Wall clock time and date at job start Tue Mar 31 2020 22:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46500 * 120.00274 * 2 1 4 4 C 1.52995 * 109.47363 * 89.99052 * 3 2 1 5 5 C 1.52999 * 109.47180 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.47604 * 180.02562 * 5 4 3 7 7 C 1.52990 * 109.47434 * 180.02562 * 6 5 4 8 8 C 1.53002 * 109.47268 * 179.97438 * 7 6 5 9 9 N 1.46504 * 109.47357 * 180.02562 * 8 7 6 10 10 C 1.36933 * 119.99756 * 180.02562 * 9 8 7 11 11 H 1.07995 * 120.00717 * 359.97438 * 10 9 8 12 12 C 1.38819 * 119.99602 * 180.02562 * 10 9 8 13 13 N 1.31622 * 120.00071 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99913 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.46873 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.46841 * 119.99711 * 14 12 10 17 17 H 1.48498 * 109.46969 * 239.99894 * 14 12 10 18 18 C 1.34780 * 119.99791 * 179.97438 * 2 1 3 19 19 O 1.21285 * 119.99937 * 185.44210 * 18 2 1 20 20 C 1.50695 * 120.00051 * 5.43397 * 18 2 1 21 21 C 1.54027 * 111.86230 * 292.50266 * 20 18 2 22 22 C 1.57188 * 103.35552 * 214.39790 * 21 20 18 23 23 C 1.54864 * 102.90556 * 37.60102 * 22 21 20 24 24 C 1.54344 * 104.13626 * 321.15306 * 23 22 21 25 25 H 1.08997 * 111.93517 * 147.01398 * 24 23 22 26 26 O 1.43814 * 108.58153 * 270.39237 * 24 23 22 27 27 C 1.44306 * 107.19045 * 140.23677 * 26 24 23 28 28 C 1.54620 * 111.90351 * 55.25265 * 20 18 2 29 29 H 1.09001 * 109.47233 * 95.32026 * 1 2 3 30 30 H 1.09007 * 109.47645 * 215.31619 * 1 2 3 31 31 H 1.09003 * 109.47530 * 335.32039 * 1 2 3 32 32 H 1.08995 * 109.47172 * 210.00120 * 3 2 1 33 33 H 1.09001 * 109.46617 * 329.99516 * 3 2 1 34 34 H 1.08996 * 109.47546 * 300.00200 * 4 3 2 35 35 H 1.09001 * 109.46875 * 60.00622 * 4 3 2 36 36 H 1.09005 * 109.47200 * 300.01061 * 5 4 3 37 37 H 1.08998 * 109.46933 * 60.00009 * 5 4 3 38 38 H 1.09007 * 109.46721 * 300.00458 * 6 5 4 39 39 H 1.08999 * 109.46816 * 59.99528 * 6 5 4 40 40 H 1.08997 * 109.47566 * 299.99884 * 7 6 5 41 41 H 1.09002 * 109.47319 * 60.00438 * 7 6 5 42 42 H 1.08996 * 109.47406 * 300.00225 * 8 7 6 43 43 H 1.09001 * 109.46757 * 60.00489 * 8 7 6 44 44 H 0.96996 * 119.99619 * 359.97438 * 9 8 7 45 45 H 0.96995 * 119.99872 * 180.02562 * 13 12 10 46 46 H 1.08995 * 110.43180 * 333.81794 * 21 20 18 47 47 H 1.09005 * 110.42927 * 96.31786 * 21 20 18 48 48 H 1.09001 * 110.78912 * 279.18059 * 22 21 20 49 49 H 1.08997 * 110.72244 * 155.99162 * 22 21 20 50 50 H 1.09004 * 110.49645 * 202.48888 * 23 22 21 51 51 H 1.09002 * 110.49755 * 79.81870 * 23 22 21 52 52 H 1.09003 * 110.61923 * 201.50483 * 27 26 24 53 53 H 1.09004 * 110.75656 * 78.57307 * 27 26 24 54 54 H 1.09003 * 110.90967 * 217.89092 * 28 20 18 55 55 H 1.09001 * 110.90913 * 341.49395 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7105 1.4424 5 6 3.2169 3.0358 1.4424 6 6 3.4723 3.4774 2.8848 7 6 4.2362 4.8029 2.8847 8 6 4.4911 5.2448 4.3272 9 7 5.2221 6.5145 4.3271 10 6 5.5644 7.1074 5.5130 11 1 5.2953 6.6394 6.4483 12 6 6.2566 8.3107 5.5129 13 7 6.5842 8.8814 4.3730 14 14 6.7231 9.1200 7.1306 15 1 6.2419 8.2836 8.2593 16 1 8.1998 9.2554 7.2086 17 1 6.0978 10.4646 7.2098 18 6 2.1388 -1.1673 0.0005 19 8 3.3476 -1.1696 0.1001 20 6 1.3904 -2.4694 -0.1225 21 6 0.5245 -2.7528 1.1194 22 6 0.5923 -4.3169 1.2601 23 6 2.0544 -4.6369 0.8625 24 6 2.3470 -3.6721 -0.3062 25 1 3.3893 -3.3536 -0.3201 26 8 1.9796 -4.3186 -1.5372 27 6 1.3592 -3.3204 -2.3745 28 6 0.4941 -2.5028 -1.3820 29 1 -0.3634 -0.0953 -1.0232 30 1 -0.3634 -0.8386 0.5941 31 1 -0.3634 0.9338 0.4291 32 1 3.1499 1.1383 -0.5138 33 1 1.6084 2.0283 -0.5139 34 1 1.5000 1.8409 1.9562 35 1 3.0414 0.9509 1.9564 36 1 4.1693 2.9059 0.9284 37 1 2.6275 3.7952 0.9285 38 1 2.5200 3.6072 3.3990 39 1 4.0618 2.7179 3.3983 40 1 5.1884 4.6736 2.3704 41 1 3.6462 5.5623 2.3714 42 1 3.5387 5.3744 4.8412 43 1 5.0809 4.4857 4.8408 44 1 5.4641 6.9346 3.4870 45 1 7.0681 9.7220 4.3729 46 1 0.9399 -2.2538 1.9949 47 1 -0.5028 -2.4309 0.9485 48 1 -0.1079 -4.7975 0.5769 49 1 0.3963 -4.6205 2.2884 50 1 2.1426 -5.6724 0.5337 51 1 2.7283 -4.4415 1.6966 52 1 0.7327 -3.7908 -3.1325 53 1 2.1122 -2.6851 -2.8409 54 1 -0.4475 -3.0118 -1.1760 55 1 0.3158 -1.4959 -1.7594 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692159059.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:08 Heat of formation + Delta-G solvation = -109.135335 kcal Electronic energy + Delta-G solvation = -29617.812903 eV Core-core repulsion = 25653.262754 eV Total energy + Delta-G solvation = -3964.550149 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.31794 -39.91390 -37.91369 -37.06143 -36.34507 -35.75399 -33.93781 -32.96665 -31.57278 -29.10743 -28.86153 -28.28123 -27.44581 -25.86589 -24.12328 -23.52440 -22.41337 -21.95246 -21.89742 -21.60534 -19.93639 -19.14039 -18.19349 -17.55933 -16.88763 -16.74185 -16.67153 -16.60371 -16.22036 -16.02818 -15.74573 -15.41070 -15.39502 -15.24029 -14.88343 -14.32478 -14.12544 -13.88222 -13.69063 -13.55369 -13.54135 -13.34958 -13.12830 -13.05317 -12.89142 -12.55924 -12.52004 -12.30526 -12.17427 -12.15457 -12.06581 -12.03834 -11.97381 -11.86035 -11.81788 -11.71142 -11.55782 -11.44953 -11.38461 -10.97059 -10.87677 -10.54161 -9.68929 -9.04161 -7.98508 -5.28367 1.45263 1.46982 1.47037 1.57372 1.91628 2.53822 2.74977 3.23972 3.34748 3.38779 3.52187 3.70952 3.75875 3.96317 4.01086 4.05199 4.07128 4.12586 4.17766 4.22482 4.28988 4.32363 4.35864 4.40696 4.50730 4.54923 4.61901 4.63227 4.70351 4.73268 4.76593 4.79517 4.84952 4.87243 4.89989 4.92927 4.96869 4.99255 5.02053 5.03354 5.11826 5.13030 5.15483 5.24421 5.32022 5.34612 5.44807 5.48890 5.50327 5.55513 5.88141 6.24274 6.31667 7.06374 7.29590 8.05787 8.29652 9.25478 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.026547 B = 0.001501 C = 0.001479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.498195 B =18647.935196 C =18924.392869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.608 5.608 3 C 0.114 3.886 4 C -0.121 4.121 5 C -0.110 4.110 6 C -0.104 4.104 7 C -0.114 4.114 8 C 0.148 3.852 9 N -0.750 5.750 10 C -0.251 4.251 11 H 0.075 0.925 12 C -0.078 4.078 13 N -0.970 5.970 14 Si 0.979 3.021 15 H -0.266 1.266 16 H -0.291 1.291 17 H -0.289 1.289 18 C 0.522 3.478 19 O -0.584 6.584 20 C -0.111 4.111 21 C -0.105 4.105 22 C -0.112 4.112 23 C -0.127 4.127 24 C 0.081 3.919 25 H 0.059 0.941 26 O -0.387 6.387 27 C 0.036 3.964 28 C -0.137 4.137 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.058 0.942 33 H 0.106 0.894 34 H 0.078 0.922 35 H 0.040 0.960 36 H 0.053 0.947 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.054 0.946 40 H 0.051 0.949 41 H 0.061 0.939 42 H 0.021 0.979 43 H 0.014 0.986 44 H 0.373 0.627 45 H 0.252 0.748 46 H 0.064 0.936 47 H 0.114 0.886 48 H 0.085 0.915 49 H 0.085 0.915 50 H 0.080 0.920 51 H 0.072 0.928 52 H 0.119 0.881 53 H 0.044 0.956 54 H 0.117 0.883 55 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.087 -29.664 -14.638 40.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.339 5.339 3 C -0.008 4.008 4 C -0.160 4.160 5 C -0.148 4.148 6 C -0.142 4.142 7 C -0.152 4.152 8 C 0.022 3.978 9 N -0.393 5.393 10 C -0.383 4.383 11 H 0.093 0.907 12 C -0.270 4.270 13 N -0.621 5.621 14 Si 0.807 3.193 15 H -0.190 1.190 16 H -0.219 1.219 17 H -0.216 1.216 18 C 0.311 3.689 19 O -0.464 6.464 20 C -0.115 4.115 21 C -0.143 4.143 22 C -0.149 4.149 23 C -0.164 4.164 24 C 0.023 3.977 25 H 0.077 0.923 26 O -0.307 6.307 27 C -0.040 4.040 28 C -0.174 4.174 29 H 0.098 0.902 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.076 0.924 33 H 0.124 0.876 34 H 0.097 0.903 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.080 0.920 42 H 0.039 0.961 43 H 0.032 0.968 44 H 0.205 0.795 45 H 0.061 0.939 46 H 0.083 0.917 47 H 0.132 0.868 48 H 0.103 0.897 49 H 0.104 0.896 50 H 0.098 0.902 51 H 0.091 0.909 52 H 0.137 0.863 53 H 0.062 0.938 54 H 0.136 0.864 55 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -22.457 -29.875 -14.456 40.073 hybrid contribution 1.316 1.207 0.477 1.848 sum -21.141 -28.668 -13.979 38.265 Atomic orbital electron populations 1.22541 0.76935 1.05488 1.03818 1.47903 1.08642 1.05046 1.72341 1.21566 0.97355 0.84812 0.97077 1.21804 1.00801 0.96454 0.96928 1.21447 1.00316 0.96771 0.96243 1.21412 1.00150 0.95178 0.97491 1.21615 1.00198 0.97901 0.95490 1.20864 0.93920 0.86624 0.96409 1.42656 1.67664 1.23634 1.05342 1.19730 1.28666 1.02636 0.87273 0.90681 1.25663 1.01954 0.98902 1.00525 1.69834 1.46308 1.19842 1.26137 0.84996 0.77180 0.78027 0.79078 1.19018 1.21854 1.21631 1.20690 0.87097 0.86096 0.75017 1.90696 1.16604 1.87691 1.51431 1.22551 0.96708 0.91547 1.00648 1.22926 0.99904 0.97264 0.94174 1.22865 0.95242 0.94073 1.02757 1.22527 0.98624 0.99455 0.95837 1.23335 0.97187 0.91362 0.85846 0.92281 1.88859 1.80028 1.34313 1.27509 1.23735 0.95341 0.90531 0.94396 1.23491 0.99038 1.03001 0.91917 0.90161 0.88988 0.89167 0.92373 0.87585 0.90334 0.94104 0.92861 0.90402 0.91047 0.92760 0.93037 0.91985 0.96067 0.96839 0.79501 0.93879 0.91746 0.86819 0.89660 0.89598 0.90168 0.90947 0.86327 0.93781 0.86440 0.88056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.26 8.96 127.77 1.14 1.41 16 2 N -0.61 -8.59 2.81 -846.76 -2.38 -10.98 16 3 C 0.11 1.85 5.34 86.38 0.46 2.32 16 4 C -0.12 -2.24 5.54 30.59 0.17 -2.07 16 5 C -0.11 -2.30 5.21 30.59 0.16 -2.15 16 6 C -0.10 -2.68 5.21 30.59 0.16 -2.52 16 7 C -0.11 -3.84 5.33 30.59 0.16 -3.67 16 8 C 0.15 6.32 6.26 86.38 0.54 6.86 16 9 N -0.75 -40.70 5.60 -343.45 -1.92 -42.63 16 10 C -0.25 -14.77 9.99 84.04 0.84 -13.93 16 11 H 0.08 4.24 7.83 -2.91 -0.02 4.21 16 12 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 13 N -0.97 -61.22 13.06 21.65 0.28 -60.94 16 14 Si 0.98 47.31 29.55 68.60 2.03 49.34 16 15 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 16 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 17 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 18 C 0.52 10.40 6.49 87.65 0.57 10.97 16 19 O -0.58 -17.73 15.15 -3.04 -0.05 -17.78 16 20 C -0.11 -1.51 0.49 -51.43 -0.03 -1.53 16 21 C -0.11 -0.89 4.55 32.42 0.15 -0.74 16 22 C -0.11 -0.95 6.94 32.70 0.23 -0.72 16 23 C -0.13 -1.83 6.50 31.69 0.21 -1.62 16 24 C 0.08 1.52 3.88 31.65 0.12 1.65 16 25 H 0.06 1.54 6.78 -2.39 -0.02 1.52 16 26 O -0.39 -7.29 11.08 -148.98 -1.65 -8.94 16 27 C 0.04 0.45 7.72 72.66 0.56 1.01 16 28 C -0.14 -1.05 5.26 31.83 0.17 -0.89 16 29 H 0.08 0.12 6.39 -2.39 -0.02 0.10 16 30 H 0.09 0.23 4.16 -2.38 -0.01 0.22 16 31 H 0.09 0.27 8.03 -2.39 -0.02 0.25 16 32 H 0.06 1.25 7.50 -2.39 -0.02 1.23 16 33 H 0.11 1.14 8.07 -2.39 -0.02 1.12 16 34 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 37 H 0.08 1.42 8.14 -2.39 -0.02 1.41 16 38 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 39 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 44 H 0.37 21.32 7.67 -92.71 -0.71 20.61 16 45 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 46 H 0.06 0.72 7.93 -2.39 -0.02 0.70 16 47 H 0.11 0.24 5.99 -2.38 -0.01 0.23 16 48 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 49 H 0.09 0.54 8.14 -2.39 -0.02 0.53 16 50 H 0.08 1.14 8.08 -2.39 -0.02 1.12 16 51 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 52 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 53 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 54 H 0.12 0.32 7.62 -2.39 -0.02 0.30 16 55 H 0.10 0.54 5.28 -2.39 -0.01 0.53 16 Total: -1.00 -78.59 419.52 2.53 -76.06 By element: Atomic # 1 Polarization: 25.55 SS G_CDS: 0.14 Total: 25.69 kcal Atomic # 6 Polarization: -15.91 SS G_CDS: 6.08 Total: -9.83 kcal Atomic # 7 Polarization: -110.52 SS G_CDS: -4.02 Total: -114.54 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: -1.70 Total: -26.72 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.34 kcal Total: -78.59 2.53 -76.06 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692159059.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.080 kcal (2) G-P(sol) polarization free energy of solvation -78.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds