Wall clock time and date at job start Tue Mar 31 2020 22:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36933 * 120.00068 * 2 1 4 4 H 1.07998 * 119.99974 * 158.22583 * 3 2 1 5 5 C 1.38805 * 119.99901 * 337.94234 * 3 2 1 6 6 N 1.31625 * 120.00204 * 347.56130 * 5 3 2 7 7 Si 1.86798 * 120.00052 * 167.55686 * 5 3 2 8 8 H 1.48499 * 109.47132 * 0.02562 * 7 5 3 9 9 H 1.48507 * 109.47296 * 120.00449 * 7 5 3 10 10 H 1.48500 * 109.47176 * 240.00149 * 7 5 3 11 11 C 1.46503 * 119.99740 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.47109 * 269.99918 * 11 2 1 13 13 O 1.42899 * 109.47072 * 65.00406 * 12 11 2 14 14 C 1.42898 * 113.99504 * 179.97438 * 13 12 11 15 15 C 1.53001 * 109.46801 * 179.97438 * 14 13 12 16 16 N 1.46509 * 109.46939 * 65.00331 * 15 14 13 17 17 C 1.46496 * 120.00085 * 89.99594 * 16 15 14 18 18 C 1.34775 * 119.99669 * 270.00045 * 16 15 14 19 19 O 1.21278 * 120.00474 * 4.54998 * 18 16 15 20 20 C 1.50703 * 119.99842 * 184.55028 * 18 16 15 21 21 H 1.09004 * 109.46830 * 46.39428 * 20 18 16 22 22 C 1.52940 * 109.47787 * 286.38684 * 20 18 16 23 23 C 1.52936 * 109.82411 * 177.02185 * 22 20 18 24 24 C 1.53180 * 109.45412 * 62.98241 * 23 22 20 25 25 C 1.53155 * 108.87945 * 303.43623 * 24 23 22 26 26 C 1.52851 * 117.67458 * 268.50720 * 25 24 23 27 27 C 1.52807 * 117.74783 * 199.62769 * 25 24 23 28 28 C 1.53143 * 115.01045 * 53.93741 * 25 24 23 29 29 H 1.08996 * 109.47201 * 87.27430 * 1 2 3 30 30 H 1.09002 * 109.46895 * 207.27508 * 1 2 3 31 31 H 1.08996 * 109.47074 * 327.26957 * 1 2 3 32 32 H 0.97003 * 119.99910 * 180.02562 * 6 5 3 33 33 H 1.08994 * 109.47228 * 30.00189 * 11 2 1 34 34 H 1.09003 * 109.46783 * 150.00019 * 11 2 1 35 35 H 1.08998 * 109.47133 * 185.00295 * 12 11 2 36 36 H 1.08999 * 109.47314 * 305.00111 * 12 11 2 37 37 H 1.08991 * 109.47458 * 299.99700 * 14 13 12 38 38 H 1.08999 * 109.47170 * 60.00357 * 14 13 12 39 39 H 1.08997 * 109.47459 * 184.99870 * 15 14 13 40 40 H 1.08999 * 109.47374 * 305.00408 * 15 14 13 41 41 H 1.09011 * 109.46684 * 86.58560 * 17 16 15 42 42 H 1.08998 * 109.47478 * 206.58235 * 17 16 15 43 43 H 1.09000 * 109.47058 * 326.58953 * 17 16 15 44 44 H 1.08999 * 109.40902 * 297.13213 * 22 20 18 45 45 H 1.09002 * 109.41262 * 56.90816 * 22 20 18 46 46 H 1.09010 * 109.47169 * 182.97160 * 23 22 20 47 47 H 1.08997 * 109.47563 * 302.97974 * 23 22 20 48 48 H 1.09005 * 109.56948 * 63.25301 * 24 23 22 49 49 H 1.08994 * 109.57087 * 183.49389 * 24 23 22 50 50 H 1.08998 * 117.50886 * 359.72138 * 26 25 24 51 51 H 1.08999 * 117.50579 * 144.78538 * 26 25 24 52 52 H 1.09001 * 117.50230 * 215.10444 * 27 25 24 53 53 H 1.09000 * 117.50206 * 0.12153 * 27 25 24 54 54 H 1.09000 * 109.57278 * 186.24068 * 28 25 24 55 55 H 1.08993 * 109.57086 * 65.87855 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1719 1.2192 0.3469 5 6 1.5318 2.3440 -0.4514 6 7 0.3900 2.2700 -1.1020 7 14 2.3207 4.0074 -0.1355 8 1 3.5911 3.8192 0.6101 9 1 2.6023 4.6759 -1.4314 10 1 1.3963 4.8497 0.6653 11 6 2.1975 -1.2688 0.0006 12 6 2.4525 -1.7098 1.4433 13 8 1.2060 -1.9927 2.0823 14 6 1.3325 -2.4160 3.4412 15 6 -0.0566 -2.6888 4.0218 16 7 -0.6662 -3.8203 3.3185 17 6 -0.4614 -5.1849 3.8104 18 6 -1.4153 -3.6057 2.2188 19 8 -1.5173 -2.4863 1.7635 20 6 -2.1261 -4.7568 1.5549 21 1 -2.6314 -5.3569 2.3118 22 6 -1.1089 -5.6242 0.8120 23 6 -1.8112 -6.8356 0.1970 24 6 -2.8324 -6.3606 -0.8412 25 6 -3.8104 -5.3933 -0.1679 26 6 -5.0881 -5.9791 0.4326 27 6 -5.1550 -5.1501 -0.8520 28 6 -3.1575 -4.2149 0.5604 29 1 -0.3633 0.0489 -1.0265 30 1 -0.3633 -0.9134 0.4710 31 1 -0.3633 0.8645 0.5556 32 1 -0.0415 3.0794 -1.4178 33 1 1.6084 -2.0286 -0.5129 34 1 3.1499 -1.1387 -0.5133 35 1 3.0732 -2.6058 1.4450 36 1 2.9642 -0.9123 1.9820 37 1 1.9298 -3.3267 3.4840 38 1 1.8211 -1.6334 4.0216 39 1 0.0328 -2.9256 5.0819 40 1 -0.6820 -1.8047 3.8983 41 1 -1.2132 -5.4156 4.5653 42 1 -0.5511 -5.8873 2.9818 43 1 0.5324 -5.2672 4.2505 44 1 -0.6408 -5.0371 0.0219 45 1 -0.3443 -5.9645 1.5104 46 1 -1.0737 -7.4769 -0.2857 47 1 -2.3226 -7.3954 0.9801 48 1 -2.3160 -5.8505 -1.6544 49 1 -3.3776 -7.2179 -1.2359 50 1 -5.2379 -7.0552 0.3456 51 1 -5.4699 -5.5234 1.3462 52 1 -5.5809 -4.1491 -0.7834 53 1 -5.3486 -5.6806 -1.7843 54 1 -3.9196 -3.6494 1.0965 55 1 -2.6618 -3.5679 -0.1632 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692302064.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:49 Heat of formation + Delta-G solvation = -55.790983 kcal Electronic energy + Delta-G solvation = -31863.501988 eV Core-core repulsion = 27901.265024 eV Total energy + Delta-G solvation = -3962.236964 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.39282 -39.69816 -38.81961 -37.21757 -36.35247 -35.66824 -33.49441 -32.27293 -31.06441 -29.57910 -28.38025 -27.81463 -27.43795 -25.18864 -24.74292 -23.37918 -23.08904 -22.31610 -22.17180 -19.93002 -19.55737 -18.75370 -17.89472 -17.60045 -17.03956 -16.94007 -16.51584 -16.36808 -16.10071 -15.84398 -15.39339 -15.24426 -15.00773 -14.94758 -14.51181 -14.34420 -13.95989 -13.88651 -13.58767 -13.54486 -13.37297 -13.20100 -13.16522 -12.84220 -12.73559 -12.67090 -12.63620 -12.39725 -12.35388 -12.22667 -12.05593 -11.92813 -11.80264 -11.77893 -11.76407 -11.69764 -11.42727 -10.80169 -10.64248 -10.52054 -10.35946 -10.23559 -9.48147 -8.74902 -7.79337 -5.28482 1.42112 1.44547 1.55237 1.87171 2.17378 2.50594 2.89119 2.98717 3.32707 3.55230 3.70908 3.74580 3.84398 3.93576 4.11079 4.18723 4.20194 4.21178 4.26075 4.28741 4.38607 4.42921 4.49950 4.50746 4.52727 4.57708 4.58847 4.65639 4.69488 4.79474 4.82426 4.91256 4.92240 4.93113 5.00822 5.06447 5.10294 5.11245 5.12945 5.17655 5.23105 5.29623 5.31194 5.32062 5.46202 5.50301 5.54970 5.60913 5.70515 5.74656 6.33059 6.54758 6.62270 7.16161 7.49620 7.89775 8.38616 9.24399 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012392 B = 0.003260 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.992521 B = 8585.580354 C = 9815.321951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.202 3.798 2 N -0.611 5.611 3 C -0.261 4.261 4 H 0.074 0.926 5 C -0.063 4.063 6 N -0.944 5.944 7 Si 0.974 3.026 8 H -0.262 1.262 9 H -0.289 1.289 10 H -0.294 1.294 11 C 0.151 3.849 12 C 0.055 3.945 13 O -0.381 6.381 14 C 0.039 3.961 15 C 0.122 3.878 16 N -0.616 5.616 17 C 0.062 3.938 18 C 0.501 3.499 19 O -0.560 6.560 20 C -0.085 4.085 21 H 0.117 0.883 22 C -0.110 4.110 23 C -0.104 4.104 24 C -0.083 4.083 25 C -0.128 4.128 26 C -0.155 4.155 27 C -0.188 4.188 28 C -0.059 4.059 29 H -0.021 1.021 30 H 0.041 0.959 31 H -0.001 1.001 32 H 0.245 0.755 33 H 0.036 0.964 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.029 0.971 37 H 0.064 0.936 38 H 0.049 0.951 39 H 0.127 0.873 40 H 0.051 0.949 41 H 0.073 0.927 42 H 0.092 0.908 43 H 0.084 0.916 44 H 0.038 0.962 45 H 0.091 0.909 46 H 0.079 0.921 47 H 0.086 0.914 48 H 0.049 0.951 49 H 0.082 0.918 50 H 0.114 0.886 51 H 0.092 0.908 52 H 0.079 0.921 53 H 0.104 0.896 54 H 0.050 0.950 55 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.057 -27.040 11.288 29.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.335 5.335 3 C -0.392 4.392 4 H 0.092 0.908 5 C -0.257 4.257 6 N -0.591 5.591 7 Si 0.802 3.198 8 H -0.186 1.186 9 H -0.216 1.216 10 H -0.221 1.221 11 C 0.025 3.975 12 C -0.024 4.024 13 O -0.300 6.300 14 C -0.039 4.039 15 C -0.001 4.001 16 N -0.350 5.350 17 C -0.079 4.079 18 C 0.289 3.711 19 O -0.436 6.436 20 C -0.106 4.106 21 H 0.135 0.865 22 C -0.148 4.148 23 C -0.142 4.142 24 C -0.120 4.120 25 C -0.128 4.128 26 C -0.191 4.191 27 C -0.225 4.225 28 C -0.097 4.097 29 H -0.002 1.002 30 H 0.059 0.941 31 H 0.018 0.982 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.047 0.953 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.145 0.855 40 H 0.069 0.931 41 H 0.092 0.908 42 H 0.110 0.890 43 H 0.103 0.897 44 H 0.056 0.944 45 H 0.109 0.891 46 H 0.098 0.902 47 H 0.104 0.896 48 H 0.068 0.932 49 H 0.101 0.899 50 H 0.132 0.868 51 H 0.110 0.890 52 H 0.098 0.902 53 H 0.122 0.878 54 H 0.068 0.932 55 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -5.370 -26.322 10.901 28.992 hybrid contribution 0.381 1.898 -0.120 1.940 sum -4.989 -24.424 10.781 27.160 Atomic orbital electron populations 1.20249 0.82767 0.96217 0.95124 1.44026 1.01986 1.01491 1.85948 1.19641 0.97799 0.86817 1.34901 0.90834 1.25901 0.98574 1.02245 0.98948 1.70347 1.20146 1.27128 1.41517 0.85096 0.77969 0.79569 0.77163 1.18566 1.21584 1.22120 1.20906 0.95950 0.87034 0.93628 1.23123 0.86109 0.97681 0.95459 1.88173 1.29278 1.87482 1.25041 1.23047 0.98185 0.98613 0.84087 1.21474 0.92235 0.89728 0.96661 1.47856 1.50620 1.08520 1.28015 1.22315 1.03275 0.81023 1.01324 1.21283 0.79050 0.90513 0.80233 1.90792 1.62750 1.27051 1.63057 1.21222 0.96593 0.94579 0.98243 0.86543 1.21621 0.97169 0.96487 0.99487 1.21483 0.97852 0.96100 0.98737 1.21186 0.96128 0.97360 0.97363 1.21424 0.89554 0.98553 1.03292 1.23078 0.99234 1.00261 0.96554 1.23045 1.00218 1.01448 0.97790 1.20819 0.96751 0.95456 0.96713 1.00248 0.94102 0.98208 0.94580 0.94559 0.91520 0.92050 0.95279 0.91813 0.93278 0.85495 0.93086 0.90831 0.88975 0.89704 0.94351 0.89121 0.90208 0.89556 0.93211 0.89916 0.86815 0.88967 0.90190 0.87803 0.93169 0.94371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.20 12.38 8.77 127.77 1.12 13.50 16 2 N -0.61 -35.34 2.89 -726.95 -2.10 -37.44 16 3 C -0.26 -15.80 9.67 84.03 0.81 -14.99 16 4 H 0.07 4.20 7.86 -2.91 -0.02 4.18 16 5 C -0.06 -3.85 5.10 84.86 0.43 -3.42 16 6 N -0.94 -62.33 10.64 21.65 0.23 -62.10 16 7 Si 0.97 48.69 29.57 68.60 2.03 50.71 16 8 H -0.26 -12.14 7.11 99.48 0.71 -11.44 16 9 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 10 H -0.29 -14.75 7.11 99.48 0.71 -14.04 16 11 C 0.15 7.00 6.06 86.38 0.52 7.52 16 12 C 0.06 2.14 6.28 71.98 0.45 2.59 16 13 O -0.38 -15.17 7.81 -136.95 -1.07 -16.24 16 14 C 0.04 1.09 6.28 71.98 0.45 1.54 16 15 C 0.12 3.04 5.86 86.38 0.51 3.55 16 16 N -0.62 -14.17 2.86 -846.74 -2.42 -16.58 16 17 C 0.06 0.71 9.92 127.77 1.27 1.98 16 18 C 0.50 15.16 6.61 87.66 0.58 15.74 16 19 O -0.56 -24.20 12.96 9.01 0.12 -24.08 16 20 C -0.09 -1.88 1.71 -11.50 -0.02 -1.90 16 21 H 0.12 1.86 7.71 -2.39 -0.02 1.85 16 22 C -0.11 -2.06 4.75 30.55 0.15 -1.91 16 23 C -0.10 -1.37 5.93 30.63 0.18 -1.19 16 24 C -0.08 -1.37 5.67 30.71 0.17 -1.20 16 25 C -0.13 -2.52 1.97 -52.20 -0.10 -2.62 16 26 C -0.15 -2.33 9.93 30.56 0.30 -2.03 16 27 C -0.19 -3.57 9.99 30.54 0.31 -3.26 16 28 C -0.06 -1.59 4.41 30.70 0.14 -1.45 16 29 H -0.02 -1.38 7.51 -2.39 -0.02 -1.40 16 30 H 0.04 2.41 5.54 -2.39 -0.01 2.39 16 31 H 0.00 -0.06 7.10 -2.39 -0.02 -0.08 16 32 H 0.25 15.58 8.31 -92.71 -0.77 14.81 16 33 H 0.04 1.68 8.07 -2.39 -0.02 1.66 16 34 H 0.07 2.90 8.04 -2.39 -0.02 2.88 16 35 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.13 1.97 8.07 -2.39 -0.02 1.96 16 40 H 0.05 1.70 7.49 -2.39 -0.02 1.68 16 41 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 42 H 0.09 0.89 4.05 -2.39 -0.01 0.88 16 43 H 0.08 0.71 8.10 -2.39 -0.02 0.69 16 44 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.09 1.32 5.40 -2.39 -0.01 1.31 16 46 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 47 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 48 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 49 H 0.08 1.04 8.10 -2.39 -0.02 1.02 16 50 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 51 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 52 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 53 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 54 H 0.05 1.44 8.09 -2.39 -0.02 1.42 16 55 H 0.04 1.34 7.84 -2.39 -0.02 1.32 16 Total: -1.00 -84.66 420.08 4.89 -79.77 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: 0.83 Total: 13.51 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: 7.27 Total: 12.46 kcal Atomic # 7 Polarization: -111.84 SS G_CDS: -4.29 Total: -116.13 kcal Atomic # 8 Polarization: -39.37 SS G_CDS: -0.95 Total: -40.33 kcal Atomic # 14 Polarization: 48.69 SS G_CDS: 2.03 Total: 50.71 kcal Total: -84.66 4.89 -79.77 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692302064.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.983 kcal (2) G-P(sol) polarization free energy of solvation -84.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds