6507 -7.6555 -5.4218 46 1 -3.5757 -8.3655 -7.7964 47 1 -2.2675 -9.1274 -6.8608 48 1 -1.9941 -6.6296 -8.5937 49 1 -1.4240 -8.2599 -9.0251 50 1 0.4255 -6.8832 -8.1133 51 1 0.0689 -8.2618 -7.0457 52 1 1.7987 -1.5777 -4.1322 53 1 0.4408 -2.7296 -4.0504 54 1 0.6160 -2.8267 -1.6019 55 1 0.4880 -1.1232 -2.1040 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692016511.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:05 Heat of formation + Delta-G solvation = -97.567814 kcal Electronic energy + Delta-G solvation = -30383.726979 eV Core-core repulsion = 26419.678435 eV Total energy + Delta-G solvation = -3964.048543 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.34763 -40.06553 -38.97757 -37.32315 -37.00895 -34.57622 -32.82850 -31.95593 -31.71265 -30.95499 -29.24824 -28.05485 -27.61818 -24.97142 -24.10829 -23.51932 -23.11273 -22.52735 -21.44346 -20.81482 -19.96413 -18.66365 -18.42465 -17.56489 -17.08434 -17.00438 -16.83666 -16.08606 -15.70812 -15.59547 -15.50852 -15.33460 -15.10956 -14.93520 -14.76478 -14.57461 -14.26140 -14.07854 -13.78395 -13.61609 -13.50932 -13.36481 -13.14806 -13.03607 -12.83946 -12.77463 -12.47895 -12.37762 -12.16012 -12.06395 -11.98047 -11.93743 -11.86925 -11.83183 -11.50236 -11.46915 -11.30549 -11.25501 -11.19650 -10.74892 -10.57254 -10.42584 -9.70215 -8.70401 -7.77458 -5.24201 1.48256 1.49038 1.51202 1.57446 1.70853 2.53935 2.77970 3.34533 3.48318 3.69528 3.78024 3.81058 3.84490 4.01485 4.06676 4.11057 4.14923 4.17114 4.20404 4.28150 4.32773 4.36024 4.39139 4.47887 4.56372 4.58460 4.61042 4.68062 4.77323 4.80850 4.86274 4.91476 4.94970 5.01631 5.03858 5.10664 5.12713 5.15053 5.19306 5.23163 5.24028 5.30858 5.32293 5.39301 5.42250 5.51382 5.61050 5.63820 5.68492 5.79505 6.14320 6.36955 6.38643 7.10187 7.20928 7.94729 8.37021 9.24970 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.017547 B = 0.002123 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.288850 B =13183.979668 C =13995.401618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.616 5.616 3 C -0.251 4.251 4 H 0.070 0.930 5 C -0.058 4.058 6 N -0.942 5.942 7 Si 0.964 3.036 8 H -0.286 1.286 9 H -0.299 1.299 10 H -0.270 1.270 11 C 0.155 3.845 12 C -0.096 4.096 13 C -0.116 4.116 14 C 0.116 3.884 15 N -0.604 5.604 16 C 0.511 3.489 17 O -0.576 6.576 18 C 0.047 3.953 19 O -0.389 6.389 20 C 0.085 3.915 21 C -0.142 4.142 22 C -0.114 4.114 23 C -0.123 4.123 24 C -0.112 4.112 25 C -0.116 4.116 26 C 0.109 3.891 27 C -0.119 4.119 28 H -0.006 1.006 29 H 0.016 0.984 30 H 0.039 0.961 31 H 0.246 0.754 32 H 0.040 0.960 33 H 0.038 0.962 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.099 0.901 40 H 0.106 0.894 41 H 0.079 0.921 42 H 0.056 0.944 43 H 0.064 0.936 44 H 0.072 0.928 45 H 0.070 0.930 46 H 0.076 0.924 47 H 0.057 0.943 48 H 0.073 0.927 49 H 0.075 0.925 50 H 0.065 0.935 51 H 0.057 0.943 52 H 0.079 0.921 53 H 0.108 0.892 54 H 0.061 0.939 55 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.652 -17.770 -18.231 26.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.339 5.339 3 C -0.381 4.381 4 H 0.088 0.912 5 C -0.253 4.253 6 N -0.590 5.590 7 Si 0.794 3.206 8 H -0.213 1.213 9 H -0.226 1.226 10 H -0.195 1.195 11 C 0.029 3.971 12 C -0.117 4.117 13 C -0.155 4.155 14 C -0.006 4.006 15 N -0.338 5.338 16 C 0.300 3.700 17 O -0.456 6.456 18 C -0.032 4.032 19 O -0.308 6.308 20 C 0.027 3.973 21 C -0.180 4.180 22 C -0.152 4.152 23 C -0.161 4.161 24 C -0.149 4.149 25 C -0.154 4.154 26 C -0.012 4.012 27 C -0.158 4.158 28 H 0.012 0.988 29 H 0.035 0.965 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.117 0.883 40 H 0.123 0.877 41 H 0.097 0.903 42 H 0.074 0.926 43 H 0.083 0.917 44 H 0.091 0.909 45 H 0.089 0.911 46 H 0.095 0.905 47 H 0.076 0.924 48 H 0.092 0.908 49 H 0.094 0.906 50 H 0.084 0.916 51 H 0.075 0.925 52 H 0.098 0.902 53 H 0.126 0.874 54 H 0.080 0.920 55 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.185 -18.272 -18.148 26.270 hybrid contribution 0.263 1.381 0.545 1.508 sum -4.921 -16.891 -17.603 24.888 Atomic orbital electron populations 1.20596 0.82767 0.96124 0.97163 1.44120 1.02072 1.01512 1.86208 1.19497 0.97239 0.86384 1.34995 0.91206 1.25713 0.98626 1.01573 0.99338 1.70249 1.19733 1.26992 1.41976 0.85297 0.78345 0.80225 0.76780 1.21291 1.22642 1.19494 1.20906 0.95148 0.86587 0.94492 1.21599 0.95939 0.96198 0.97963 1.21823 1.00704 0.97250 0.95701 1.21584 0.84812 1.02065 0.92180 1.48189 1.19465 1.14589 1.51568 1.20812 0.88842 0.81506 0.78878 1.90675 1.51794 1.40558 1.62543 1.22375 0.94732 0.87568 0.98532 1.88013 1.39878 1.32365 1.70538 1.22386 0.83684 0.99176 0.92006 1.22044 0.95946 1.01344 0.98635 1.21496 0.95934 1.00401 0.97364 1.21596 0.99443 0.98521 0.96519 1.21497 0.93668 1.01892 0.97849 1.21597 0.98865 0.99027 0.95914 1.22061 0.93127 0.88558 0.97497 1.21971 0.97625 1.01274 0.94881 0.98820 0.96510 0.94290 0.94510 0.94136 0.94375 0.92368 0.92136 0.90049 0.90322 0.90555 0.88309 0.87651 0.90297 0.92556 0.91684 0.90898 0.91148 0.90528 0.92429 0.90842 0.90608 0.91621 0.92455 0.90228 0.87429 0.92049 0.90870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.38 7.86 127.77 1.00 9.38 16 2 N -0.62 -29.26 2.75 -726.91 -2.00 -31.26 16 3 C -0.25 -13.28 9.67 84.03 0.81 -12.47 16 4 H 0.07 3.60 7.86 -2.91 -0.02 3.58 16 5 C -0.06 -3.20 5.10 84.86 0.43 -2.76 16 6 N -0.94 -55.12 10.61 21.65 0.23 -54.89 16 7 Si 0.96 44.41 29.57 68.60 2.03 46.44 16 8 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 9 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 10 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 11 C 0.15 5.86 5.14 86.38 0.44 6.30 16 12 C -0.10 -2.88 2.36 -10.77 -0.03 -2.91 16 13 C -0.12 -2.95 5.36 30.67 0.16 -2.78 16 14 C 0.12 2.86 6.43 86.36 0.56 3.42 16 15 N -0.60 -14.44 2.97 -818.04 -2.43 -16.87 16 16 C 0.51 13.72 7.77 87.66 0.68 14.40 16 17 O -0.58 -20.76 15.91 15.99 0.25 -20.50 16 18 C 0.05 0.91 4.57 71.24 0.33 1.24 16 19 O -0.39 -9.20 9.52 -129.94 -1.24 -10.44 16 20 C 0.08 1.38 2.61 30.59 0.08 1.46 16 21 C -0.14 -2.12 5.54 30.59 0.17 -1.95 16 22 C -0.11 -1.23 5.92 30.59 0.18 -1.05 16 23 C -0.12 -1.23 5.92 30.59 0.18 -1.05 16 24 C -0.11 -1.14 5.92 30.59 0.18 -0.96 16 25 C -0.12 -1.76 5.57 30.59 0.17 -1.59 16 26 C 0.11 2.21 6.37 86.51 0.55 2.76 16 27 C -0.12 -3.13 4.42 30.82 0.14 -3.00 16 28 H -0.01 -0.35 7.38 -2.39 -0.02 -0.37 16 29 H 0.02 0.84 7.22 -2.39 -0.02 0.82 16 30 H 0.04 1.50 6.20 -2.39 -0.01 1.48 16 31 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 32 H 0.04 1.47 8.07 -2.39 -0.02 1.45 16 33 H 0.04 1.49 8.04 -2.39 -0.02 1.47 16 34 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.08 2.13 7.01 -2.39 -0.02 2.11 16 38 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.10 1.51 7.43 -2.39 -0.02 1.49 16 40 H 0.11 1.44 7.87 -2.39 -0.02 1.42 16 41 H 0.08 0.99 7.79 -2.39 -0.02 0.97 16 42 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.06 0.95 7.87 -2.38 -0.02 0.93 16 44 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 45 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 46 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 47 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 48 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 49 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 50 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 51 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 52 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 53 H 0.11 1.53 5.93 -2.39 -0.01 1.51 16 54 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 55 H 0.07 2.22 5.87 -2.39 -0.01 2.20 16 Total: -1.00 -70.15 414.19 3.73 -66.42 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: 0.83 Total: 12.67 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: 6.05 Total: 8.43 kcal Atomic # 7 Polarization: -98.83 SS G_CDS: -4.19 Total: -103.02 kcal Atomic # 8 Polarization: -29.95 SS G_CDS: -0.98 Total: -30.94 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -70.15 3.73 -66.42 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692016511.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.148 kcal (2) G-P(sol) polarization free energy of solvation -70.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds