Wall clock time and date at job start Tue Mar 31 2020 22:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 114.00136 * 2 1 4 4 C 1.52995 * 109.47207 * 210.00199 * 3 2 1 5 5 C 1.52998 * 109.47163 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47050 * 60.00073 * 5 4 3 7 7 C 1.50702 * 109.47194 * 59.99924 * 6 5 4 8 8 O 1.21280 * 120.00002 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99753 * 180.02562 * 7 6 5 10 10 C 1.46504 * 119.99808 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47248 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47319 * 180.02562 * 11 10 9 13 13 C 1.53081 * 109.43862 * 64.79595 * 12 11 10 14 14 C 1.53190 * 109.29209 * 181.23705 * 13 12 11 15 15 N 1.46921 * 108.89311 * 305.57883 * 14 13 12 16 16 C 1.36940 * 120.63187 * 233.51481 * 15 14 13 17 17 H 1.08001 * 120.00319 * 152.61971 * 16 15 14 18 18 C 1.38813 * 119.99903 * 332.62203 * 16 15 14 19 19 N 1.31624 * 120.00070 * 159.34992 * 18 16 15 20 20 Si 1.86800 * 120.00077 * 339.35529 * 18 16 15 21 21 H 1.48494 * 109.47321 * 92.87851 * 20 18 16 22 22 H 1.48501 * 109.47194 * 212.88430 * 20 18 16 23 23 H 1.48509 * 109.46983 * 332.87654 * 20 18 16 24 24 C 1.46923 * 118.74178 * 53.54201 * 15 14 13 25 25 C 1.53035 * 109.46026 * 185.00039 * 12 11 10 26 26 C 1.53004 * 109.47118 * 300.00076 * 6 5 4 27 27 C 1.52998 * 109.47222 * 60.00029 * 26 6 5 28 28 H 1.09001 * 109.47108 * 299.99980 * 1 2 3 29 29 H 1.08998 * 109.47391 * 60.00021 * 1 2 3 30 30 H 1.09001 * 109.47039 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46941 * 330.00228 * 3 2 1 32 32 H 1.09007 * 109.47204 * 59.99901 * 4 3 2 33 33 H 1.09001 * 109.47194 * 299.99875 * 4 3 2 34 34 H 1.09001 * 109.47055 * 300.00072 * 5 4 3 35 35 H 1.09005 * 109.47026 * 180.02562 * 5 4 3 36 36 H 1.09000 * 109.47243 * 179.97438 * 6 5 4 37 37 H 0.96998 * 120.00072 * 359.97438 * 9 7 6 38 38 H 1.09005 * 109.46954 * 59.99768 * 10 9 7 39 39 H 1.09000 * 109.47118 * 300.00079 * 10 9 7 40 40 H 1.08997 * 109.46660 * 59.99787 * 11 10 9 41 41 H 1.08997 * 109.46830 * 300.00452 * 11 10 9 42 42 H 1.08998 * 109.45993 * 304.97572 * 12 11 10 43 43 H 1.08992 * 109.38800 * 61.36124 * 13 12 11 44 44 H 1.09002 * 109.61927 * 301.25402 * 13 12 11 45 45 H 1.08999 * 109.58729 * 185.71870 * 14 13 12 46 46 H 1.09004 * 109.58886 * 65.43758 * 14 13 12 47 47 H 0.97001 * 119.99914 * 180.02562 * 19 18 16 48 48 H 1.09004 * 109.59094 * 66.17180 * 24 15 14 49 49 H 1.09001 * 109.59077 * 186.46452 * 24 15 14 50 50 H 1.09002 * 109.49848 * 58.67902 * 25 12 11 51 51 H 1.09002 * 109.52425 * 298.59375 * 25 12 11 52 52 H 1.08998 * 109.47496 * 180.02562 * 26 6 5 53 53 H 1.09001 * 109.47094 * 300.00067 * 26 6 5 54 54 H 1.08995 * 109.47574 * 180.02562 * 27 26 6 55 55 H 1.08993 * 109.47350 * 59.99787 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.3589 1.2633 -0.7213 5 6 3.9809 2.6611 -0.7218 6 6 4.1883 3.1276 0.7205 7 6 5.1083 2.1686 1.4312 8 8 5.5538 1.2065 0.8423 9 7 5.4352 2.3796 2.7217 10 6 6.3291 1.4471 3.4128 11 6 6.5366 1.9136 4.8550 12 6 7.4706 0.9401 5.5766 13 6 8.8561 0.9875 4.9273 14 6 9.7798 -0.0108 5.6323 15 7 9.7759 0.2735 7.0737 16 6 10.9505 0.4732 7.7488 17 1 10.9655 1.0883 8.6363 18 6 12.1220 -0.1150 7.2922 19 7 13.2889 0.3707 7.6595 20 14 12.0425 -1.5958 6.1562 21 1 12.0867 -1.1393 4.7439 22 1 13.1988 -2.4882 6.4245 23 1 10.7787 -2.3374 6.3975 24 6 8.4878 0.3389 7.7774 25 6 7.5792 1.3358 7.0510 26 6 2.8397 3.1698 1.4418 27 6 2.2176 1.7719 1.4424 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.3450 1.9994 -0.5138 32 1 3.2111 0.9313 -1.7490 33 1 4.0242 0.5694 -0.2075 34 1 3.3155 3.3547 -1.2359 35 1 4.9415 2.6311 -1.2361 36 1 4.6319 4.1232 0.7201 37 1 5.0785 3.1489 3.1928 38 1 7.2901 1.4169 2.8992 39 1 5.8857 0.4513 3.4128 40 1 5.5757 1.9442 5.3687 41 1 6.9801 2.9093 4.8545 42 1 7.0705 -0.0709 5.5004 43 1 9.2662 1.9927 5.0228 44 1 8.7750 0.7257 3.8723 45 1 10.7927 0.0906 5.2426 46 1 9.4215 -1.0255 5.4590 47 1 14.1075 -0.0401 7.3401 48 1 8.0216 -0.6464 7.7789 49 1 8.6484 0.6687 8.8039 50 1 6.5883 1.3227 7.5051 51 1 8.0021 2.3373 7.1292 52 1 2.9873 3.5025 2.4692 53 1 2.1742 3.8633 0.9278 54 1 1.2567 1.8020 1.9558 55 1 2.8830 1.0783 1.9564 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698725417.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:02 Heat of formation + Delta-G solvation = -111.075099 kcal Electronic energy + Delta-G solvation = -30443.936234 eV Core-core repulsion = 26479.301970 eV Total energy + Delta-G solvation = -3964.634263 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.57456 -39.86359 -39.30313 -37.16833 -36.57875 -35.11789 -33.46098 -31.93146 -31.77224 -31.38048 -30.01406 -27.48746 -26.78194 -24.73526 -24.35283 -23.76674 -23.43860 -22.18610 -22.04186 -20.86277 -20.25799 -18.79397 -17.70033 -17.59930 -17.36206 -17.06294 -16.74235 -16.19078 -16.05800 -15.94651 -15.72003 -15.27792 -15.16484 -15.01230 -14.76101 -14.62228 -14.44572 -14.15689 -14.03878 -13.96426 -13.42668 -13.34442 -13.18140 -13.10975 -12.88189 -12.73217 -12.63820 -12.53391 -12.33186 -12.08988 -12.06018 -11.99593 -11.74573 -11.65073 -11.56683 -11.47416 -11.36847 -11.16901 -11.05687 -10.67940 -10.47571 -10.38071 -9.97300 -8.92309 -8.18650 -5.48567 1.26907 1.37191 1.46187 1.73052 2.26913 2.39074 2.85549 3.04553 3.36986 3.62988 3.71593 3.80900 3.86171 3.87581 4.04822 4.06684 4.15832 4.23090 4.29486 4.36040 4.38867 4.43092 4.47583 4.50997 4.53914 4.55728 4.57916 4.61012 4.68388 4.76896 4.79307 4.83198 4.90023 4.91934 4.99708 5.03209 5.05647 5.07528 5.08671 5.20434 5.23190 5.24551 5.26308 5.30587 5.32635 5.36942 5.44569 5.61595 5.64230 5.86824 6.11554 6.35024 6.64842 6.92198 7.37398 7.62900 8.04232 9.01336 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.019947 B = 0.002081 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.394666 B =13449.877628 C =13614.433093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.419 6.419 3 C 0.089 3.911 4 C -0.132 4.132 5 C -0.092 4.092 6 C -0.106 4.106 7 C 0.508 3.492 8 O -0.581 6.581 9 N -0.718 5.718 10 C 0.121 3.879 11 C -0.107 4.107 12 C -0.072 4.072 13 C -0.122 4.122 14 C 0.118 3.882 15 N -0.621 5.621 16 C -0.244 4.244 17 H 0.054 0.946 18 C -0.036 4.036 19 N -0.957 5.957 20 Si 0.944 3.056 21 H -0.279 1.279 22 H -0.310 1.310 23 H -0.264 1.264 24 C 0.138 3.862 25 C -0.115 4.115 26 C -0.100 4.100 27 C -0.142 4.142 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.099 0.901 35 H 0.059 0.941 36 H 0.129 0.871 37 H 0.415 0.585 38 H 0.050 0.950 39 H 0.051 0.949 40 H 0.092 0.908 41 H 0.076 0.924 42 H 0.067 0.933 43 H 0.055 0.945 44 H 0.069 0.931 45 H 0.043 0.957 46 H 0.026 0.974 47 H 0.261 0.739 48 H 0.030 0.970 49 H 0.054 0.946 50 H 0.091 0.909 51 H 0.055 0.945 52 H 0.090 0.910 53 H 0.103 0.897 54 H 0.077 0.923 55 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.374 9.924 -16.084 36.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.339 6.339 3 C 0.032 3.968 4 C -0.170 4.170 5 C -0.130 4.130 6 C -0.127 4.127 7 C 0.296 3.704 8 O -0.461 6.461 9 N -0.370 5.370 10 C -0.003 4.003 11 C -0.144 4.144 12 C -0.092 4.092 13 C -0.161 4.161 14 C -0.007 4.007 15 N -0.346 5.346 16 C -0.374 4.374 17 H 0.072 0.928 18 C -0.231 4.231 19 N -0.603 5.603 20 Si 0.774 3.226 21 H -0.206 1.206 22 H -0.239 1.239 23 H -0.189 1.189 24 C 0.013 3.987 25 C -0.154 4.154 26 C -0.138 4.138 27 C -0.180 4.180 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.106 0.894 31 H 0.098 0.902 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.117 0.883 35 H 0.078 0.922 36 H 0.146 0.854 37 H 0.252 0.748 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.110 0.890 41 H 0.095 0.905 42 H 0.086 0.914 43 H 0.074 0.926 44 H 0.087 0.913 45 H 0.061 0.939 46 H 0.043 0.957 47 H 0.070 0.930 48 H 0.048 0.952 49 H 0.073 0.927 50 H 0.109 0.891 51 H 0.073 0.927 52 H 0.108 0.892 53 H 0.122 0.878 54 H 0.096 0.904 55 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -30.806 9.057 -16.470 36.087 hybrid contribution 0.845 -0.790 -0.031 1.157 sum -29.961 8.266 -16.501 35.189 Atomic orbital electron populations 1.22939 0.79814 1.03435 1.00896 1.87924 1.21286 1.29442 1.95236 1.22270 0.94660 0.84032 0.95819 1.21794 0.95755 0.99151 1.00305 1.21297 1.01355 0.95619 0.94724 1.21500 0.95908 0.99543 0.95778 1.21309 0.80977 0.86222 0.81873 1.90654 1.55842 1.32631 1.66975 1.45960 1.49474 1.29626 1.11977 1.21295 0.93247 0.92811 0.92974 1.21687 1.00520 0.99439 0.92771 1.20932 0.93787 0.99563 0.94883 1.22017 0.96062 0.99339 0.98714 1.21364 0.98345 0.96677 0.84279 1.44519 1.02588 1.83904 1.03596 1.18901 0.85700 1.23122 1.09641 0.92794 1.25875 0.94937 1.01149 1.01149 1.69959 0.97692 1.42379 1.50277 0.85952 0.76415 0.81436 0.78838 1.20612 1.23915 1.18907 1.21176 0.84926 0.97209 0.95357 1.21905 0.99765 0.98899 0.94833 1.21538 0.93960 0.96295 1.02007 1.22047 1.01553 0.97567 0.96869 0.93072 0.92819 0.89382 0.90183 0.92262 0.91970 0.88305 0.92172 0.85360 0.74785 0.93147 0.93081 0.88959 0.90499 0.91432 0.92624 0.91274 0.93920 0.95654 0.93031 0.95184 0.92718 0.89083 0.92664 0.89172 0.87823 0.90409 0.94140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.82 113.37 1.23 1.53 16 2 O -0.42 -8.57 10.35 -148.98 -1.54 -10.11 16 3 C 0.09 1.41 2.61 30.59 0.08 1.49 16 4 C -0.13 -2.57 5.28 30.59 0.16 -2.41 16 5 C -0.09 -1.26 5.09 30.59 0.16 -1.10 16 6 C -0.11 -1.21 3.01 -11.54 -0.03 -1.24 16 7 C 0.51 10.25 5.64 87.66 0.49 10.74 16 8 O -0.58 -17.67 13.66 -3.03 -0.04 -17.71 16 9 N -0.72 -11.75 5.45 -463.04 -2.52 -14.27 16 10 C 0.12 2.57 5.43 86.38 0.47 3.04 16 11 C -0.11 -1.96 4.80 30.59 0.15 -1.81 16 12 C -0.07 -1.91 2.15 -10.75 -0.02 -1.94 16 13 C -0.12 -4.12 5.15 30.68 0.16 -3.97 16 14 C 0.12 5.18 4.20 86.36 0.36 5.55 16 15 N -0.62 -29.72 2.77 -699.09 -1.94 -31.66 16 16 C -0.24 -14.13 10.03 84.03 0.84 -13.29 16 17 H 0.05 3.38 8.06 -2.91 -0.02 3.36 16 18 C -0.04 -2.20 5.23 84.86 0.44 -1.75 16 19 N -0.96 -61.48 13.97 21.65 0.30 -61.17 16 20 Si 0.94 48.69 24.34 68.60 1.67 50.36 16 21 H -0.28 -13.80 6.62 99.48 0.66 -13.15 16 22 H -0.31 -16.16 7.11 99.48 0.71 -15.45 16 23 H -0.26 -13.16 6.64 99.48 0.66 -12.50 16 24 C 0.14 5.21 6.52 86.37 0.56 5.77 16 25 C -0.12 -3.23 5.37 30.67 0.16 -3.07 16 26 C -0.10 -0.72 5.35 30.59 0.16 -0.55 16 27 C -0.14 -1.91 5.32 30.59 0.16 -1.75 16 28 H 0.05 0.48 7.87 -2.39 -0.02 0.46 16 29 H 0.05 0.48 8.08 -2.39 -0.02 0.47 16 30 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.08 0.86 7.79 -2.39 -0.02 0.84 16 32 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 33 H 0.06 1.74 5.51 -2.39 -0.01 1.72 16 34 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.06 1.01 8.10 -2.38 -0.02 0.99 16 36 H 0.13 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.42 3.80 7.89 -92.71 -0.73 3.07 16 38 H 0.05 1.30 6.53 -2.38 -0.02 1.29 16 39 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.07 2.14 6.51 -2.39 -0.02 2.12 16 45 H 0.04 2.10 4.50 -2.39 -0.01 2.09 16 46 H 0.03 1.10 7.07 -2.38 -0.02 1.09 16 47 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 48 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 49 H 0.05 2.11 7.93 -2.39 -0.02 2.09 16 50 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 51 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 52 H 0.09 0.36 7.56 -2.39 -0.02 0.34 16 53 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 54 H 0.08 0.84 7.87 -2.39 -0.02 0.82 16 55 H 0.04 0.81 7.22 -2.39 -0.02 0.79 16 Total: -1.00 -79.25 405.53 1.49 -77.76 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: 0.03 Total: 11.57 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: 5.54 Total: -4.76 kcal Atomic # 7 Polarization: -102.95 SS G_CDS: -4.16 Total: -107.11 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: -1.58 Total: -27.82 kcal Atomic # 14 Polarization: 48.69 SS G_CDS: 1.67 Total: 50.36 kcal Total: -79.25 1.49 -77.76 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698725417.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.314 kcal (2) G-P(sol) polarization free energy of solvation -79.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds