Wall clock time and date at job start Tue Mar 31 2020 22:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 113.99701 * 2 1 4 4 H 1.08993 * 109.47134 * 29.99373 * 3 2 1 5 5 C 1.50706 * 109.46645 * 269.99316 * 3 2 1 6 6 O 1.21279 * 120.00190 * 355.00531 * 5 3 2 7 7 N 1.34775 * 119.99737 * 174.99782 * 5 3 2 8 8 C 1.46498 * 119.99984 * 175.11935 * 7 5 3 9 9 C 1.53007 * 110.43393 * 299.48823 * 8 7 5 10 10 N 1.46498 * 109.46989 * 305.56763 * 9 8 7 11 11 C 1.36938 * 119.99921 * 175.49198 * 10 9 8 12 12 H 1.07997 * 120.00269 * 0.02562 * 11 10 9 13 13 C 1.38817 * 119.99816 * 179.97438 * 11 10 9 14 14 N 1.31611 * 120.00268 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99707 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46954 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.46755 * 120.00248 * 15 13 11 18 18 H 1.48500 * 109.47224 * 240.00230 * 15 13 11 19 19 C 1.54893 * 110.48687 * 176.80329 * 8 7 5 20 20 C 1.54882 * 102.74933 * 279.26324 * 19 8 7 21 21 C 1.54273 * 104.19581 * 322.05796 * 20 19 8 22 22 C 1.53878 * 106.59858 * 23.61039 * 21 20 19 23 23 C 1.53000 * 109.47118 * 149.99857 * 3 2 1 24 24 C 1.53005 * 109.46779 * 59.99547 * 23 3 2 25 25 C 1.53000 * 109.46779 * 180.02562 * 24 23 3 26 26 C 1.53006 * 109.47322 * 59.99929 * 25 24 23 27 27 C 1.52999 * 109.46908 * 300.00155 * 26 25 24 28 28 C 1.52995 * 109.47054 * 299.99728 * 23 3 2 29 29 H 1.09000 * 109.47537 * 300.00510 * 1 2 3 30 30 H 1.09006 * 109.46868 * 60.00303 * 1 2 3 31 31 H 1.09002 * 109.46946 * 180.02562 * 1 2 3 32 32 H 0.97003 * 120.00264 * 355.12246 * 7 5 3 33 33 H 1.08998 * 109.47140 * 65.56878 * 9 8 7 34 34 H 1.09005 * 109.46882 * 185.56928 * 9 8 7 35 35 H 0.96999 * 120.00124 * 355.49533 * 10 9 8 36 36 H 0.96999 * 120.00368 * 179.97438 * 14 13 11 37 37 H 1.08999 * 110.75393 * 37.58123 * 19 8 7 38 38 H 1.09001 * 110.75428 * 160.94654 * 19 8 7 39 39 H 1.08995 * 110.48867 * 203.38079 * 20 19 8 40 40 H 1.08998 * 110.48702 * 80.73021 * 20 19 8 41 41 H 1.08993 * 110.03092 * 264.32324 * 21 20 19 42 42 H 1.09004 * 110.03169 * 142.89105 * 21 20 19 43 43 H 1.08996 * 110.02872 * 240.71825 * 22 21 20 44 44 H 1.08998 * 110.03187 * 119.28404 * 22 21 20 45 45 H 1.08991 * 109.47205 * 179.97438 * 23 3 2 46 46 H 1.09000 * 109.47078 * 299.99559 * 24 23 3 47 47 H 1.08995 * 109.47053 * 60.00271 * 24 23 3 48 48 H 1.09005 * 109.47431 * 300.00170 * 25 24 23 49 49 H 1.08998 * 109.47506 * 179.97438 * 25 24 23 50 50 H 1.08992 * 109.47601 * 179.97438 * 26 25 24 51 51 H 1.09005 * 109.46671 * 59.99776 * 26 25 24 52 52 H 1.08991 * 109.47278 * 299.99510 * 27 26 25 53 53 H 1.09003 * 109.47013 * 179.97438 * 27 26 25 54 54 H 1.09001 * 109.47280 * 300.00325 * 28 23 3 55 55 H 1.09005 * 109.47011 * 59.99732 * 28 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5137 5 6 2.2146 1.7643 -1.4209 6 8 1.9792 1.0105 -2.3413 7 7 2.6588 3.0123 -1.6687 8 6 2.9595 3.4236 -3.0423 9 6 4.0611 2.5422 -3.6347 10 7 5.2299 2.5619 -2.7518 11 6 6.3117 1.7698 -3.0302 12 1 6.3034 1.1308 -3.9008 13 6 7.4195 1.7888 -2.1938 14 7 7.4299 2.5678 -1.1330 15 14 8.8948 0.7077 -2.5732 16 1 8.6343 -0.0683 -3.8122 17 1 10.0959 1.5594 -2.7664 18 1 9.1274 -0.2270 -1.4429 19 6 3.3742 4.9154 -3.0830 20 6 2.0113 5.6501 -3.0461 21 6 1.0863 4.7757 -3.9178 22 6 1.6893 3.3599 -3.9153 23 6 3.3588 1.2634 0.7213 24 6 4.2926 0.2893 0.0000 25 6 5.6411 0.2467 0.7217 26 6 5.4332 -0.2195 2.1641 27 6 4.4993 0.7546 2.8852 28 6 3.1514 0.7976 2.1638 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 2.7795 3.6384 -0.9376 33 1 3.6958 1.5198 -3.7313 34 1 4.3414 2.9223 -4.6172 35 1 5.2376 3.1360 -1.9699 36 1 8.2038 2.5809 -0.5484 37 1 3.9757 5.1731 -2.2114 38 1 3.9105 5.1422 -4.0045 39 1 2.1046 6.6490 -3.4722 40 1 1.6343 5.7037 -2.0248 41 1 1.0534 5.1657 -4.9350 42 1 0.0828 4.7548 -3.4927 43 1 1.9490 3.0631 -4.9314 44 1 0.9784 2.6521 -3.4891 45 1 3.8023 2.2590 0.7209 46 1 3.8493 -0.7065 0.0002 47 1 4.4404 0.6212 -1.0276 48 1 6.0847 1.2424 0.7221 49 1 6.3062 -0.4476 0.2083 50 1 6.3938 -0.2503 2.6781 51 1 4.9896 -1.2152 2.1637 52 1 4.9428 1.7502 2.8856 53 1 4.3508 0.4223 3.9127 54 1 2.4860 1.4914 2.6775 55 1 2.7080 -0.1982 2.1638 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698637779.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:56 Heat of formation + Delta-G solvation = -115.989536 kcal Electronic energy + Delta-G solvation = -33492.695854 eV Core-core repulsion = 29527.848485 eV Total energy + Delta-G solvation = -3964.847369 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.66176 -39.97420 -38.53307 -37.65818 -36.10995 -34.48081 -33.13537 -32.52545 -31.46443 -29.84072 -29.56096 -28.07105 -26.80911 -26.09298 -23.94853 -23.51960 -22.91393 -21.61124 -21.26170 -20.56469 -20.16804 -19.03542 -18.32102 -17.56167 -17.07670 -16.86236 -16.42991 -16.10290 -15.76792 -15.62519 -15.41383 -15.23035 -15.03191 -14.86153 -14.80149 -14.38251 -14.33631 -14.04484 -13.86095 -13.68795 -13.15513 -13.05681 -12.92796 -12.78165 -12.73619 -12.47912 -12.36752 -12.20634 -12.12572 -12.08042 -11.89781 -11.87762 -11.84673 -11.70078 -11.63219 -11.37260 -11.25580 -11.22953 -10.96990 -10.85399 -10.77334 -10.01237 -9.81416 -8.80745 -7.83510 -5.06477 1.41656 1.45529 1.51150 1.75379 2.27606 2.59034 2.90802 3.47102 3.55331 3.72179 3.75348 3.75906 3.89401 3.98170 4.04583 4.17594 4.24090 4.38054 4.44071 4.47365 4.51280 4.57563 4.59501 4.60211 4.65550 4.72531 4.72991 4.77304 4.79649 4.85210 4.86564 4.89425 4.93931 4.96106 5.08277 5.10889 5.14400 5.20172 5.27627 5.32286 5.34134 5.37137 5.38812 5.46805 5.52618 5.53321 5.57307 5.69005 5.78833 5.82074 6.15239 6.37240 6.76231 7.46516 7.47867 8.18248 8.51810 9.36972 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.007770 B = 0.006645 C = 0.004166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3602.915743 B = 4212.625157 C = 6719.639157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.376 6.376 3 C 0.084 3.916 4 H 0.115 0.885 5 C 0.498 3.502 6 O -0.566 6.566 7 N -0.697 5.697 8 C 0.173 3.827 9 C 0.151 3.849 10 N -0.715 5.715 11 C -0.238 4.238 12 H 0.047 0.953 13 C -0.038 4.038 14 N -0.933 5.933 15 Si 0.937 3.063 16 H -0.285 1.285 17 H -0.291 1.291 18 H -0.296 1.296 19 C -0.114 4.114 20 C -0.112 4.112 21 C -0.114 4.114 22 C -0.120 4.120 23 C -0.064 4.064 24 C -0.093 4.093 25 C -0.105 4.105 26 C -0.115 4.115 27 C -0.110 4.110 28 C -0.100 4.100 29 H 0.069 0.931 30 H 0.030 0.970 31 H 0.094 0.906 32 H 0.406 0.594 33 H 0.005 0.995 34 H 0.012 0.988 35 H 0.380 0.620 36 H 0.248 0.752 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.057 0.943 44 H 0.058 0.942 45 H 0.083 0.917 46 H 0.039 0.961 47 H 0.042 0.958 48 H 0.061 0.939 49 H 0.017 0.983 50 H 0.056 0.944 51 H 0.057 0.943 52 H 0.059 0.941 53 H 0.082 0.918 54 H 0.087 0.913 55 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.253 5.240 7.798 18.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.293 6.293 3 C 0.023 3.977 4 H 0.133 0.867 5 C 0.285 3.715 6 O -0.445 6.445 7 N -0.350 5.350 8 C 0.087 3.913 9 C 0.022 3.978 10 N -0.359 5.359 11 C -0.370 4.370 12 H 0.065 0.935 13 C -0.232 4.232 14 N -0.583 5.583 15 Si 0.769 3.231 16 H -0.211 1.211 17 H -0.219 1.219 18 H -0.223 1.223 19 C -0.152 4.152 20 C -0.150 4.150 21 C -0.151 4.151 22 C -0.159 4.159 23 C -0.083 4.083 24 C -0.131 4.131 25 C -0.143 4.143 26 C -0.152 4.152 27 C -0.148 4.148 28 C -0.137 4.137 29 H 0.087 0.913 30 H 0.049 0.951 31 H 0.113 0.887 32 H 0.242 0.758 33 H 0.023 0.977 34 H 0.030 0.970 35 H 0.214 0.786 36 H 0.057 0.943 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.096 0.904 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.102 0.898 46 H 0.058 0.942 47 H 0.060 0.940 48 H 0.080 0.920 49 H 0.036 0.964 50 H 0.075 0.925 51 H 0.076 0.924 52 H 0.078 0.922 53 H 0.100 0.900 54 H 0.105 0.895 55 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -16.217 4.387 7.035 18.214 hybrid contribution 1.473 -0.586 -0.418 1.640 sum -14.744 3.801 6.617 16.602 Atomic orbital electron populations 1.22983 0.79796 1.03796 1.00438 1.88001 1.21162 1.25808 1.94329 1.22205 0.97442 0.86830 0.91214 0.86741 1.21597 0.75970 0.81426 0.92528 1.90634 1.51838 1.54643 1.47351 1.45762 1.66762 1.13505 1.08928 1.21233 0.93438 0.94605 0.82034 1.21005 0.87221 0.96744 0.92787 1.42057 1.13704 1.50515 1.29586 1.19249 0.94563 1.16705 1.06525 0.93514 1.24917 0.99380 1.01097 0.97835 1.69693 1.30116 1.42462 1.16012 0.85636 0.81685 0.78992 0.76822 1.21089 1.21869 1.22322 1.22662 0.98372 0.91396 1.02810 1.22353 0.93115 0.98758 1.00738 1.22098 0.99081 0.93123 1.00847 1.22370 0.96056 0.98542 0.98949 1.21153 0.91245 1.00082 0.95771 1.21228 0.94789 0.98258 0.98840 1.21317 0.96360 1.01013 0.95571 1.21537 0.99623 0.99306 0.94768 1.21464 0.94994 0.99240 0.99075 1.21469 0.97496 1.02245 0.92538 0.91289 0.95097 0.88727 0.75796 0.97724 0.97009 0.78628 0.94287 0.91101 0.90829 0.89832 0.90436 0.90924 0.90986 0.92403 0.92347 0.89841 0.94229 0.93960 0.92046 0.96436 0.92535 0.92439 0.92226 0.89988 0.89462 0.91671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 10.81 113.37 1.23 1.79 16 2 O -0.38 -11.38 8.54 -129.99 -1.11 -12.49 16 3 C 0.08 2.36 2.26 29.85 0.07 2.43 16 4 H 0.12 2.25 7.79 -2.39 -0.02 2.23 16 5 C 0.50 17.10 5.12 87.66 0.45 17.55 16 6 O -0.57 -24.41 13.39 15.96 0.21 -24.19 16 7 N -0.70 -21.07 4.60 -418.06 -1.92 -22.99 16 8 C 0.17 5.63 0.39 4.68 0.00 5.63 16 9 C 0.15 6.60 4.82 86.38 0.42 7.02 16 10 N -0.72 -35.46 5.15 -343.44 -1.77 -37.23 16 11 C -0.24 -13.49 9.99 84.03 0.84 -12.65 16 12 H 0.05 2.76 7.83 -2.91 -0.02 2.74 16 13 C -0.04 -2.10 5.50 84.86 0.47 -1.64 16 14 N -0.93 -52.34 12.62 21.65 0.27 -52.06 16 15 Si 0.94 47.10 29.55 68.60 2.03 49.13 16 16 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 17 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 18 H -0.30 -14.96 7.11 99.48 0.71 -14.25 16 19 C -0.11 -3.09 5.57 31.88 0.18 -2.92 16 20 C -0.11 -2.17 6.79 31.67 0.22 -1.95 16 21 C -0.11 -2.37 6.80 31.32 0.21 -2.16 16 22 C -0.12 -3.52 5.65 31.32 0.18 -3.34 16 23 C -0.06 -1.90 2.04 -10.79 -0.02 -1.92 16 24 C -0.09 -3.74 4.81 30.60 0.15 -3.59 16 25 C -0.10 -4.25 5.92 30.60 0.18 -4.07 16 26 C -0.11 -3.54 5.92 30.60 0.18 -3.36 16 27 C -0.11 -2.70 5.92 30.58 0.18 -2.52 16 28 C -0.10 -2.35 5.05 30.58 0.15 -2.19 16 29 H 0.07 1.06 8.08 -2.39 -0.02 1.04 16 30 H 0.03 0.73 8.14 -2.38 -0.02 0.71 16 31 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.41 10.08 8.44 -92.71 -0.78 9.29 16 33 H 0.00 0.24 6.62 -2.39 -0.02 0.23 16 34 H 0.01 0.54 8.07 -2.38 -0.02 0.52 16 35 H 0.38 18.94 7.27 -92.71 -0.67 18.26 16 36 H 0.25 13.73 8.31 -92.71 -0.77 12.96 16 37 H 0.07 1.99 8.07 -2.39 -0.02 1.97 16 38 H 0.07 2.13 8.00 -2.39 -0.02 2.11 16 39 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 43 H 0.06 1.79 7.84 -2.39 -0.02 1.77 16 44 H 0.06 1.91 6.34 -2.39 -0.02 1.89 16 45 H 0.08 2.54 8.09 -2.39 -0.02 2.52 16 46 H 0.04 1.64 7.68 -2.39 -0.02 1.62 16 47 H 0.04 2.08 7.06 -2.39 -0.02 2.06 16 48 H 0.06 2.79 7.70 -2.38 -0.02 2.77 16 49 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 50 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 51 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 52 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 53 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 54 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 55 H 0.06 1.61 7.68 -2.38 -0.02 1.59 16 Total: -1.00 -69.50 417.13 2.19 -67.32 By element: Atomic # 1 Polarization: 41.01 SS G_CDS: -0.60 Total: 40.41 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: 5.07 Total: -7.90 kcal Atomic # 7 Polarization: -108.86 SS G_CDS: -3.42 Total: -112.28 kcal Atomic # 8 Polarization: -35.78 SS G_CDS: -0.90 Total: -36.68 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.13 kcal Total: -69.50 2.19 -67.32 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698637779.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.672 kcal (2) G-P(sol) polarization free energy of solvation -69.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds