Wall clock time and date at job start Tue Mar 31 2020 21:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50706 * 120.00302 * 2 1 4 4 C 1.50702 * 120.00204 * 179.97438 * 2 1 3 5 5 H 1.09003 * 109.46685 * 354.99989 * 4 2 1 6 6 C 1.52998 * 109.47203 * 114.99755 * 4 2 1 7 7 C 1.50702 * 109.47248 * 185.00254 * 6 4 2 8 8 O 1.21273 * 119.99892 * 0.02562 * 7 6 4 9 9 N 1.34772 * 119.99832 * 179.97438 * 7 6 4 10 10 C 1.45344 * 120.35607 * 359.72804 * 9 7 6 11 11 C 1.53044 * 108.62618 * 223.25152 * 10 9 7 12 12 C 1.52875 * 109.24471 * 77.97377 * 11 10 9 13 13 C 1.53969 * 109.71606 * 287.12295 * 12 11 10 14 14 C 1.52450 * 110.73429 * 315.64535 * 13 12 11 15 15 C 1.53794 * 109.42022 * 113.72492 * 14 13 12 16 16 H 1.09007 * 109.57135 * 42.07374 * 15 14 13 17 17 N 1.46500 * 109.52062 * 162.22079 * 15 14 13 18 18 C 1.36940 * 120.00020 * 204.68675 * 17 15 14 19 19 H 1.07998 * 120.00032 * 0.02562 * 18 17 15 20 20 C 1.38816 * 119.99522 * 180.02562 * 18 17 15 21 21 N 1.31615 * 120.00209 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99558 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47132 * 89.99835 * 22 20 18 24 24 H 1.48500 * 109.47340 * 209.99725 * 22 20 18 25 25 H 1.48507 * 109.47324 * 330.00003 * 22 20 18 26 26 C 1.46955 * 120.35408 * 179.97438 * 9 7 6 27 27 O 1.42899 * 109.47603 * 235.00363 * 4 2 1 28 28 C 1.42896 * 113.99967 * 89.99457 * 27 4 2 29 29 C 1.53003 * 109.46826 * 180.02562 * 28 27 4 30 30 H 1.08002 * 120.00352 * 180.02562 * 1 2 3 31 31 H 1.08005 * 119.99880 * 359.72812 * 1 2 3 32 32 H 1.09005 * 109.46474 * 359.97438 * 3 2 1 33 33 H 1.08992 * 109.47395 * 119.99834 * 3 2 1 34 34 H 1.09002 * 109.46494 * 239.99972 * 3 2 1 35 35 H 1.08996 * 109.47380 * 305.00672 * 6 4 2 36 36 H 1.09004 * 109.46602 * 65.00236 * 6 4 2 37 37 H 1.08998 * 109.67247 * 343.07690 * 10 9 7 38 38 H 1.09003 * 109.67417 * 103.60889 * 10 9 7 39 39 H 1.09008 * 109.55360 * 318.04951 * 11 10 9 40 40 H 1.08999 * 109.58955 * 197.92091 * 11 10 9 41 41 H 1.09009 * 109.42995 * 167.04943 * 12 11 10 42 42 H 1.08997 * 109.43299 * 47.19612 * 12 11 10 43 43 H 1.09003 * 109.22248 * 195.32890 * 13 12 11 44 44 H 1.08994 * 109.18983 * 75.94679 * 13 12 11 45 45 H 1.09005 * 109.47499 * 353.74301 * 14 13 12 46 46 H 1.08998 * 109.48323 * 233.71534 * 14 13 12 47 47 H 0.97000 * 119.99661 * 24.69848 * 17 15 14 48 48 H 0.97003 * 119.99476 * 179.97438 * 21 20 18 49 49 H 1.09000 * 109.53934 * 188.26452 * 26 9 7 50 50 H 1.08996 * 109.53674 * 308.50300 * 26 9 7 51 51 H 1.08999 * 109.47552 * 299.99994 * 28 27 4 52 52 H 1.09002 * 109.46971 * 60.00720 * 28 27 4 53 53 H 1.08997 * 109.47482 * 300.00055 * 29 28 27 54 54 H 1.09000 * 109.47153 * 60.00198 * 29 28 27 55 55 H 1.09001 * 109.46917 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 1 1.3585 -2.1316 0.0905 6 6 2.8464 -1.4426 -1.3067 7 6 3.5008 -2.7990 -1.3601 8 8 3.3550 -3.5791 -0.4431 9 7 4.2473 -3.1455 -2.4274 10 6 4.4215 -2.2192 -3.5338 11 6 4.2773 -2.9929 -4.8464 12 6 2.7948 -3.2413 -5.1247 13 6 2.2585 -4.3165 -4.1619 14 6 3.2357 -5.4818 -4.0559 15 6 3.8143 -5.5361 -2.6319 16 1 3.0199 -5.3545 -1.9079 17 7 4.4023 -6.8563 -2.3925 18 6 4.5185 -7.3324 -1.1138 19 1 4.1762 -6.7348 -0.2819 20 6 5.0762 -8.5832 -0.8870 21 7 5.4939 -9.3112 -1.9008 22 14 5.2340 -9.2330 0.8573 23 1 4.0076 -9.9894 1.2166 24 1 6.4133 -10.1312 0.9462 25 1 5.4066 -8.0951 1.7958 26 6 4.8894 -4.4659 -2.4874 27 8 2.9709 -1.3308 1.1042 28 6 2.4138 -1.8756 2.3021 29 6 3.4678 -1.8530 3.4109 30 1 -0.5401 -0.9353 0.0004 31 1 -0.5400 0.9354 0.0044 32 1 1.3551 2.1336 -0.0005 33 1 2.6902 1.3629 0.8899 34 1 2.6902 1.3627 -0.8900 35 1 2.1657 -1.3340 -2.1510 36 1 3.6116 -0.6678 -1.3550 37 1 3.6616 -1.4394 -3.4826 38 1 5.4132 -1.7697 -3.4834 39 1 4.7971 -3.9477 -4.7660 40 1 4.7081 -2.4123 -5.6621 41 1 2.6709 -3.5811 -6.1530 42 1 2.2386 -2.3151 -4.9801 43 1 1.3010 -4.6836 -4.5313 44 1 2.1174 -3.8755 -3.1752 45 1 4.0455 -5.3433 -4.7722 46 1 2.7143 -6.4142 -4.2722 47 1 4.7096 -7.3931 -3.1397 48 1 5.8839 -10.1851 -1.7421 49 1 5.5611 -4.5061 -3.3449 50 1 5.4550 -4.6381 -1.5717 51 1 1.5537 -1.2794 2.6067 52 1 2.0980 -2.9031 2.1213 53 1 4.3282 -2.4490 3.1066 54 1 3.7833 -0.8254 3.5915 55 1 3.0430 -2.2690 4.3245 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692322489.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:14 Heat of formation + Delta-G solvation = -72.891903 kcal Electronic energy + Delta-G solvation = -32182.672588 eV Core-core repulsion = 28219.694072 eV Total energy + Delta-G solvation = -3962.978516 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.58513 -39.76272 -38.42652 -36.67486 -36.08917 -35.04111 -33.94954 -32.64388 -31.30778 -31.19595 -28.73354 -28.17245 -27.37967 -25.88749 -24.79445 -23.71280 -23.58824 -22.27867 -20.91112 -19.81521 -19.60303 -19.10467 -18.04734 -17.81375 -17.21684 -17.12726 -16.61924 -16.30418 -15.98165 -15.56490 -15.41048 -15.24881 -15.08581 -14.91520 -14.54769 -14.25307 -14.16124 -14.08648 -13.81565 -13.56950 -13.41898 -13.17643 -13.12667 -13.05273 -12.82458 -12.78783 -12.68566 -12.47213 -12.42918 -12.24245 -12.05046 -12.00429 -11.95459 -11.79686 -11.72564 -11.42595 -11.38317 -11.26029 -11.01937 -10.57210 -10.46191 -10.07916 -9.55340 -8.92000 -7.98341 -5.25672 1.21371 1.39435 1.40820 1.50855 1.81294 2.14180 2.53063 2.78043 3.34216 3.51949 3.74726 3.90149 3.92738 3.97415 4.03043 4.10406 4.14782 4.18950 4.21478 4.29383 4.30922 4.40692 4.45181 4.46435 4.55462 4.56979 4.65338 4.74377 4.78907 4.79702 4.84298 4.86699 4.89817 4.96920 4.98059 4.98544 5.04316 5.07818 5.18608 5.19903 5.21191 5.29095 5.34220 5.46106 5.47356 5.51159 5.59848 5.64908 5.78604 5.83950 6.26092 6.33358 6.64655 7.31602 7.39849 8.05713 8.31671 9.24601 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.009260 B = 0.004251 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3023.131177 B = 6584.621174 C = 8871.942741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.153 4.153 3 C -0.110 4.110 4 C 0.138 3.862 5 H 0.047 0.953 6 C -0.123 4.123 7 C 0.501 3.499 8 O -0.577 6.577 9 N -0.601 5.601 10 C 0.100 3.900 11 C -0.149 4.149 12 C -0.106 4.106 13 C -0.112 4.112 14 C -0.119 4.119 15 C 0.167 3.833 16 H 0.026 0.974 17 N -0.731 5.731 18 C -0.231 4.231 19 H 0.055 0.945 20 C -0.069 4.069 21 N -0.965 5.965 22 Si 0.964 3.036 23 H -0.286 1.286 24 H -0.286 1.286 25 H -0.282 1.282 26 C 0.119 3.881 27 O -0.384 6.384 28 C 0.063 3.937 29 C -0.144 4.144 30 H 0.092 0.908 31 H 0.122 0.878 32 H 0.075 0.925 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.132 0.868 36 H 0.120 0.880 37 H 0.109 0.891 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.102 0.898 41 H 0.071 0.929 42 H 0.084 0.916 43 H 0.058 0.942 44 H 0.045 0.955 45 H 0.080 0.920 46 H 0.041 0.959 47 H 0.375 0.625 48 H 0.252 0.748 49 H 0.089 0.911 50 H 0.023 0.977 51 H 0.059 0.941 52 H 0.025 0.975 53 H 0.039 0.961 54 H 0.072 0.928 55 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.415 26.598 -4.419 28.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.154 4.154 3 C -0.166 4.166 4 C 0.080 3.920 5 H 0.065 0.935 6 C -0.163 4.163 7 C 0.290 3.710 8 O -0.456 6.456 9 N -0.334 5.334 10 C -0.021 4.021 11 C -0.187 4.187 12 C -0.143 4.143 13 C -0.150 4.150 14 C -0.157 4.157 15 C 0.058 3.942 16 H 0.044 0.956 17 N -0.371 5.371 18 C -0.364 4.364 19 H 0.073 0.927 20 C -0.261 4.261 21 N -0.616 5.616 22 Si 0.793 3.207 23 H -0.213 1.213 24 H -0.212 1.212 25 H -0.208 1.208 26 C -0.007 4.007 27 O -0.304 6.304 28 C -0.013 4.013 29 C -0.201 4.201 30 H 0.110 0.890 31 H 0.140 0.860 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.150 0.850 36 H 0.138 0.862 37 H 0.127 0.873 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.120 0.880 41 H 0.090 0.910 42 H 0.102 0.898 43 H 0.076 0.924 44 H 0.064 0.936 45 H 0.098 0.902 46 H 0.060 0.940 47 H 0.208 0.792 48 H 0.061 0.939 49 H 0.107 0.893 50 H 0.042 0.958 51 H 0.077 0.923 52 H 0.043 0.957 53 H 0.059 0.941 54 H 0.091 0.909 55 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.302 26.251 -3.767 27.789 hybrid contribution 0.192 -1.685 1.032 1.985 sum -8.110 24.566 -2.736 26.014 Atomic orbital electron populations 1.23968 0.94749 1.02860 0.99806 1.22200 0.95710 0.95981 1.01485 1.20772 1.00311 0.92941 1.02596 1.20809 0.90592 0.94272 0.86338 0.93465 1.21876 1.01755 0.94009 0.98612 1.21179 0.78854 0.89710 0.81213 1.90743 1.61970 1.54470 1.38411 1.47928 1.49961 1.15912 1.19610 1.21868 1.03278 0.92000 0.84983 1.22254 0.97635 1.01505 0.97280 1.21724 0.95478 0.98387 0.98736 1.21617 0.97767 0.95639 1.00002 1.21978 0.99601 0.98496 0.95661 1.20804 0.93567 0.84406 0.95431 0.95569 1.42515 1.73505 1.16276 1.04846 1.19412 1.31871 0.99075 0.85994 0.92723 1.25396 1.02367 0.97621 1.00717 1.69784 1.48725 1.12534 1.30523 0.85290 0.77180 0.77790 0.80453 1.21268 1.21172 1.20759 1.21952 0.96128 0.82334 1.00248 1.87853 1.39496 1.83168 1.19873 1.22420 0.97011 0.96426 0.85450 1.21701 0.98513 1.02855 0.97056 0.88995 0.85955 0.90641 0.92246 0.90472 0.84982 0.86221 0.87288 0.90697 0.91700 0.88011 0.90988 0.89779 0.92350 0.93608 0.90182 0.94011 0.79243 0.93890 0.89281 0.95826 0.92276 0.95675 0.94134 0.90911 0.89620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.69 13.92 67.79 0.94 -1.75 16 2 C -0.15 -2.70 5.05 -16.48 -0.08 -2.78 16 3 C -0.11 -1.50 9.78 71.24 0.70 -0.80 16 4 C 0.14 3.39 1.87 29.85 0.06 3.45 16 5 H 0.05 1.37 7.25 -2.39 -0.02 1.36 16 6 C -0.12 -2.65 3.59 29.85 0.11 -2.54 16 7 C 0.50 16.29 6.04 87.66 0.53 16.82 16 8 O -0.58 -25.75 14.16 10.77 0.15 -25.60 16 9 N -0.60 -17.49 1.69 -824.65 -1.39 -18.89 16 10 C 0.10 1.77 5.85 86.61 0.51 2.27 16 11 C -0.15 -2.49 5.45 30.57 0.17 -2.33 16 12 C -0.11 -1.77 5.75 30.88 0.18 -1.60 16 13 C -0.11 -2.90 5.40 30.74 0.17 -2.74 16 14 C -0.12 -4.05 4.97 30.68 0.15 -3.89 16 15 C 0.17 7.30 2.39 45.05 0.11 7.40 16 16 H 0.03 1.33 6.14 -2.38 -0.01 1.32 16 17 N -0.73 -39.83 5.13 -322.62 -1.65 -41.49 16 18 C -0.23 -14.22 9.90 84.03 0.83 -13.39 16 19 H 0.05 3.51 7.83 -2.91 -0.02 3.49 16 20 C -0.07 -4.22 5.50 84.86 0.47 -3.75 16 21 N -0.96 -61.24 13.06 21.65 0.28 -60.96 16 22 Si 0.96 50.11 29.55 68.60 2.03 52.14 16 23 H -0.29 -14.52 7.11 99.48 0.71 -13.81 16 24 H -0.29 -14.45 7.11 99.48 0.71 -13.75 16 25 H -0.28 -14.54 7.11 99.48 0.71 -13.83 16 26 C 0.12 4.58 4.76 86.09 0.41 4.99 16 27 O -0.38 -11.34 9.07 -135.20 -1.23 -12.57 16 28 C 0.06 1.76 6.46 71.98 0.46 2.22 16 29 C -0.14 -3.54 10.28 71.98 0.74 -2.80 16 30 H 0.09 1.50 7.84 -2.91 -0.02 1.48 16 31 H 0.12 1.33 7.83 -2.91 -0.02 1.31 16 32 H 0.07 0.77 7.78 -2.38 -0.02 0.75 16 33 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.08 0.86 7.65 -2.39 -0.02 0.84 16 35 H 0.13 1.98 7.50 -2.39 -0.02 1.97 16 36 H 0.12 2.08 7.62 -2.39 -0.02 2.06 16 37 H 0.11 1.25 5.74 -2.39 -0.01 1.24 16 38 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.06 1.45 3.35 -2.38 -0.01 1.44 16 40 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 42 H 0.08 1.02 7.85 -2.39 -0.02 1.00 16 43 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.05 1.34 5.38 -2.39 -0.01 1.32 16 45 H 0.08 2.43 5.47 -2.38 -0.01 2.42 16 46 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 47 H 0.38 21.20 7.80 -92.71 -0.72 20.48 16 48 H 0.25 15.43 8.31 -92.71 -0.77 14.66 16 49 H 0.09 3.05 6.07 -2.39 -0.01 3.04 16 50 H 0.02 1.13 8.06 -2.39 -0.02 1.11 16 51 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 52 H 0.02 0.82 8.09 -2.39 -0.02 0.80 16 53 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 54 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 55 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -79.69 415.91 4.77 -74.92 By element: Atomic # 1 Polarization: 33.51 SS G_CDS: 0.14 Total: 33.65 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: 6.44 Total: -1.21 kcal Atomic # 7 Polarization: -118.56 SS G_CDS: -2.77 Total: -121.33 kcal Atomic # 8 Polarization: -37.10 SS G_CDS: -1.07 Total: -38.17 kcal Atomic # 14 Polarization: 50.11 SS G_CDS: 2.03 Total: 52.14 kcal Total: -79.69 4.77 -74.92 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692322489.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.031 kcal (2) G-P(sol) polarization free energy of solvation -79.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds