Wall clock time and date at job start Tue Mar 31 2020 22:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42896 * 113.99737 * 2 1 4 4 C 1.53003 * 112.84937 * 294.66877 * 3 2 1 5 5 C 1.50700 * 109.47358 * 291.08713 * 4 3 2 6 6 O 1.21282 * 119.99749 * 355.52361 * 5 4 3 7 7 N 1.34775 * 120.00117 * 175.52270 * 5 4 3 8 8 C 1.46497 * 119.99905 * 180.02562 * 7 5 4 9 9 H 1.09004 * 109.47183 * 324.99551 * 8 7 5 10 10 C 1.53000 * 109.46756 * 205.00014 * 8 7 5 11 11 N 1.46497 * 109.47763 * 54.99918 * 10 8 7 12 12 C 1.36929 * 120.00417 * 180.02562 * 11 10 8 13 13 H 1.07996 * 120.00509 * 359.97438 * 12 11 10 14 14 C 1.38819 * 120.00010 * 179.97438 * 12 11 10 15 15 N 1.31624 * 119.99935 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99930 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47074 * 90.00116 * 16 14 12 18 18 H 1.48505 * 109.46780 * 209.99948 * 16 14 12 19 19 H 1.48494 * 109.47007 * 329.99521 * 16 14 12 20 20 C 1.52992 * 109.47355 * 84.99950 * 8 7 5 21 21 C 1.53000 * 109.47241 * 299.99767 * 20 8 7 22 22 C 1.53004 * 109.47444 * 180.02562 * 21 20 8 23 23 C 1.52999 * 109.47099 * 59.99997 * 22 21 20 24 24 C 1.53000 * 109.46975 * 300.00290 * 23 22 21 25 25 C 1.52995 * 109.47584 * 60.00022 * 24 23 22 26 26 C 1.53783 * 113.69511 * 65.94094 * 3 2 1 27 27 C 1.53774 * 87.08128 * 89.12440 * 26 3 2 28 28 C 1.53782 * 87.08400 * 25.43631 * 27 26 3 29 29 H 1.08999 * 109.46901 * 176.02108 * 1 2 3 30 30 H 1.08994 * 109.47386 * 296.01740 * 1 2 3 31 31 H 1.08994 * 109.46719 * 56.02243 * 1 2 3 32 32 H 1.09004 * 109.47309 * 171.08478 * 4 3 2 33 33 H 1.09000 * 109.47194 * 51.09034 * 4 3 2 34 34 H 0.97001 * 119.99964 * 359.97438 * 7 5 4 35 35 H 1.09010 * 109.47300 * 174.99980 * 10 8 7 36 36 H 1.09001 * 109.47268 * 294.99769 * 10 8 7 37 37 H 0.97002 * 119.99671 * 359.97438 * 11 10 8 38 38 H 0.96996 * 119.99938 * 179.97438 * 15 14 12 39 39 H 1.09004 * 109.47301 * 59.99674 * 20 8 7 40 40 H 1.09000 * 109.47139 * 59.99703 * 21 20 8 41 41 H 1.09004 * 109.46897 * 300.00154 * 21 20 8 42 42 H 1.09001 * 109.46963 * 180.02562 * 22 21 20 43 43 H 1.09006 * 109.46311 * 299.99983 * 22 21 20 44 44 H 1.08996 * 109.47031 * 60.00226 * 23 22 21 45 45 H 1.08998 * 109.47069 * 180.02562 * 23 22 21 46 46 H 1.09009 * 109.47333 * 300.00038 * 24 23 22 47 47 H 1.09000 * 109.47139 * 180.02562 * 24 23 22 48 48 H 1.09000 * 109.47610 * 179.97438 * 25 24 23 49 49 H 1.08996 * 109.47007 * 59.99706 * 25 24 23 50 50 H 1.08996 * 113.61665 * 203.68083 * 26 3 2 51 51 H 1.09005 * 113.61033 * 334.57528 * 26 3 2 52 52 H 1.09002 * 113.61670 * 270.88569 * 27 26 3 53 53 H 1.08998 * 113.69021 * 139.99736 * 27 26 3 54 54 H 1.08996 * 113.61454 * 220.01751 * 28 27 26 55 55 H 1.08998 * 113.61238 * 89.10966 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.7142 2.0876 -1.2813 5 6 2.4503 1.4578 -2.4357 6 8 3.2067 0.5303 -2.2390 7 7 2.2681 1.9251 -3.6866 8 6 2.9832 1.3125 -4.8088 9 1 3.9743 0.9992 -4.4805 10 6 3.1198 2.3303 -5.9430 11 7 3.7616 3.5451 -5.4346 12 6 3.9897 4.6020 -6.2748 13 1 3.6968 4.5400 -7.3124 14 6 4.5974 5.7532 -5.7928 15 7 4.9540 5.8291 -4.5281 16 14 4.9092 7.1948 -6.9392 17 1 3.7359 8.1048 -6.9205 18 1 6.1159 7.9336 -6.4884 19 1 5.1237 6.6918 -8.3198 20 6 2.2025 0.0949 -5.3074 21 6 2.0660 -0.9228 -4.1732 22 6 1.2858 -2.1408 -4.6720 23 6 2.0332 -2.7804 -5.8439 24 6 2.1698 -1.7626 -6.9781 25 6 2.9499 -0.5447 -6.4793 26 6 1.7371 2.1035 1.2859 27 6 3.0197 1.4746 1.8550 28 6 3.4949 1.3189 0.4008 29 1 -0.3633 -1.0252 -0.0713 30 1 -0.3634 0.4507 0.9235 31 1 -0.3632 0.5743 -0.8522 32 1 2.0425 3.1200 -1.1609 33 1 0.6426 2.0680 -1.4796 34 1 1.6628 2.6666 -3.8439 35 1 3.7279 1.9051 -6.7416 36 1 2.1314 2.5768 -6.3310 37 1 4.0244 3.6010 -4.5026 38 1 5.3790 6.6333 -4.1914 39 1 1.2114 0.4082 -5.6357 40 1 1.5339 -0.4671 -3.3382 41 1 3.0570 -1.2361 -3.8450 42 1 1.1881 -2.8657 -3.8638 43 1 0.2947 -1.8277 -5.0006 44 1 3.0242 -3.0934 -5.5153 45 1 1.4772 -3.6478 -6.1995 46 1 1.1787 -1.4496 -7.3067 47 1 2.7019 -2.2184 -7.8131 48 1 3.0476 0.1802 -7.2875 49 1 3.9409 -0.8577 -6.1507 50 1 1.8024 3.1832 1.1518 51 1 0.8309 1.7948 1.8071 52 1 2.8520 0.5252 2.3636 53 1 3.6247 2.1671 2.4402 54 1 4.0078 0.3767 0.2075 55 1 4.0408 2.1841 0.0248 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698880446.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:30 Heat of formation + Delta-G solvation = -89.172305 kcal Electronic energy + Delta-G solvation = -31969.061865 eV Core-core repulsion = 28005.377378 eV Total energy + Delta-G solvation = -3963.684487 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.62096 -40.51225 -38.89451 -37.13338 -36.47072 -35.25355 -33.22949 -32.26659 -31.61039 -30.85667 -28.49979 -27.92474 -26.38822 -25.65288 -24.33384 -23.65294 -22.96202 -21.78253 -21.22546 -20.59359 -20.34108 -19.21637 -17.90485 -17.50906 -17.08135 -16.96604 -16.42233 -16.31210 -15.97128 -15.56733 -15.40534 -15.21037 -15.04251 -14.96038 -14.82769 -14.63513 -14.54037 -14.43863 -13.75222 -13.35282 -13.26056 -13.16227 -13.10057 -12.86137 -12.82452 -12.66289 -12.45092 -12.38311 -12.23865 -12.08593 -11.98551 -11.92122 -11.81445 -11.77186 -11.67854 -11.38709 -11.12818 -11.06739 -10.96935 -10.78757 -10.60586 -10.24342 -9.75964 -8.99542 -7.93722 -5.22842 1.48397 1.49602 1.57912 1.85987 2.32109 2.56445 2.81516 3.40283 3.50148 3.62390 3.68982 3.75592 3.83907 3.88233 3.94951 4.07772 4.18517 4.21259 4.30280 4.35575 4.43789 4.48338 4.51589 4.52279 4.61047 4.63563 4.65963 4.66703 4.69795 4.74956 4.79898 4.80854 4.86527 4.90628 4.93615 5.03914 5.05362 5.16964 5.19745 5.21599 5.29430 5.31104 5.32626 5.36489 5.40295 5.44005 5.49363 5.52675 5.63892 5.74563 6.27121 6.40014 6.73342 7.34602 7.46697 8.08146 8.32791 9.29292 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.007540 B = 0.004391 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3712.533418 B = 6374.974342 C = 9564.164883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.374 6.374 3 C 0.110 3.890 4 C -0.157 4.157 5 C 0.512 3.488 6 O -0.556 6.556 7 N -0.714 5.714 8 C 0.157 3.843 9 H 0.051 0.949 10 C 0.148 3.852 11 N -0.741 5.741 12 C -0.244 4.244 13 H 0.077 0.923 14 C -0.071 4.071 15 N -0.967 5.967 16 Si 0.971 3.029 17 H -0.285 1.285 18 H -0.299 1.299 19 H -0.271 1.271 20 C -0.080 4.080 21 C -0.090 4.090 22 C -0.114 4.114 23 C -0.117 4.117 24 C -0.111 4.111 25 C -0.115 4.115 26 C -0.151 4.151 27 C -0.131 4.131 28 C -0.121 4.121 29 H 0.091 0.909 30 H 0.058 0.942 31 H 0.045 0.955 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.405 0.595 35 H 0.035 0.965 36 H 0.035 0.965 37 H 0.374 0.626 38 H 0.250 0.750 39 H 0.078 0.922 40 H 0.047 0.953 41 H 0.038 0.962 42 H 0.057 0.943 43 H 0.066 0.934 44 H 0.050 0.950 45 H 0.075 0.925 46 H 0.069 0.931 47 H 0.070 0.930 48 H 0.066 0.934 49 H 0.048 0.952 50 H 0.101 0.899 51 H 0.086 0.914 52 H 0.081 0.919 53 H 0.080 0.920 54 H 0.054 0.946 55 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.174 -13.550 6.756 20.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.293 6.293 3 C 0.069 3.931 4 C -0.197 4.197 5 C 0.300 3.700 6 O -0.434 6.434 7 N -0.365 5.365 8 C 0.051 3.949 9 H 0.069 0.931 10 C 0.021 3.979 11 N -0.384 5.384 12 C -0.375 4.375 13 H 0.095 0.905 14 C -0.264 4.264 15 N -0.617 5.617 16 Si 0.800 3.200 17 H -0.212 1.212 18 H -0.226 1.226 19 H -0.196 1.196 20 C -0.100 4.100 21 C -0.128 4.128 22 C -0.152 4.152 23 C -0.154 4.154 24 C -0.149 4.149 25 C -0.153 4.153 26 C -0.188 4.188 27 C -0.168 4.168 28 C -0.159 4.159 29 H 0.110 0.890 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.240 0.760 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.206 0.794 38 H 0.059 0.941 39 H 0.096 0.904 40 H 0.066 0.934 41 H 0.057 0.943 42 H 0.076 0.924 43 H 0.085 0.915 44 H 0.069 0.931 45 H 0.093 0.907 46 H 0.088 0.912 47 H 0.089 0.911 48 H 0.085 0.915 49 H 0.067 0.933 50 H 0.120 0.880 51 H 0.105 0.895 52 H 0.100 0.900 53 H 0.098 0.902 54 H 0.072 0.928 55 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.520 -14.308 6.718 20.164 hybrid contribution 0.382 1.591 -0.310 1.665 sum -12.139 -12.717 6.407 18.711 Atomic orbital electron populations 1.22922 0.80394 1.03375 1.00908 1.87989 1.20639 1.25937 1.94735 1.22226 0.95287 0.83596 0.91959 1.22244 1.02642 1.01539 0.93284 1.20781 0.82156 0.82961 0.84123 1.90688 1.38278 1.29572 1.84824 1.45968 1.47146 1.36910 1.06461 1.21006 0.95157 0.92687 0.86043 0.93071 1.21114 0.96173 0.86095 0.94507 1.42508 1.72298 1.13317 1.10297 1.19612 1.31466 0.93377 0.93093 0.90523 1.25512 1.02198 1.01033 0.97618 1.69823 1.48275 1.28837 1.14811 0.85179 0.76801 0.79551 0.78440 1.21181 1.22584 1.19611 1.21423 0.99195 0.93536 0.95855 1.21410 0.99575 0.95357 0.96430 1.21529 0.99005 0.96740 0.97913 1.21526 1.00214 0.98235 0.95444 1.21486 1.00603 0.94997 0.97770 1.21603 0.98637 0.97942 0.97119 1.23524 0.99181 1.00650 0.95483 1.22774 0.97242 1.01348 0.95445 1.22849 0.94575 1.01673 0.96761 0.89010 0.92388 0.93647 0.87090 0.86981 0.76020 0.94693 0.94683 0.79364 0.94122 0.90372 0.93415 0.94280 0.92437 0.91500 0.93087 0.90679 0.91215 0.91091 0.91509 0.93283 0.88009 0.89529 0.90017 0.90180 0.92755 0.90254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 10.63 113.37 1.20 1.57 16 2 O -0.37 -9.97 10.29 -147.42 -1.52 -11.49 16 3 C 0.11 2.72 0.39 -10.26 0.00 2.72 16 4 C -0.16 -3.91 5.15 29.85 0.15 -3.76 16 5 C 0.51 16.54 5.98 87.66 0.52 17.06 16 6 O -0.56 -21.35 11.82 -1.48 -0.02 -21.37 16 7 N -0.71 -22.74 4.41 -442.55 -1.95 -24.69 16 8 C 0.16 5.33 1.99 44.99 0.09 5.42 16 9 H 0.05 2.10 7.58 -2.39 -0.02 2.08 16 10 C 0.15 5.69 5.31 86.38 0.46 6.15 16 11 N -0.74 -36.62 5.43 -343.45 -1.87 -38.48 16 12 C -0.24 -13.25 9.99 84.04 0.84 -12.41 16 13 H 0.08 3.99 7.83 -2.91 -0.02 3.96 16 14 C -0.07 -4.00 5.50 84.86 0.47 -3.54 16 15 N -0.97 -58.25 13.06 21.65 0.28 -57.96 16 16 Si 0.97 45.36 29.55 68.60 2.03 47.39 16 17 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 18 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 19 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 20 C -0.08 -2.22 1.96 -10.79 -0.02 -2.24 16 21 C -0.09 -2.56 3.73 30.60 0.11 -2.45 16 22 C -0.11 -2.56 5.92 30.60 0.18 -2.38 16 23 C -0.12 -2.36 5.92 30.59 0.18 -2.18 16 24 C -0.11 -2.25 5.92 30.59 0.18 -2.06 16 25 C -0.11 -2.94 4.85 30.59 0.15 -2.79 16 26 C -0.15 -2.85 7.21 31.12 0.22 -2.63 16 27 C -0.13 -2.76 8.02 31.12 0.25 -2.51 16 28 C -0.12 -3.39 6.07 31.12 0.19 -3.20 16 29 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.06 0.84 6.85 -2.39 -0.02 0.82 16 31 H 0.04 0.77 6.50 -2.39 -0.02 0.76 16 32 H 0.11 2.67 7.99 -2.38 -0.02 2.65 16 33 H 0.11 2.21 6.55 -2.39 -0.02 2.20 16 34 H 0.40 12.14 8.60 -92.71 -0.80 11.34 16 35 H 0.04 1.37 6.71 -2.38 -0.02 1.35 16 36 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.37 20.06 7.33 -92.71 -0.68 19.38 16 38 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 39 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.05 1.48 5.78 -2.39 -0.01 1.46 16 41 H 0.04 1.34 7.53 -2.39 -0.02 1.32 16 42 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 44 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 47 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 48 H 0.07 1.72 6.54 -2.39 -0.02 1.71 16 49 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 50 H 0.10 1.72 8.00 -2.39 -0.02 1.70 16 51 H 0.09 1.37 6.81 -2.38 -0.02 1.35 16 52 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 53 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 54 H 0.05 1.80 7.98 -2.39 -0.02 1.78 16 55 H 0.08 2.36 8.10 -2.39 -0.02 2.34 16 Total: -1.00 -67.71 413.13 1.54 -66.17 By element: Atomic # 1 Polarization: 50.28 SS G_CDS: -0.61 Total: 49.67 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: 5.18 Total: -9.23 kcal Atomic # 7 Polarization: -117.61 SS G_CDS: -3.53 Total: -121.14 kcal Atomic # 8 Polarization: -31.33 SS G_CDS: -1.54 Total: -32.86 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -67.71 1.54 -66.17 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698880446.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.999 kcal (2) G-P(sol) polarization free energy of solvation -67.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds