Wall clock time and date at job start Tue Mar 31 2020 21:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50709 * 119.99747 * 2 1 4 4 C 1.50705 * 120.00325 * 179.72551 * 2 1 3 5 5 H 1.08998 * 109.46341 * 5.27203 * 4 2 1 6 6 C 1.52999 * 109.47025 * 245.27775 * 4 2 1 7 7 C 1.50705 * 109.46975 * 174.99924 * 6 4 2 8 8 O 1.21281 * 119.99846 * 354.66701 * 7 6 4 9 9 N 1.34772 * 119.99852 * 174.66943 * 7 6 4 10 10 C 1.46960 * 120.36347 * 184.55897 * 9 7 6 11 11 C 1.51801 * 109.39517 * 291.89585 * 10 9 7 12 12 C 1.53794 * 109.06127 * 287.19265 * 11 10 9 13 13 C 1.52439 * 109.40421 * 77.78724 * 12 11 10 14 14 C 1.53949 * 110.73781 * 246.27217 * 13 12 11 15 15 C 1.52882 * 109.72542 * 44.36417 * 14 13 12 16 16 H 1.08995 * 109.48550 * 312.92360 * 15 14 13 17 17 N 1.46502 * 109.49771 * 192.88077 * 15 14 13 18 18 C 1.36938 * 119.99806 * 155.08527 * 17 15 14 19 19 H 1.07995 * 120.00217 * 359.97438 * 18 17 15 20 20 C 1.38813 * 119.99929 * 179.97438 * 18 17 15 21 21 N 1.31622 * 119.99777 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00015 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46816 * 90.00247 * 22 20 18 24 24 H 1.48502 * 109.47475 * 210.00085 * 22 20 18 25 25 H 1.48498 * 109.47441 * 330.00519 * 22 20 18 26 26 C 1.45334 * 120.36896 * 4.83172 * 9 7 6 27 27 O 1.42901 * 109.47002 * 125.27355 * 4 2 1 28 28 C 1.42899 * 113.99972 * 269.99718 * 27 4 2 29 29 C 1.52998 * 109.47161 * 180.02562 * 28 27 4 30 30 H 1.08004 * 120.00136 * 359.97438 * 1 2 3 31 31 H 1.08001 * 119.99756 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46495 * 179.72541 * 3 2 1 33 33 H 1.08993 * 109.46911 * 299.72359 * 3 2 1 34 34 H 1.08998 * 109.46774 * 59.72850 * 3 2 1 35 35 H 1.09001 * 109.46733 * 294.99713 * 6 4 2 36 36 H 1.08997 * 109.47431 * 54.99292 * 6 4 2 37 37 H 1.08995 * 109.53853 * 51.52355 * 10 9 7 38 38 H 1.09002 * 109.53466 * 171.75343 * 10 9 7 39 39 H 1.09008 * 109.61078 * 167.29506 * 11 10 9 40 40 H 1.09000 * 109.58853 * 47.07738 * 11 10 9 41 41 H 1.09006 * 109.48435 * 317.81224 * 12 11 10 42 42 H 1.09001 * 109.48339 * 197.77436 * 12 11 10 43 43 H 1.09002 * 109.22238 * 125.94891 * 13 12 11 44 44 H 1.09003 * 109.22337 * 6.59956 * 13 12 11 45 45 H 1.08996 * 109.42717 * 284.29168 * 14 13 12 46 46 H 1.08995 * 109.43222 * 164.43921 * 14 13 12 47 47 H 0.96995 * 120.00232 * 335.07425 * 17 15 14 48 48 H 0.97000 * 119.99502 * 179.97438 * 21 20 18 49 49 H 1.09001 * 109.67593 * 256.39067 * 26 9 7 50 50 H 1.09002 * 109.67455 * 16.92477 * 26 9 7 51 51 H 1.08999 * 109.47407 * 300.00406 * 28 27 4 52 52 H 1.09007 * 109.46729 * 60.00333 * 28 27 4 53 53 H 1.09007 * 109.46684 * 60.00183 * 29 28 27 54 54 H 1.08994 * 109.47454 * 180.02562 * 29 28 27 55 55 H 1.09009 * 109.47195 * 300.00499 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0635 -1.3051 0.0063 5 1 1.3589 -2.1318 -0.0842 6 6 2.8410 -1.4388 1.3172 7 6 3.4952 -2.7951 1.3771 8 8 3.2759 -3.6130 0.5089 9 7 4.3241 -3.0990 2.3955 10 6 5.0439 -4.3802 2.4104 11 6 4.0526 -5.5130 2.6065 12 6 3.5574 -5.5007 4.0625 13 6 2.5187 -4.3984 4.2348 14 6 3.0438 -3.2963 5.1726 15 6 4.4893 -2.9553 4.8096 16 1 5.0611 -3.8756 4.6910 17 7 5.0831 -2.1449 5.8758 18 6 6.4407 -2.1381 6.0552 19 1 7.0735 -2.7304 5.4111 20 6 7.0034 -1.3698 7.0651 21 7 6.2321 -0.6482 7.8505 22 14 8.8552 -1.3610 7.3104 23 1 9.4578 -0.2787 6.4914 24 1 9.1636 -1.1270 8.7441 25 1 9.4164 -2.6702 6.8906 26 6 4.5113 -2.1660 3.4939 27 8 2.9755 -1.3338 -1.0936 28 6 2.4235 -1.8821 -2.2922 29 6 3.4824 -1.8636 -3.3963 30 1 -0.5400 0.9353 0.0004 31 1 -0.5400 -0.9353 0.0004 32 1 3.1351 1.1060 0.0049 33 1 1.8038 1.8746 -0.8924 34 1 1.7964 1.8788 0.8875 35 1 3.6059 -0.6638 1.3665 36 1 2.1568 -1.3279 2.1584 37 1 5.5621 -4.5182 1.4615 38 1 5.7674 -4.3823 3.2257 39 1 4.5390 -6.4654 2.3952 40 1 3.2064 -5.3789 1.9328 41 1 4.3983 -5.3155 4.7310 42 1 3.1080 -6.4645 4.3018 43 1 1.6089 -4.8254 4.6569 44 1 2.2920 -3.9635 3.2614 45 1 3.0022 -3.6473 6.2037 46 1 2.4242 -2.4057 5.0683 47 1 4.5148 -1.6130 6.4545 48 1 6.6253 -0.1117 8.5565 49 1 5.4704 -1.6595 3.3858 50 1 3.7058 -1.4316 3.4930 51 1 2.1070 -2.9090 -2.1099 52 1 1.5645 -1.2867 -2.6020 53 1 4.3411 -2.4592 -3.0861 54 1 3.0613 -2.2814 -4.3107 55 1 3.7993 -0.8367 -3.5787 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692322488.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:09 Heat of formation + Delta-G solvation = -71.141315 kcal Electronic energy + Delta-G solvation = -31953.999785 eV Core-core repulsion = 27991.097181 eV Total energy + Delta-G solvation = -3962.902605 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.63295 -39.78629 -38.55498 -36.24093 -36.07633 -35.21342 -33.99561 -32.67698 -31.79757 -30.82911 -28.51866 -28.21905 -27.37935 -25.88076 -24.89405 -23.64772 -23.29271 -22.77623 -20.79855 -19.82179 -19.56547 -19.16044 -18.07683 -17.73101 -17.17052 -17.09178 -16.55419 -16.41236 -15.85039 -15.53858 -15.38633 -15.12373 -15.03013 -14.83249 -14.74168 -14.46010 -14.17079 -14.02934 -13.86632 -13.68718 -13.41201 -13.16285 -13.11928 -12.94937 -12.85351 -12.74876 -12.59759 -12.55078 -12.47674 -12.26690 -12.15302 -11.95658 -11.90212 -11.77257 -11.74620 -11.49526 -11.41967 -11.16876 -10.98353 -10.56344 -10.45792 -10.07315 -9.48797 -8.94253 -7.91477 -5.19464 1.19256 1.49855 1.50576 1.58119 1.71641 2.10894 2.58789 2.79304 3.42108 3.47018 3.77868 3.84895 3.90802 3.96421 4.04744 4.08494 4.13966 4.20724 4.23287 4.29806 4.33616 4.40742 4.40976 4.50857 4.54020 4.59318 4.60515 4.70736 4.71749 4.78830 4.81244 4.84848 4.88771 4.92028 4.98867 5.02120 5.05747 5.08046 5.15398 5.15666 5.21284 5.24613 5.35100 5.39763 5.43200 5.52791 5.57799 5.63683 5.74692 5.81502 6.30683 6.35558 6.54342 7.26012 7.37951 8.12221 8.35543 9.31487 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011406 B = 0.003290 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.155642 B = 8508.047897 C = 9199.965524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.159 4.159 3 C -0.112 4.112 4 C 0.147 3.853 5 H 0.065 0.935 6 C -0.135 4.135 7 C 0.519 3.481 8 O -0.566 6.566 9 N -0.596 5.596 10 C 0.115 3.885 11 C -0.127 4.127 12 C -0.124 4.124 13 C -0.105 4.105 14 C -0.115 4.115 15 C 0.155 3.845 16 H 0.067 0.933 17 N -0.730 5.730 18 C -0.234 4.234 19 H 0.074 0.926 20 C -0.069 4.069 21 N -0.966 5.966 22 Si 0.963 3.037 23 H -0.290 1.290 24 H -0.299 1.299 25 H -0.271 1.271 26 C 0.098 3.902 27 O -0.388 6.388 28 C 0.061 3.939 29 C -0.145 4.145 30 H 0.117 0.883 31 H 0.102 0.898 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.100 0.900 36 H 0.119 0.881 37 H 0.060 0.940 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.054 0.946 45 H 0.054 0.946 46 H 0.062 0.938 47 H 0.374 0.626 48 H 0.250 0.750 49 H 0.047 0.953 50 H 0.084 0.916 51 H 0.040 0.960 52 H 0.054 0.946 53 H 0.047 0.953 54 H 0.089 0.911 55 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.068 -2.988 -17.618 21.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.169 4.169 4 C 0.089 3.911 5 H 0.083 0.917 6 C -0.174 4.174 7 C 0.308 3.692 8 O -0.446 6.446 9 N -0.328 5.328 10 C -0.007 4.007 11 C -0.165 4.165 12 C -0.161 4.161 13 C -0.143 4.143 14 C -0.154 4.154 15 C 0.047 3.953 16 H 0.084 0.916 17 N -0.369 5.369 18 C -0.366 4.366 19 H 0.092 0.908 20 C -0.262 4.262 21 N -0.616 5.616 22 Si 0.793 3.207 23 H -0.217 1.217 24 H -0.226 1.226 25 H -0.196 1.196 26 C -0.028 4.028 27 O -0.308 6.308 28 C -0.016 4.016 29 C -0.202 4.202 30 H 0.135 0.865 31 H 0.121 0.879 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.118 0.882 36 H 0.137 0.863 37 H 0.079 0.921 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.073 0.927 45 H 0.073 0.927 46 H 0.081 0.919 47 H 0.206 0.794 48 H 0.059 0.941 49 H 0.065 0.935 50 H 0.103 0.897 51 H 0.058 0.942 52 H 0.072 0.928 53 H 0.066 0.934 54 H 0.108 0.892 55 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.780 -3.409 -18.064 21.833 hybrid contribution 0.823 0.443 0.786 1.221 sum -10.957 -2.966 -17.278 20.673 Atomic orbital electron populations 1.23917 0.94642 1.03079 0.99481 1.22248 0.95901 0.96095 1.01735 1.20726 0.99869 0.93861 1.02427 1.20731 0.90365 0.94306 0.85722 0.91730 1.21860 1.01630 0.95048 0.98886 1.20692 0.78751 0.89420 0.80343 1.90610 1.63053 1.51367 1.39579 1.47814 1.44463 1.18870 1.21666 1.21412 0.94774 0.82852 1.01709 1.21857 0.99769 0.98051 0.96794 1.21804 0.99190 0.98840 0.96276 1.21587 0.98319 0.95469 0.98970 1.21926 0.95287 0.98871 0.99287 1.21091 0.93861 0.93612 0.86782 0.91555 1.42556 1.03961 1.54458 1.35955 1.19529 0.84663 1.21119 1.11264 0.90762 1.25423 1.01339 1.00460 0.98983 1.69796 1.35112 1.34233 1.22484 0.85297 0.81277 0.77883 0.76261 1.21724 1.22559 1.19564 1.22356 1.01260 0.92424 0.86798 1.87882 1.39324 1.83371 1.20190 1.22495 0.97004 0.96939 0.85116 1.21712 0.98654 1.02618 0.97192 0.86504 0.87938 0.92762 0.91011 0.90774 0.88204 0.86276 0.92129 0.89931 0.90086 0.91630 0.91886 0.91038 0.91486 0.92682 0.92740 0.91909 0.79361 0.94140 0.93459 0.89736 0.94168 0.92776 0.93374 0.89238 0.91934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.80 13.95 67.79 0.95 -1.86 16 2 C -0.16 -3.11 5.05 -16.48 -0.08 -3.20 16 3 C -0.11 -2.06 9.69 71.24 0.69 -1.37 16 4 C 0.15 3.48 1.78 29.85 0.05 3.54 16 5 H 0.06 1.60 7.17 -2.39 -0.02 1.58 16 6 C -0.13 -3.34 3.64 29.85 0.11 -3.23 16 7 C 0.52 15.37 6.06 87.66 0.53 15.90 16 8 O -0.57 -19.21 14.08 7.88 0.11 -19.10 16 9 N -0.60 -17.57 1.70 -824.97 -1.40 -18.96 16 10 C 0.11 3.26 5.15 85.90 0.44 3.70 16 11 C -0.13 -3.21 5.54 30.47 0.17 -3.04 16 12 C -0.12 -3.11 5.49 30.68 0.17 -2.94 16 13 C -0.11 -2.71 5.40 30.73 0.17 -2.54 16 14 C -0.12 -3.49 5.22 30.88 0.16 -3.33 16 15 C 0.16 5.50 2.29 45.10 0.10 5.61 16 16 H 0.07 2.41 3.28 -2.39 -0.01 2.41 16 17 N -0.73 -33.79 5.13 -322.42 -1.65 -35.45 16 18 C -0.23 -12.15 9.88 84.03 0.83 -11.32 16 19 H 0.07 3.73 7.83 -2.91 -0.02 3.71 16 20 C -0.07 -3.81 5.50 84.86 0.47 -3.34 16 21 N -0.97 -56.75 13.06 21.65 0.28 -56.47 16 22 Si 0.96 44.74 29.55 68.60 2.03 46.76 16 23 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 24 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 25 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 26 C 0.10 3.15 5.40 86.75 0.47 3.61 16 27 O -0.39 -10.40 9.14 -138.07 -1.26 -11.66 16 28 C 0.06 1.35 6.46 71.98 0.46 1.81 16 29 C -0.14 -2.74 10.28 71.98 0.74 -2.00 16 30 H 0.12 1.51 8.05 -2.91 -0.02 1.49 16 31 H 0.10 1.53 7.84 -2.91 -0.02 1.51 16 32 H 0.05 1.14 7.50 -2.38 -0.02 1.12 16 33 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.10 2.51 7.54 -2.39 -0.02 2.50 16 36 H 0.12 2.56 7.60 -2.39 -0.02 2.54 16 37 H 0.06 1.75 8.13 -2.39 -0.02 1.73 16 38 H 0.08 2.43 6.06 -2.39 -0.01 2.42 16 39 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 40 H 0.07 1.87 6.04 -2.39 -0.01 1.85 16 41 H 0.06 1.79 5.47 -2.38 -0.01 1.77 16 42 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.05 1.47 5.38 -2.39 -0.01 1.46 16 45 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 46 H 0.06 1.80 7.87 -2.39 -0.02 1.79 16 47 H 0.37 18.80 7.80 -92.71 -0.72 18.07 16 48 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 49 H 0.05 1.76 8.09 -2.39 -0.02 1.74 16 50 H 0.08 2.49 5.89 -2.39 -0.01 2.47 16 51 H 0.04 0.96 8.08 -2.39 -0.02 0.95 16 52 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 53 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 54 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 55 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 Total: -1.00 -62.80 416.11 4.68 -58.13 By element: Atomic # 1 Polarization: 40.59 SS G_CDS: 0.14 Total: 40.73 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: 6.43 Total: -3.98 kcal Atomic # 7 Polarization: -108.11 SS G_CDS: -2.77 Total: -110.88 kcal Atomic # 8 Polarization: -29.60 SS G_CDS: -1.15 Total: -30.75 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.76 kcal Total: -62.80 4.68 -58.13 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692322488.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.013 kcal (2) G-P(sol) polarization free energy of solvation -62.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds