Wall clock time and date at job start Tue Mar 31 2020 22:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 114.00298 * 2 1 4 4 C 1.53005 * 109.47398 * 174.97819 * 3 2 1 5 5 C 1.50699 * 110.43309 * 63.86072 * 4 3 2 6 6 O 1.21277 * 120.00061 * 112.45041 * 5 4 3 7 7 N 1.34774 * 120.00037 * 292.45160 * 5 4 3 8 8 C 1.46956 * 120.35369 * 184.34371 * 7 5 4 9 9 C 1.52337 * 109.09216 * 68.37829 * 8 7 5 10 10 C 1.53803 * 109.16193 * 72.69893 * 9 8 7 11 11 C 1.52438 * 109.42383 * 282.13285 * 10 9 8 12 12 C 1.53970 * 110.73584 * 113.72780 * 11 10 9 13 13 C 1.52875 * 109.71403 * 315.65160 * 12 11 10 14 14 H 1.08999 * 109.48506 * 47.08258 * 13 12 11 15 15 N 1.46507 * 109.47957 * 167.11123 * 13 12 11 16 16 C 1.36933 * 119.99726 * 274.99251 * 15 13 12 17 17 H 1.07999 * 120.00491 * 0.02562 * 16 15 13 18 18 C 1.38813 * 119.99967 * 180.02562 * 16 15 13 19 19 N 1.31618 * 120.00083 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99967 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47554 * 60.00041 * 20 18 16 22 22 H 1.48500 * 109.46764 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.46749 * 299.99599 * 20 18 16 24 24 C 1.45342 * 120.35662 * 4.06540 * 7 5 4 25 25 C 1.55235 * 110.57892 * 301.27915 * 4 3 2 26 26 C 1.54888 * 102.58653 * 203.34002 * 25 4 3 27 27 C 1.54261 * 104.31666 * 37.92650 * 26 25 4 28 28 C 1.53875 * 106.59784 * 336.32906 * 27 26 25 29 29 H 1.08998 * 109.46946 * 304.98826 * 1 2 3 30 30 H 1.09006 * 109.47376 * 64.98427 * 1 2 3 31 31 H 1.09000 * 109.47379 * 184.98685 * 1 2 3 32 32 H 1.08998 * 109.47082 * 54.97984 * 3 2 1 33 33 H 1.09001 * 109.47713 * 294.98303 * 3 2 1 34 34 H 1.09000 * 109.53458 * 188.26070 * 8 7 5 35 35 H 1.09001 * 109.53597 * 308.41249 * 8 7 5 36 36 H 1.08992 * 109.52560 * 192.60677 * 9 8 7 37 37 H 1.09001 * 109.51774 * 312.80072 * 9 8 7 38 38 H 1.09002 * 109.47756 * 42.12315 * 10 9 8 39 39 H 1.09004 * 109.47583 * 162.14944 * 10 9 8 40 40 H 1.08998 * 109.22891 * 234.05177 * 11 10 9 41 41 H 1.09008 * 109.22695 * 353.44844 * 11 10 9 42 42 H 1.09005 * 109.42577 * 75.72326 * 12 11 10 43 43 H 1.09001 * 109.43440 * 195.57067 * 12 11 10 44 44 H 0.97000 * 119.99936 * 94.99638 * 15 13 12 45 45 H 0.96995 * 120.00142 * 180.02562 * 19 18 16 46 46 H 1.09006 * 109.67050 * 343.08009 * 24 7 5 47 47 H 1.09002 * 109.67756 * 103.61129 * 24 7 5 48 48 H 1.08994 * 110.90175 * 85.04645 * 25 4 3 49 49 H 1.09007 * 110.76521 * 321.56685 * 25 4 3 50 50 H 1.09006 * 110.48275 * 279.18222 * 26 25 4 51 51 H 1.09003 * 110.48934 * 156.68205 * 26 25 4 52 52 H 1.09002 * 110.02900 * 95.60718 * 27 26 25 53 53 H 1.08995 * 110.03879 * 216.99168 * 27 26 25 54 54 H 1.09003 * 110.03274 * 119.27878 * 28 27 26 55 55 H 1.08999 * 110.03255 * 240.65876 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5305 1.1868 0.1263 5 6 4.1047 0.4811 -1.0750 6 8 4.8081 1.0869 -1.8554 7 7 3.8366 -0.8234 -1.2822 8 6 4.4680 -1.5435 -2.3968 9 6 5.9596 -1.6813 -2.1197 10 6 6.1723 -2.7213 -1.0067 11 6 5.8581 -2.0893 0.3445 12 6 4.6157 -2.7433 0.9765 13 6 3.5240 -2.9057 -0.0813 14 1 3.9549 -3.3359 -0.9854 15 7 2.4760 -3.7925 0.4303 16 6 2.6097 -5.1501 0.3115 17 1 3.4878 -5.5672 -0.1590 18 6 1.6165 -5.9903 0.7958 19 7 0.5461 -5.4821 1.3687 20 14 1.7992 -7.8423 0.6343 21 1 3.0229 -8.2835 1.3505 22 1 0.6121 -8.5102 1.2260 23 1 1.9078 -8.2056 -0.8015 24 6 2.9244 -1.5346 -0.4020 25 6 3.9128 0.4370 1.4306 26 6 5.3568 0.9318 1.6935 27 6 5.3304 2.4194 1.2859 28 6 4.1691 2.5815 0.2894 29 1 -0.3633 0.5893 0.8419 30 1 -0.3634 0.4346 -0.9313 31 1 -0.3634 -1.0238 0.0893 32 1 1.6193 1.8772 0.8416 33 1 1.7616 1.8140 -0.9315 34 1 4.0218 -2.5335 -2.4906 35 1 4.3179 -0.9869 -3.3219 36 1 6.4698 -2.0079 -3.0257 37 1 6.3612 -0.7194 -1.8009 38 1 5.5111 -3.5718 -1.1728 39 1 7.2087 -3.0589 -1.0179 40 1 6.7112 -2.2220 1.0099 41 1 5.6719 -1.0240 0.2078 42 1 4.8839 -3.7222 1.3740 43 1 4.2461 -2.1131 1.7854 44 1 1.6875 -3.4179 0.8532 45 1 -0.1477 -6.0692 1.7075 46 1 2.7886 -0.9692 0.5200 47 1 1.9627 -1.6651 -0.8981 48 1 3.8961 -0.6421 1.2779 49 1 3.2516 0.7228 2.2487 50 1 6.0671 0.3801 1.0777 51 1 5.6088 0.8298 2.7491 52 1 5.1597 3.0438 2.1629 53 1 6.2722 2.6931 0.8105 54 1 3.4349 3.2846 0.6829 55 1 4.5470 2.9346 -0.6701 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692120328.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:30 Heat of formation + Delta-G solvation = -49.015488 kcal Electronic energy + Delta-G solvation = -34275.138905 eV Core-core repulsion = 30313.195748 eV Total energy + Delta-G solvation = -3961.943157 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.43800 -39.41701 -38.80478 -37.73875 -36.15891 -35.12607 -33.91172 -32.01469 -31.49211 -29.60021 -28.65389 -27.50554 -27.38912 -25.58270 -25.32377 -24.11579 -22.87680 -22.48762 -21.28140 -20.39040 -19.51042 -18.90031 -18.27945 -17.42547 -17.13682 -16.87434 -16.69714 -16.56279 -16.31978 -16.01062 -15.56605 -15.13125 -14.94915 -14.93700 -14.70661 -14.36936 -14.14256 -14.05183 -13.78586 -13.59080 -13.22282 -13.02300 -12.88627 -12.81671 -12.65336 -12.47451 -12.33791 -12.18489 -12.15782 -12.09430 -11.93984 -11.84553 -11.82274 -11.62484 -11.54117 -11.45477 -11.31775 -11.12700 -10.93699 -10.73458 -10.57998 -10.20677 -9.35086 -8.87627 -7.86849 -5.13167 1.50479 1.51607 1.57313 1.67856 2.12887 2.61929 2.81052 3.45497 3.46768 3.58150 3.64868 3.83617 3.92003 4.03682 4.06975 4.18460 4.26052 4.31334 4.31938 4.37442 4.42837 4.51328 4.55011 4.57280 4.59507 4.64306 4.64957 4.72296 4.76973 4.79994 4.83684 4.89547 4.91079 5.00446 5.01997 5.03864 5.09470 5.11495 5.15755 5.21617 5.26242 5.29825 5.35646 5.43526 5.47919 5.52627 5.55810 5.63571 5.67877 5.79973 6.21197 6.35303 6.59921 7.27152 7.42428 8.18713 8.43089 9.36061 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013389 B = 0.004544 C = 0.004009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.740486 B = 6160.817659 C = 6982.115016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.381 6.381 3 C 0.061 3.939 4 C -0.082 4.082 5 C 0.530 3.470 6 O -0.577 6.577 7 N -0.585 5.585 8 C 0.108 3.892 9 C -0.124 4.124 10 C -0.124 4.124 11 C -0.121 4.121 12 C -0.128 4.128 13 C 0.148 3.852 14 H 0.059 0.941 15 N -0.728 5.728 16 C -0.230 4.230 17 H 0.070 0.930 18 C -0.069 4.069 19 N -0.964 5.964 20 Si 0.961 3.039 21 H -0.282 1.282 22 H -0.298 1.298 23 H -0.281 1.281 24 C 0.106 3.894 25 C -0.144 4.144 26 C -0.130 4.130 27 C -0.116 4.116 28 C -0.103 4.103 29 H 0.059 0.941 30 H 0.045 0.955 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.051 0.949 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.083 0.917 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.069 0.931 40 H 0.057 0.943 41 H 0.073 0.927 42 H 0.038 0.962 43 H 0.059 0.941 44 H 0.374 0.626 45 H 0.249 0.751 46 H 0.139 0.861 47 H 0.058 0.942 48 H 0.096 0.904 49 H 0.091 0.909 50 H 0.055 0.945 51 H 0.081 0.919 52 H 0.085 0.915 53 H 0.059 0.941 54 H 0.093 0.907 55 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.747 16.958 -1.058 18.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.301 6.301 3 C -0.015 4.015 4 C -0.085 4.085 5 C 0.319 3.681 6 O -0.458 6.458 7 N -0.315 5.315 8 C -0.014 4.014 9 C -0.162 4.162 10 C -0.161 4.161 11 C -0.159 4.159 12 C -0.168 4.168 13 C 0.039 3.961 14 H 0.076 0.924 15 N -0.368 5.368 16 C -0.362 4.362 17 H 0.088 0.912 18 C -0.262 4.262 19 N -0.615 5.615 20 Si 0.791 3.209 21 H -0.209 1.209 22 H -0.224 1.224 23 H -0.208 1.208 24 C -0.016 4.016 25 C -0.180 4.180 26 C -0.168 4.168 27 C -0.153 4.153 28 C -0.141 4.141 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.094 0.906 32 H 0.104 0.896 33 H 0.069 0.931 34 H 0.100 0.900 35 H 0.083 0.917 36 H 0.102 0.898 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.092 0.908 42 H 0.057 0.943 43 H 0.077 0.923 44 H 0.206 0.794 45 H 0.058 0.942 46 H 0.155 0.845 47 H 0.077 0.923 48 H 0.114 0.886 49 H 0.109 0.891 50 H 0.074 0.926 51 H 0.100 0.900 52 H 0.103 0.897 53 H 0.078 0.922 54 H 0.111 0.889 55 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.271 16.921 -1.538 18.482 hybrid contribution -0.771 -1.164 -0.004 1.396 sum 6.500 15.757 -1.542 17.115 Atomic orbital electron populations 1.22851 0.81572 1.02955 1.00726 1.88777 1.20092 1.25975 1.95257 1.22618 0.90706 0.86348 1.01834 1.21768 0.94857 0.97906 0.93966 1.20492 0.79693 0.81322 0.86552 1.90597 1.40666 1.66157 1.48360 1.47644 1.44715 1.09436 1.29690 1.21579 0.93684 0.97031 0.89115 1.21932 0.95471 0.99282 0.99556 1.21788 1.01506 0.98221 0.94616 1.21906 0.96971 1.00719 0.96318 1.22366 0.96094 0.99383 0.98942 1.21171 0.89000 0.90283 0.95619 0.92386 1.42407 1.21649 1.02024 1.70728 1.19458 1.02501 0.83956 1.30270 0.91193 1.25358 0.97099 1.01359 1.02347 1.69779 1.10390 1.34700 1.46669 0.85393 0.76368 0.81535 0.77555 1.20863 1.22412 1.20778 1.22475 0.90407 0.92195 0.96569 1.23409 0.97596 1.01853 0.95160 1.22511 0.96060 0.96236 1.01946 1.22081 0.97969 0.96323 0.98965 1.22077 0.98104 0.93170 1.00721 0.92236 0.93618 0.90616 0.89599 0.93121 0.89960 0.91686 0.89829 0.92076 0.92141 0.91272 0.92397 0.90825 0.94299 0.92275 0.79399 0.94241 0.84474 0.92346 0.88620 0.89050 0.92644 0.90046 0.89668 0.92203 0.88882 0.91384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.33 10.97 113.37 1.24 1.58 16 2 O -0.38 -9.95 4.46 -148.98 -0.66 -10.61 16 3 C 0.06 1.33 4.75 71.98 0.34 1.67 16 4 C -0.08 -1.94 0.54 -51.73 -0.03 -1.97 16 5 C 0.53 15.81 4.77 87.66 0.42 16.23 16 6 O -0.58 -19.91 14.35 -3.02 -0.04 -19.95 16 7 N -0.58 -17.71 1.68 -824.72 -1.39 -19.09 16 8 C 0.11 3.19 5.18 86.07 0.45 3.63 16 9 C -0.12 -3.33 5.56 30.65 0.17 -3.16 16 10 C -0.12 -3.44 5.49 30.68 0.17 -3.27 16 11 C -0.12 -3.48 5.13 30.74 0.16 -3.33 16 12 C -0.13 -4.42 4.86 30.88 0.15 -4.27 16 13 C 0.15 5.57 2.29 44.96 0.10 5.67 16 14 H 0.06 2.27 3.29 -2.39 -0.01 2.26 16 15 N -0.73 -34.80 5.12 -323.05 -1.66 -36.46 16 16 C -0.23 -12.27 9.90 84.03 0.83 -11.44 16 17 H 0.07 3.64 7.83 -2.91 -0.02 3.62 16 18 C -0.07 -3.84 5.50 84.86 0.47 -3.38 16 19 N -0.96 -56.94 13.06 21.65 0.28 -56.65 16 20 Si 0.96 45.35 29.55 68.60 2.03 47.38 16 21 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 22 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 23 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 24 C 0.11 3.47 2.80 86.61 0.24 3.71 16 25 C -0.14 -3.30 4.38 32.01 0.14 -3.16 16 26 C -0.13 -2.72 6.34 31.67 0.20 -2.52 16 27 C -0.12 -2.12 6.80 31.32 0.21 -1.91 16 28 C -0.10 -2.07 5.81 31.32 0.18 -1.89 16 29 H 0.06 1.10 8.12 -2.39 -0.02 1.08 16 30 H 0.05 0.93 8.14 -2.38 -0.02 0.92 16 31 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.09 1.42 8.02 -2.39 -0.02 1.40 16 33 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.08 2.52 6.07 -2.39 -0.01 2.51 16 35 H 0.06 1.90 8.05 -2.39 -0.02 1.88 16 36 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.06 1.80 6.34 -2.39 -0.02 1.79 16 38 H 0.06 1.90 5.47 -2.39 -0.01 1.89 16 39 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 40 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.07 2.07 1.67 -2.38 0.00 2.07 16 42 H 0.04 1.53 8.11 -2.38 -0.02 1.51 16 43 H 0.06 1.99 6.03 -2.39 -0.01 1.97 16 44 H 0.37 19.18 7.80 -92.71 -0.72 18.46 16 45 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 46 H 0.14 4.27 2.16 -14.96 -0.03 4.24 16 47 H 0.06 2.15 6.86 -2.39 -0.02 2.14 16 48 H 0.10 2.62 1.11 -2.39 0.00 2.61 16 49 H 0.09 1.85 8.07 -2.38 -0.02 1.83 16 50 H 0.05 1.33 5.80 -2.38 -0.01 1.32 16 51 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 52 H 0.08 1.19 8.14 -2.39 -0.02 1.18 16 53 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 54 H 0.09 1.40 7.78 -2.39 -0.02 1.38 16 55 H 0.07 1.64 6.79 -2.39 -0.02 1.62 16 Total: -1.00 -63.26 377.58 4.17 -59.09 By element: Atomic # 1 Polarization: 43.93 SS G_CDS: 0.16 Total: 44.09 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: 5.45 Total: -7.79 kcal Atomic # 7 Polarization: -109.45 SS G_CDS: -2.76 Total: -112.21 kcal Atomic # 8 Polarization: -29.85 SS G_CDS: -0.71 Total: -30.56 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -63.26 4.17 -59.09 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692120328.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.075 kcal (2) G-P(sol) polarization free energy of solvation -63.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds