Wall clock time and date at job start Tue Mar 31 2020 22:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36934 * 120.00041 * 2 1 4 4 H 1.08001 * 119.99850 * 202.67750 * 3 2 1 5 5 C 1.38813 * 120.00076 * 22.68503 * 3 2 1 6 6 N 1.31614 * 119.99579 * 11.49989 * 5 3 2 7 7 Si 1.86795 * 120.00051 * 191.49870 * 5 3 2 8 8 H 1.48505 * 109.47224 * 359.97438 * 7 5 3 9 9 H 1.48498 * 109.47229 * 119.99788 * 7 5 3 10 10 H 1.48497 * 109.47337 * 240.00003 * 7 5 3 11 11 C 1.46504 * 119.99834 * 180.02562 * 2 1 3 12 12 C 1.53002 * 109.47102 * 269.99479 * 11 2 1 13 13 O 1.42905 * 109.46649 * 65.00049 * 12 11 2 14 14 C 1.42903 * 113.99731 * 180.02562 * 13 12 11 15 15 C 1.53000 * 109.46897 * 180.02562 * 14 13 12 16 16 N 1.46499 * 109.47325 * 64.99888 * 15 14 13 17 17 C 1.46500 * 120.00130 * 269.72464 * 16 15 14 18 18 C 1.34779 * 119.99877 * 89.99700 * 16 15 14 19 19 O 1.21279 * 120.00207 * 0.02562 * 18 16 15 20 20 C 1.50706 * 119.99680 * 180.02562 * 18 16 15 21 21 H 1.08995 * 109.47417 * 300.00932 * 20 18 16 22 22 C 1.52946 * 109.47649 * 60.02420 * 20 18 16 23 23 C 1.52946 * 109.81980 * 182.98042 * 22 20 18 24 24 C 1.53181 * 109.44682 * 297.01058 * 23 22 20 25 25 C 1.53150 * 108.88100 * 56.57376 * 24 23 22 26 26 C 1.52847 * 117.67364 * 91.48386 * 25 24 23 27 27 C 1.52809 * 117.75059 * 160.35867 * 25 24 23 28 28 C 1.53153 * 115.00741 * 306.05122 * 25 24 23 29 29 H 1.09000 * 109.46509 * 273.93002 * 1 2 3 30 30 H 1.08998 * 109.46937 * 33.92740 * 1 2 3 31 31 H 1.08998 * 109.47035 * 153.92705 * 1 2 3 32 32 H 0.97003 * 119.99480 * 179.97438 * 6 5 3 33 33 H 1.08999 * 109.47225 * 149.99579 * 11 2 1 34 34 H 1.08997 * 109.47328 * 29.99753 * 11 2 1 35 35 H 1.08996 * 109.47379 * 305.00677 * 12 11 2 36 36 H 1.08991 * 109.47080 * 184.99864 * 12 11 2 37 37 H 1.08997 * 109.47305 * 59.99743 * 14 13 12 38 38 H 1.09002 * 109.47238 * 299.99941 * 14 13 12 39 39 H 1.08995 * 109.47474 * 304.99681 * 15 14 13 40 40 H 1.08999 * 109.46705 * 184.99693 * 15 14 13 41 41 H 1.09000 * 109.46858 * 89.99655 * 17 16 15 42 42 H 1.08998 * 109.47158 * 209.99822 * 17 16 15 43 43 H 1.08996 * 109.46822 * 329.99883 * 17 16 15 44 44 H 1.08999 * 109.40809 * 303.09203 * 22 20 18 45 45 H 1.09001 * 109.41164 * 62.87088 * 22 20 18 46 46 H 1.08994 * 109.47358 * 177.01878 * 23 22 20 47 47 H 1.08999 * 109.47582 * 57.01027 * 23 22 20 48 48 H 1.08994 * 109.57367 * 296.75023 * 24 23 22 49 49 H 1.09003 * 109.56341 * 176.38939 * 24 23 22 50 50 H 1.09007 * 117.50243 * 215.22651 * 26 25 24 51 51 H 1.08998 * 117.50762 * 0.26855 * 26 25 24 52 52 H 1.08998 * 117.50188 * 359.85808 * 27 25 24 53 53 H 1.09000 * 117.49983 * 144.89630 * 27 25 24 54 54 H 1.08998 * 109.56800 * 294.12683 * 28 25 24 55 55 H 1.08994 * 109.56807 * 173.76251 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1671 1.2220 -0.3606 5 6 1.5362 2.3416 0.4636 6 7 0.3914 2.2655 1.1085 7 14 2.3355 4.0046 0.1724 8 1 3.6080 3.8189 -0.5703 9 1 1.4191 4.8620 -0.6215 10 1 2.6152 4.6548 1.4778 11 6 2.1975 -1.2688 -0.0006 12 6 2.4526 -1.7110 1.4418 13 8 1.2061 -1.9944 2.0805 14 6 1.3325 -2.4178 3.4395 15 6 -0.0565 -2.6923 4.0194 16 7 -0.6645 -3.8243 3.3157 17 6 -1.4836 -3.5913 2.1236 18 6 -0.4749 -5.0796 3.7682 19 8 0.1987 -5.2721 4.7582 20 6 -1.1000 -6.2440 3.0440 21 1 -2.1837 -6.1277 3.0361 22 6 -0.5813 -6.2879 1.6058 23 6 -1.2664 -7.4220 0.8418 24 6 -0.9032 -8.7634 1.4862 25 6 -1.3007 -8.7267 2.9648 26 6 -2.6964 -9.2260 3.3372 27 6 -1.4640 -10.0612 3.6909 28 6 -0.7314 -7.5475 3.7592 29 1 -0.3632 0.0704 1.0253 30 1 -0.3633 0.8527 -0.5736 31 1 -0.3633 -0.9231 -0.4517 32 1 -0.0371 3.0730 1.4328 33 1 3.1499 -1.1383 -0.5144 34 1 1.6084 -2.0282 -0.5147 35 1 2.9643 -0.9140 1.9811 36 1 3.0732 -2.6070 1.4426 37 1 1.8208 -1.6352 4.0201 38 1 1.9301 -3.3284 3.4823 39 1 -0.6829 -1.8089 3.8960 40 1 0.0328 -2.9292 5.0796 41 1 -0.8499 -3.6155 1.2371 42 1 -2.2443 -4.3682 2.0479 43 1 -1.9658 -2.6167 2.1990 44 1 -0.7953 -5.3388 1.1144 45 1 0.4958 -6.4555 1.6141 46 1 -0.9323 -7.4150 -0.1957 47 1 -2.3469 -7.2828 0.8766 48 1 0.1705 -8.9306 1.4008 49 1 -1.4408 -9.5673 0.9834 50 1 -3.2116 -8.7184 4.1528 51 1 -3.3342 -9.5864 2.5301 52 1 -1.2910 -10.9713 3.1165 53 1 -1.1685 -10.1033 4.7393 54 1 0.3533 -7.6372 3.8188 55 1 -1.1551 -7.5454 4.7634 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692302063.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:45 Heat of formation + Delta-G solvation = -58.112274 kcal Electronic energy + Delta-G solvation = -31192.561230 eV Core-core repulsion = 27230.223607 eV Total energy + Delta-G solvation = -3962.337623 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.56816 -39.75622 -38.91402 -37.23079 -36.50404 -35.66066 -33.45447 -32.32503 -31.15618 -29.64160 -28.32677 -27.77916 -27.52111 -25.22034 -24.74202 -23.37909 -23.22536 -22.37870 -22.11473 -20.04210 -19.61720 -18.75861 -18.01639 -17.52604 -17.18724 -16.97791 -16.54652 -16.46220 -16.08997 -15.95067 -15.38562 -15.23596 -15.13614 -14.90255 -14.53323 -14.36441 -14.06923 -13.94454 -13.61859 -13.56307 -13.45720 -13.21833 -13.02510 -12.96137 -12.78332 -12.68151 -12.61913 -12.43045 -12.35524 -12.26829 -12.09226 -11.97092 -11.82493 -11.78018 -11.76376 -11.67732 -11.45499 -10.80623 -10.67101 -10.60334 -10.42400 -10.35038 -9.66218 -8.70577 -7.76843 -5.23827 1.46356 1.47922 1.57532 1.59046 2.02230 2.53368 2.88749 2.89764 3.36109 3.43677 3.68563 3.78009 3.83291 3.92779 4.04672 4.09908 4.14480 4.21090 4.25059 4.29910 4.32427 4.39703 4.48895 4.51535 4.52316 4.57689 4.61367 4.66124 4.69102 4.74366 4.79446 4.83703 4.93124 4.95274 5.00892 5.01275 5.07260 5.08312 5.13513 5.17495 5.18033 5.28200 5.32372 5.32595 5.43785 5.45780 5.48974 5.53457 5.69169 5.89359 6.36028 6.39096 6.47630 7.14411 7.21982 7.94941 8.39330 9.26096 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.023512 B = 0.002362 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.610950 B =11853.854607 C =12217.036154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.195 3.805 2 N -0.612 5.612 3 C -0.260 4.260 4 H 0.070 0.930 5 C -0.054 4.054 6 N -0.933 5.933 7 Si 0.964 3.036 8 H -0.267 1.267 9 H -0.292 1.292 10 H -0.296 1.296 11 C 0.151 3.849 12 C 0.052 3.948 13 O -0.377 6.377 14 C 0.053 3.947 15 C 0.124 3.876 16 N -0.602 5.602 17 C 0.083 3.917 18 C 0.511 3.489 19 O -0.588 6.588 20 C -0.090 4.090 21 H 0.115 0.885 22 C -0.119 4.119 23 C -0.108 4.108 24 C -0.080 4.080 25 C -0.129 4.129 26 C -0.166 4.166 27 C -0.178 4.178 28 C -0.054 4.054 29 H 0.005 0.995 30 H 0.008 0.992 31 H 0.024 0.976 32 H 0.245 0.755 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.018 0.982 36 H 0.050 0.950 37 H 0.044 0.956 38 H 0.038 0.962 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.062 0.938 42 H 0.097 0.903 43 H 0.068 0.932 44 H 0.085 0.915 45 H 0.049 0.951 46 H 0.076 0.924 47 H 0.077 0.923 48 H 0.059 0.941 49 H 0.078 0.922 50 H 0.091 0.909 51 H 0.107 0.893 52 H 0.104 0.896 53 H 0.088 0.912 54 H 0.051 0.949 55 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.975 -23.926 1.221 24.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.335 5.335 3 C -0.390 4.390 4 H 0.088 0.912 5 C -0.249 4.249 6 N -0.580 5.580 7 Si 0.793 3.207 8 H -0.191 1.191 9 H -0.219 1.219 10 H -0.223 1.223 11 C 0.025 3.975 12 C -0.027 4.027 13 O -0.296 6.296 14 C -0.025 4.025 15 C 0.001 3.999 16 N -0.333 5.333 17 C -0.059 4.059 18 C 0.301 3.699 19 O -0.468 6.468 20 C -0.111 4.111 21 H 0.133 0.867 22 C -0.157 4.157 23 C -0.145 4.145 24 C -0.118 4.118 25 C -0.129 4.129 26 C -0.203 4.203 27 C -0.215 4.215 28 C -0.092 4.092 29 H 0.023 0.977 30 H 0.027 0.973 31 H 0.042 0.958 32 H 0.054 0.946 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.036 0.964 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.056 0.944 39 H 0.104 0.896 40 H 0.110 0.890 41 H 0.080 0.920 42 H 0.115 0.885 43 H 0.087 0.913 44 H 0.103 0.897 45 H 0.068 0.932 46 H 0.095 0.905 47 H 0.095 0.905 48 H 0.078 0.922 49 H 0.096 0.904 50 H 0.109 0.891 51 H 0.125 0.875 52 H 0.122 0.878 53 H 0.106 0.894 54 H 0.070 0.930 55 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.908 -23.863 1.657 24.898 hybrid contribution 0.908 1.486 0.668 1.865 sum -6.000 -22.377 2.324 23.284 Atomic orbital electron populations 1.20365 0.82388 0.94942 0.97333 1.44110 1.02402 1.01252 1.85746 1.19570 0.98272 0.86751 1.34409 0.91241 1.25746 0.98604 1.01588 0.98968 1.70260 1.19435 1.26999 1.41311 0.85251 0.78125 0.80519 0.76837 1.19117 1.21874 1.22341 1.21055 0.96758 0.87349 0.92359 1.23227 0.85698 0.96983 0.96804 1.87917 1.30095 1.87321 1.24231 1.22773 0.97976 0.97329 0.84399 1.21422 0.92835 0.89223 0.96440 1.47845 1.50512 1.05614 1.29379 1.22067 0.94550 1.03053 0.86226 1.21350 0.80053 0.84607 0.83935 1.90644 1.42168 1.85433 1.28597 1.21267 1.02029 0.91479 0.96309 0.86738 1.21740 1.00022 1.01322 0.92611 1.21477 1.01158 0.92945 0.98936 1.21172 1.01067 0.98065 0.91475 1.21453 1.00590 0.94760 0.96139 1.23085 0.90340 1.03307 1.03590 1.23044 1.02774 0.94660 1.01001 1.20813 1.00082 0.91173 0.97112 0.97683 0.97306 0.95769 0.94603 0.91386 0.91860 0.96353 0.93154 0.93813 0.94365 0.89567 0.88980 0.91959 0.88499 0.91294 0.89695 0.93222 0.90531 0.90453 0.92199 0.90354 0.89068 0.87509 0.87794 0.89395 0.92990 0.92482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.62 8.61 127.77 1.10 10.72 16 2 N -0.61 -30.52 2.89 -726.92 -2.10 -32.62 16 3 C -0.26 -14.20 9.67 84.03 0.81 -13.39 16 4 H 0.07 3.68 7.85 -2.91 -0.02 3.66 16 5 C -0.05 -3.04 5.12 84.86 0.43 -2.60 16 6 N -0.93 -55.33 10.61 21.65 0.23 -55.10 16 7 Si 0.96 45.33 29.57 68.60 2.03 47.36 16 8 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 9 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 10 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 11 C 0.15 5.99 6.11 86.38 0.53 6.52 16 12 C 0.05 1.98 6.28 71.98 0.45 2.43 16 13 O -0.38 -14.33 9.47 -148.98 -1.41 -15.74 16 14 C 0.05 1.79 6.28 71.98 0.45 2.25 16 15 C 0.12 3.68 5.86 86.38 0.51 4.19 16 16 N -0.60 -15.83 2.84 -846.77 -2.40 -18.23 16 17 C 0.08 1.77 8.47 127.77 1.08 2.85 16 18 C 0.51 13.81 7.07 87.66 0.62 14.43 16 19 O -0.59 -20.27 15.54 -3.03 -0.05 -20.32 16 20 C -0.09 -1.74 1.73 -11.49 -0.02 -1.76 16 21 H 0.11 1.79 7.39 -2.39 -0.02 1.77 16 22 C -0.12 -2.04 4.76 30.56 0.15 -1.89 16 23 C -0.11 -1.34 5.93 30.64 0.18 -1.16 16 24 C -0.08 -1.03 5.67 30.70 0.17 -0.86 16 25 C -0.13 -1.92 1.97 -52.19 -0.10 -2.03 16 26 C -0.17 -2.05 9.93 30.55 0.30 -1.75 16 27 C -0.18 -2.39 9.99 30.54 0.31 -2.08 16 28 C -0.05 -1.08 4.27 30.71 0.13 -0.95 16 29 H 0.00 0.26 7.43 -2.39 -0.02 0.25 16 30 H 0.01 0.45 7.20 -2.39 -0.02 0.43 16 31 H 0.02 1.01 7.85 -2.39 -0.02 0.99 16 32 H 0.24 14.14 8.31 -92.71 -0.77 13.37 16 33 H 0.07 2.53 8.03 -2.39 -0.02 2.51 16 34 H 0.06 2.25 7.87 -2.39 -0.02 2.23 16 35 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.09 2.60 7.89 -2.39 -0.02 2.58 16 40 H 0.09 2.70 7.42 -2.39 -0.02 2.68 16 41 H 0.06 1.44 6.90 -2.39 -0.02 1.42 16 42 H 0.10 1.44 6.04 -2.39 -0.01 1.42 16 43 H 0.07 1.58 7.89 -2.39 -0.02 1.56 16 44 H 0.08 1.44 4.49 -2.39 -0.01 1.43 16 45 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 47 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 49 H 0.08 0.79 8.09 -2.39 -0.02 0.77 16 50 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 51 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 52 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 53 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 54 H 0.05 1.26 8.02 -2.39 -0.02 1.24 16 55 H 0.06 1.24 8.09 -2.39 -0.02 1.23 16 Total: -1.00 -68.75 424.41 4.24 -64.51 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: 0.83 Total: 15.20 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: 7.11 Total: 14.94 kcal Atomic # 7 Polarization: -101.68 SS G_CDS: -4.27 Total: -105.95 kcal Atomic # 8 Polarization: -34.60 SS G_CDS: -1.46 Total: -36.06 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -68.75 4.24 -64.51 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692302063.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.399 kcal (2) G-P(sol) polarization free energy of solvation -68.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds