Wall clock time and date at job start Tue Mar 31 2020 23:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42906 * 113.99774 * 2 1 4 4 H 1.08995 * 109.47256 * 4.74786 * 3 2 1 5 5 C 1.50702 * 109.47082 * 124.75115 * 3 2 1 6 6 O 1.21279 * 120.00019 * 4.59713 * 5 3 2 7 7 N 1.34774 * 119.99743 * 184.60025 * 5 3 2 8 8 C 1.46498 * 119.99856 * 175.07388 * 7 5 3 9 9 C 1.52995 * 110.02029 * 65.33357 * 8 7 5 10 10 N 1.46495 * 109.47049 * 56.96306 * 9 8 7 11 11 C 1.36944 * 120.00353 * 174.88801 * 10 9 8 12 12 H 1.08004 * 119.99513 * 0.02562 * 11 10 9 13 13 C 1.38804 * 120.00478 * 180.02562 * 11 10 9 14 14 N 1.31623 * 120.00034 * 359.72192 * 13 11 10 15 15 Si 1.86799 * 120.00148 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47155 * 89.99719 * 15 13 11 17 17 H 1.48503 * 109.46858 * 209.99667 * 15 13 11 18 18 H 1.48502 * 109.47039 * 329.99567 * 15 13 11 19 19 C 1.54271 * 110.07331 * 186.75402 * 8 7 5 20 20 C 1.54888 * 104.19980 * 95.69396 * 19 8 7 21 21 C 1.54893 * 102.74638 * 37.94429 * 20 19 8 22 22 C 1.53880 * 110.03184 * 303.94144 * 8 7 5 23 23 C 1.52997 * 109.46907 * 244.74798 * 3 2 1 24 24 C 1.53009 * 109.47155 * 64.84849 * 23 3 2 25 25 C 1.53002 * 109.46860 * 180.02562 * 24 23 3 26 26 C 1.52996 * 109.47161 * 60.00179 * 25 24 23 27 27 C 1.53002 * 109.47114 * 299.99409 * 26 25 24 28 28 C 1.52997 * 109.46919 * 60.00378 * 27 26 25 29 29 H 1.08997 * 109.47041 * 181.60714 * 1 2 3 30 30 H 1.08995 * 109.47201 * 301.61473 * 1 2 3 31 31 H 1.08998 * 109.46600 * 61.61430 * 1 2 3 32 32 H 0.97000 * 120.00027 * 355.07189 * 7 5 3 33 33 H 1.09008 * 109.46667 * 296.96816 * 9 8 7 34 34 H 1.09002 * 109.47573 * 176.96972 * 9 8 7 35 35 H 0.97001 * 120.00585 * 354.89655 * 10 9 8 36 36 H 0.97000 * 120.00677 * 179.97438 * 14 13 11 37 37 H 1.09001 * 110.48458 * 214.37832 * 19 8 7 38 38 H 1.09000 * 110.48109 * 337.01668 * 19 8 7 39 39 H 1.08998 * 110.75745 * 279.63012 * 20 19 8 40 40 H 1.09001 * 110.75367 * 156.25613 * 20 19 8 41 41 H 1.08999 * 110.48200 * 203.37997 * 21 20 19 42 42 H 1.08990 * 110.48864 * 80.73466 * 21 20 19 43 43 H 1.09001 * 110.03034 * 359.94914 * 22 8 7 44 44 H 1.08993 * 110.03289 * 121.38548 * 22 8 7 45 45 H 1.09000 * 109.47274 * 184.84623 * 23 3 2 46 46 H 1.09000 * 109.46845 * 300.00036 * 24 23 3 47 47 H 1.08995 * 109.46953 * 59.99500 * 24 23 3 48 48 H 1.09000 * 109.47327 * 299.99625 * 25 24 23 49 49 H 1.09004 * 109.46590 * 179.97438 * 25 24 23 50 50 H 1.09004 * 109.47159 * 179.97438 * 26 25 24 51 51 H 1.08997 * 109.47408 * 60.00055 * 26 25 24 52 52 H 1.09000 * 109.47054 * 300.00358 * 27 26 25 53 53 H 1.09002 * 109.47017 * 180.02562 * 27 26 25 54 54 H 1.09000 * 109.46913 * 179.97438 * 28 27 26 55 55 H 1.09000 * 109.47274 * 60.00114 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.2225 2.0540 0.0851 5 6 2.9544 1.4351 1.1674 6 8 3.1778 0.4764 1.8759 7 7 3.5505 2.6163 1.4241 8 6 4.3828 2.7722 2.6196 9 6 5.6190 1.8765 2.5176 10 7 6.3599 2.2039 1.2969 11 6 7.5636 1.6019 1.0442 12 1 7.9666 0.8854 1.7447 13 6 8.2659 1.9125 -0.1121 14 7 7.7722 2.7816 -0.9684 15 14 9.9075 1.0907 -0.4570 16 1 9.6832 -0.1597 -1.2262 17 1 10.7652 2.0105 -1.2467 18 1 10.5791 0.7680 0.8275 19 6 4.8098 4.2461 2.7789 20 6 3.7673 4.8398 3.7586 21 6 3.5353 3.6779 4.7563 22 6 3.5724 2.4110 3.8768 23 6 2.7798 1.5211 -1.3046 24 6 1.8020 1.5098 -2.4814 25 6 2.5717 1.7247 -3.7862 26 6 3.5969 0.6031 -3.9642 27 6 4.5748 0.6145 -2.7875 28 6 3.8051 0.3995 -1.4827 29 1 -0.3633 -1.0272 0.0288 30 1 -0.3633 0.5387 0.8751 31 1 -0.3632 0.4886 -0.9041 32 1 3.4284 3.3631 0.8173 33 1 5.3091 0.8319 2.4854 34 1 6.2583 2.0392 3.3854 35 1 5.9979 2.8473 0.6676 36 1 8.2631 2.9990 -1.7763 37 1 5.8117 4.3092 3.2036 38 1 4.7680 4.7611 1.8192 39 1 2.8443 5.0899 3.2355 40 1 4.1716 5.7133 4.2701 41 1 2.5635 3.7785 5.2396 42 1 4.3313 3.6493 5.5002 43 1 2.5596 2.1205 3.5975 44 1 4.0599 1.5976 4.4143 45 1 3.2940 2.4816 -1.2688 46 1 1.2878 0.5493 -2.5173 47 1 1.0713 2.3084 -2.3543 48 1 3.0862 2.6850 -3.7505 49 1 1.8751 1.7162 -4.6245 50 1 4.1450 0.7560 -4.8939 51 1 3.0825 -0.3571 -3.9999 52 1 5.0892 1.5748 -2.7518 53 1 5.3055 -0.1843 -2.9145 54 1 4.5018 0.4072 -0.6445 55 1 3.2907 -0.5608 -1.5184 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698637781.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:01 Heat of formation + Delta-G solvation = -117.609446 kcal Electronic energy + Delta-G solvation = -32998.715822 eV Core-core repulsion = 29033.798209 eV Total energy + Delta-G solvation = -3964.917614 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.67839 -40.10831 -38.54070 -37.74636 -36.13527 -34.58679 -33.19400 -32.51284 -31.60074 -29.85359 -29.57834 -28.25597 -26.71962 -26.08361 -24.00818 -23.56618 -22.98697 -21.78316 -21.34912 -20.65819 -20.17171 -19.09650 -18.26129 -17.62566 -17.18224 -16.90145 -16.47203 -16.13026 -15.73114 -15.69887 -15.44712 -15.24633 -15.04341 -14.99836 -14.86785 -14.51057 -14.40108 -14.05897 -13.94113 -13.53581 -13.21169 -13.12429 -13.01191 -12.84757 -12.80611 -12.58156 -12.36912 -12.22836 -12.16867 -12.00769 -11.96308 -11.89095 -11.87017 -11.74715 -11.69046 -11.41369 -11.39283 -11.21626 -11.15158 -10.91890 -10.79294 -10.08166 -9.88571 -8.89882 -7.91371 -5.16209 1.41961 1.44007 1.51083 1.72909 2.11895 2.55234 3.01869 3.40112 3.52492 3.66648 3.67328 3.74245 3.82341 3.92125 4.02190 4.07853 4.20462 4.33748 4.39867 4.41653 4.43833 4.54161 4.56719 4.58464 4.60820 4.63805 4.67278 4.69536 4.70705 4.80937 4.82610 4.87806 4.90060 4.93566 5.02004 5.10016 5.12298 5.20248 5.21550 5.26638 5.27080 5.31586 5.34872 5.36819 5.41621 5.48741 5.50018 5.50820 5.63740 5.78116 6.16760 6.30238 6.71969 7.38725 7.43090 8.12188 8.43340 9.30376 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.007207 B = 0.006252 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3884.425327 B = 4477.206492 C = 7308.139144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.381 6.381 3 C 0.085 3.915 4 H 0.121 0.879 5 C 0.504 3.496 6 O -0.563 6.563 7 N -0.702 5.702 8 C 0.174 3.826 9 C 0.149 3.851 10 N -0.722 5.722 11 C -0.244 4.244 12 H 0.056 0.944 13 C -0.057 4.057 14 N -0.950 5.950 15 Si 0.956 3.044 16 H -0.295 1.295 17 H -0.288 1.288 18 H -0.277 1.277 19 C -0.114 4.114 20 C -0.111 4.111 21 C -0.117 4.117 22 C -0.111 4.111 23 C -0.082 4.082 24 C -0.103 4.103 25 C -0.114 4.114 26 C -0.112 4.112 27 C -0.112 4.112 28 C -0.092 4.092 29 H 0.093 0.907 30 H 0.047 0.953 31 H 0.067 0.933 32 H 0.406 0.594 33 H 0.002 0.998 34 H 0.018 0.982 35 H 0.379 0.621 36 H 0.250 0.750 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.068 0.932 43 H 0.061 0.939 44 H 0.049 0.951 45 H 0.078 0.922 46 H 0.069 0.931 47 H 0.089 0.911 48 H 0.058 0.942 49 H 0.085 0.915 50 H 0.062 0.938 51 H 0.064 0.936 52 H 0.044 0.956 53 H 0.033 0.967 54 H 0.016 0.984 55 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.648 4.958 0.152 20.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.299 6.299 3 C 0.024 3.976 4 H 0.139 0.861 5 C 0.291 3.709 6 O -0.441 6.441 7 N -0.355 5.355 8 C 0.088 3.912 9 C 0.021 3.979 10 N -0.365 5.365 11 C -0.377 4.377 12 H 0.074 0.926 13 C -0.250 4.250 14 N -0.600 5.600 15 Si 0.786 3.214 16 H -0.223 1.223 17 H -0.215 1.215 18 H -0.202 1.202 19 C -0.152 4.152 20 C -0.148 4.148 21 C -0.155 4.155 22 C -0.150 4.150 23 C -0.101 4.101 24 C -0.140 4.140 25 C -0.151 4.151 26 C -0.149 4.149 27 C -0.150 4.150 28 C -0.129 4.129 29 H 0.111 0.889 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.242 0.758 33 H 0.019 0.981 34 H 0.036 0.964 35 H 0.212 0.788 36 H 0.059 0.941 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.100 0.900 40 H 0.103 0.897 41 H 0.102 0.898 42 H 0.087 0.913 43 H 0.080 0.920 44 H 0.068 0.932 45 H 0.096 0.904 46 H 0.088 0.912 47 H 0.108 0.892 48 H 0.077 0.923 49 H 0.104 0.896 50 H 0.081 0.919 51 H 0.083 0.917 52 H 0.063 0.937 53 H 0.052 0.948 54 H 0.035 0.965 55 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -19.257 3.979 0.716 19.677 hybrid contribution 1.541 -0.395 -0.592 1.697 sum -17.716 3.584 0.124 18.076 Atomic orbital electron populations 1.23140 0.79234 1.03946 1.01224 1.88036 1.21497 1.25784 1.94573 1.22108 0.95658 0.87655 0.92170 0.86142 1.21255 0.81405 0.82436 0.85853 1.90653 1.63448 1.38706 1.51326 1.45979 1.49543 1.13623 1.26375 1.21134 0.88817 0.96006 0.85242 1.21144 0.91491 0.96275 0.88982 1.42146 1.21053 1.50936 1.22355 1.19420 0.96876 1.17899 1.03459 0.92633 1.25225 1.01663 1.00830 0.97302 1.69746 1.39910 1.37950 1.12369 0.85406 0.80904 0.77491 0.77569 1.22312 1.21453 1.20211 1.22522 0.99862 0.91935 1.00873 1.22490 0.98524 0.97675 0.96137 1.22375 1.02586 0.93086 0.97404 1.22315 0.99236 0.98676 0.94738 1.21422 0.96141 0.98809 0.93684 1.21550 0.96886 1.03037 0.92531 1.21503 0.97675 0.98044 0.97869 1.21502 0.96904 0.99818 0.96672 1.21394 0.97631 1.00378 0.95583 1.21186 0.96631 0.98770 0.96357 0.88883 0.93449 0.91445 0.75803 0.98052 0.96427 0.78839 0.94142 0.91575 0.90917 0.90032 0.89744 0.89778 0.91343 0.92025 0.93177 0.90361 0.91233 0.89250 0.92325 0.89633 0.91891 0.91726 0.93730 0.94804 0.96481 0.92551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 10.63 113.37 1.20 1.58 16 2 O -0.38 -11.11 8.53 -129.98 -1.11 -12.22 16 3 C 0.09 2.31 2.34 29.85 0.07 2.38 16 4 H 0.12 2.24 7.61 -2.39 -0.02 2.22 16 5 C 0.50 17.70 5.20 87.66 0.46 18.15 16 6 O -0.56 -25.14 13.75 15.97 0.22 -24.92 16 7 N -0.70 -22.13 4.51 -419.64 -1.89 -24.03 16 8 C 0.17 5.89 0.57 4.33 0.00 5.89 16 9 C 0.15 6.80 4.65 86.38 0.40 7.20 16 10 N -0.72 -37.75 5.26 -343.46 -1.81 -39.56 16 11 C -0.24 -14.38 9.99 84.03 0.84 -13.54 16 12 H 0.06 3.31 7.83 -2.91 -0.02 3.29 16 13 C -0.06 -3.31 5.50 84.86 0.47 -2.84 16 14 N -0.95 -56.65 13.06 21.65 0.28 -56.37 16 15 Si 0.96 47.98 29.55 68.60 2.03 50.00 16 16 H -0.30 -14.93 7.11 99.48 0.71 -14.22 16 17 H -0.29 -14.18 7.11 99.48 0.71 -13.48 16 18 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 19 C -0.11 -3.26 5.65 31.67 0.18 -3.09 16 20 C -0.11 -2.25 6.91 31.89 0.22 -2.03 16 21 C -0.12 -2.56 6.83 31.67 0.22 -2.34 16 22 C -0.11 -3.33 5.22 31.32 0.16 -3.16 16 23 C -0.08 -2.26 2.00 -10.79 -0.02 -2.29 16 24 C -0.10 -2.06 4.97 30.60 0.15 -1.90 16 25 C -0.11 -2.38 5.92 30.59 0.18 -2.19 16 26 C -0.11 -2.93 5.92 30.59 0.18 -2.75 16 27 C -0.11 -4.06 5.92 30.59 0.18 -3.88 16 28 C -0.09 -3.42 4.82 30.59 0.15 -3.27 16 29 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.07 0.89 7.68 -2.39 -0.02 0.87 16 32 H 0.41 10.72 7.75 -92.71 -0.72 10.00 16 33 H 0.00 0.08 6.52 -2.38 -0.02 0.07 16 34 H 0.02 0.82 8.08 -2.39 -0.02 0.80 16 35 H 0.38 19.99 7.20 -92.71 -0.67 19.32 16 36 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 37 H 0.07 2.16 7.81 -2.39 -0.02 2.14 16 38 H 0.07 2.05 7.70 -2.39 -0.02 2.03 16 39 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.06 1.89 6.98 -2.39 -0.02 1.87 16 44 H 0.05 1.70 7.67 -2.39 -0.02 1.68 16 45 H 0.08 2.26 7.62 -2.39 -0.02 2.25 16 46 H 0.07 1.39 7.41 -2.39 -0.02 1.37 16 47 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 48 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 49 H 0.09 1.36 8.14 -2.39 -0.02 1.35 16 50 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 51 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 52 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 53 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 54 H 0.02 0.80 7.37 -2.39 -0.02 0.78 16 55 H 0.06 2.11 7.56 -2.39 -0.02 2.09 16 Total: -1.00 -75.14 415.97 2.24 -72.91 By element: Atomic # 1 Polarization: 42.80 SS G_CDS: -0.53 Total: 42.27 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: 5.04 Total: -8.08 kcal Atomic # 7 Polarization: -116.54 SS G_CDS: -3.42 Total: -119.96 kcal Atomic # 8 Polarization: -36.25 SS G_CDS: -0.89 Total: -37.14 kcal Atomic # 14 Polarization: 47.98 SS G_CDS: 2.03 Total: 50.00 kcal Total: -75.14 2.24 -72.91 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698637781.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.704 kcal (2) G-P(sol) polarization free energy of solvation -75.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds