Wall clock time and date at job start Tue Mar 31 2020 22:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42893 * 113.99946 * 2 1 4 4 H 1.09004 * 109.47596 * 29.99719 * 3 2 1 5 5 C 1.50701 * 109.47256 * 269.99478 * 3 2 1 6 6 O 1.21282 * 120.00225 * 331.05874 * 5 3 2 7 7 N 1.34782 * 120.00154 * 151.05122 * 5 3 2 8 8 C 1.46924 * 120.62873 * 4.47000 * 7 5 3 9 9 C 1.53625 * 108.54560 * 126.36428 * 8 7 5 10 10 C 1.53045 * 109.23953 * 54.85508 * 9 8 7 11 11 C 1.53002 * 109.44887 * 178.49984 * 10 9 8 12 12 C 1.53001 * 109.46808 * 295.06326 * 11 10 9 13 13 N 1.46500 * 109.46655 * 180.02562 * 12 11 10 14 14 C 1.46495 * 120.00042 * 269.99548 * 13 12 11 15 15 C 1.36944 * 120.00223 * 89.99647 * 13 12 11 16 16 H 1.07999 * 119.99425 * 22.63719 * 15 13 12 17 17 C 1.38806 * 119.99864 * 202.62639 * 15 13 12 18 18 N 1.31618 * 120.00496 * 11.15241 * 17 15 13 19 19 Si 1.86807 * 119.99776 * 191.14701 * 17 15 13 20 20 H 1.48496 * 109.46931 * 60.00443 * 19 17 15 21 21 H 1.48501 * 109.47008 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47182 * 300.00383 * 19 17 15 23 23 C 1.53044 * 109.53672 * 298.51279 * 10 9 8 24 24 C 1.46921 * 120.63120 * 184.74410 * 7 5 3 25 25 C 1.53004 * 109.47194 * 149.99750 * 3 2 1 26 26 C 1.53780 * 113.61517 * 209.05750 * 25 3 2 27 27 C 1.54042 * 86.98545 * 140.02076 * 26 25 3 28 28 C 1.53780 * 87.07960 * 334.56521 * 27 26 25 29 29 H 1.09000 * 109.47144 * 179.97438 * 1 2 3 30 30 H 1.08990 * 109.47369 * 300.00133 * 1 2 3 31 31 H 1.09003 * 109.46606 * 60.00414 * 1 2 3 32 32 H 1.08998 * 109.58632 * 246.20027 * 8 7 5 33 33 H 1.09003 * 109.58682 * 6.62464 * 8 7 5 34 34 H 1.08997 * 109.63512 * 294.86762 * 9 8 7 35 35 H 1.08991 * 109.43461 * 174.72172 * 9 8 7 36 36 H 1.08998 * 109.45846 * 58.52878 * 10 9 8 37 37 H 1.09001 * 109.47210 * 55.06194 * 11 10 9 38 38 H 1.08995 * 109.46897 * 175.05870 * 11 10 9 39 39 H 1.08993 * 109.46976 * 299.99594 * 12 11 10 40 40 H 1.08990 * 109.47442 * 59.99763 * 12 11 10 41 41 H 1.09002 * 109.47439 * 94.67824 * 14 13 12 42 42 H 1.09000 * 109.47481 * 214.67797 * 14 13 12 43 43 H 1.09004 * 109.47400 * 334.68098 * 14 13 12 44 44 H 0.96997 * 120.00094 * 179.97438 * 18 17 15 45 45 H 1.08997 * 109.49615 * 301.41264 * 23 10 9 46 46 H 1.09001 * 109.49547 * 181.31978 * 23 10 9 47 47 H 1.09005 * 109.58720 * 353.38111 * 24 7 5 48 48 H 1.08995 * 109.58552 * 113.65668 * 24 7 5 49 49 H 1.09000 * 112.84577 * 77.86235 * 25 3 2 50 50 H 1.09006 * 113.61222 * 254.61268 * 26 25 3 51 51 H 1.09004 * 113.61258 * 25.51200 * 26 25 3 52 52 H 1.09004 * 113.61834 * 220.02461 * 27 26 25 53 53 H 1.08996 * 113.69334 * 89.12615 * 27 26 25 54 54 H 1.09000 * 113.61970 * 270.88443 * 28 27 26 55 55 H 1.09000 * 113.61392 * 139.97706 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2147 1.7643 -1.4208 6 8 2.4088 0.9506 -2.2989 7 7 2.1816 3.0790 -1.7158 8 6 2.0450 4.0819 -0.6508 9 6 3.1898 5.0973 -0.7860 10 6 3.1831 5.6793 -2.2015 11 6 4.2984 6.7188 -2.3302 12 6 4.0036 7.9002 -1.4037 13 7 5.0711 8.8959 -1.5274 14 6 6.2463 8.8219 -0.6559 15 6 4.9704 9.8958 -2.4576 16 1 4.0014 10.1848 -2.8369 17 6 6.1138 10.5379 -2.9129 18 7 7.3017 10.0495 -2.6251 19 14 5.9665 12.0951 -3.9342 20 1 5.2587 13.1373 -3.1483 21 1 7.3228 12.5814 -4.2936 22 1 5.2011 11.8040 -5.1730 23 6 3.4121 4.5575 -3.2171 24 6 2.2754 3.5363 -3.1089 25 6 3.3589 1.2632 0.7213 26 6 3.7368 2.5909 1.3991 27 6 4.2721 1.7465 2.5710 28 6 3.2848 0.6527 2.1308 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.0868 4.5920 -0.7499 33 1 2.1019 3.5924 0.3215 34 1 4.1428 4.6017 -0.6010 35 1 3.0501 5.9000 -0.0621 36 1 2.2208 6.1532 -2.3947 37 1 5.2503 6.2670 -2.0512 38 1 4.3509 7.0696 -3.3608 39 1 3.0518 8.3520 -1.6827 40 1 3.9510 7.5494 -0.3731 41 1 7.0427 8.2789 -1.1650 42 1 6.5874 9.8297 -0.4194 43 1 5.9835 8.3018 0.2653 44 1 8.1006 10.4980 -2.9435 45 1 4.3630 4.0670 -3.0091 46 1 3.4306 4.9761 -4.2234 47 1 2.4843 2.6866 -3.7591 48 1 1.3349 4.0004 -3.4052 49 1 4.1552 0.8451 0.1056 50 1 4.5111 3.1464 0.8699 51 1 2.8769 3.2072 1.6619 52 1 4.0482 2.1679 3.5510 53 1 5.3181 1.4599 2.4624 54 1 2.3016 0.7400 2.5933 55 1 3.6944 -0.3555 2.1920 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698954291.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:46 Heat of formation + Delta-G solvation = -58.705257 kcal Electronic energy + Delta-G solvation = -31299.919060 eV Core-core repulsion = 27337.555723 eV Total energy + Delta-G solvation = -3962.363337 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.83787 -39.80212 -38.99060 -37.97845 -37.38506 -35.18993 -33.21981 -32.35447 -30.77071 -29.91509 -27.89800 -27.36048 -26.61958 -26.33724 -24.80402 -24.28423 -23.57172 -22.05372 -21.29128 -20.51625 -20.05183 -18.72690 -18.51580 -17.71688 -17.16326 -16.88252 -16.72879 -16.17597 -15.89524 -15.66097 -15.57299 -15.50139 -15.12837 -15.01102 -14.65230 -14.50892 -14.21015 -14.05233 -14.00996 -13.69639 -13.31569 -13.17435 -13.00277 -12.87807 -12.84186 -12.74063 -12.56094 -12.41932 -12.21517 -12.19102 -12.12837 -12.02826 -11.80869 -11.64164 -11.58611 -11.45174 -11.35516 -11.20896 -11.12847 -11.00635 -10.60147 -10.24552 -9.68292 -8.72832 -7.79924 -5.27253 1.44934 1.46545 1.48429 1.54963 1.86961 2.52923 2.66307 3.33441 3.34510 3.59900 3.65641 3.70354 3.84234 3.86178 3.92088 3.95684 4.04821 4.07874 4.13775 4.26696 4.32941 4.40507 4.47309 4.49693 4.50810 4.60156 4.69322 4.78551 4.80475 4.81287 4.83195 4.88486 4.89712 4.91227 4.95880 5.00197 5.07650 5.10122 5.14164 5.17352 5.26402 5.28585 5.32696 5.36276 5.49159 5.57174 5.59329 5.62534 5.68752 5.78264 5.98626 6.36930 6.37516 7.08717 7.19267 7.93803 8.35961 9.23501 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018870 B = 0.002464 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.450096 B =11358.780486 C =12278.204468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.380 6.380 3 C 0.090 3.910 4 H 0.113 0.887 5 C 0.486 3.514 6 O -0.582 6.582 7 N -0.603 5.603 8 C 0.093 3.907 9 C -0.125 4.125 10 C -0.074 4.074 11 C -0.116 4.116 12 C 0.151 3.849 13 N -0.624 5.624 14 C 0.178 3.822 15 C -0.257 4.257 16 H 0.071 0.929 17 C -0.058 4.058 18 N -0.942 5.942 19 Si 0.966 3.034 20 H -0.277 1.277 21 H -0.297 1.297 22 H -0.277 1.277 23 C -0.122 4.122 24 C 0.114 3.886 25 C -0.113 4.113 26 C -0.135 4.135 27 C -0.138 4.138 28 C -0.114 4.114 29 H 0.100 0.900 30 H 0.072 0.928 31 H 0.031 0.969 32 H 0.093 0.907 33 H 0.111 0.889 34 H 0.058 0.942 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.031 0.969 38 H 0.029 0.971 39 H 0.047 0.953 40 H 0.065 0.935 41 H -0.003 1.003 42 H 0.014 0.986 43 H 0.033 0.967 44 H 0.246 0.754 45 H 0.045 0.955 46 H 0.071 0.929 47 H 0.068 0.932 48 H 0.087 0.913 49 H 0.071 0.929 50 H 0.067 0.933 51 H 0.112 0.888 52 H 0.087 0.913 53 H 0.076 0.924 54 H 0.097 0.903 55 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.779 -17.748 12.052 26.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.297 6.297 3 C 0.029 3.971 4 H 0.131 0.869 5 C 0.275 3.725 6 O -0.462 6.462 7 N -0.337 5.337 8 C -0.028 4.028 9 C -0.163 4.163 10 C -0.093 4.093 11 C -0.156 4.156 12 C 0.026 3.974 13 N -0.347 5.347 14 C 0.033 3.967 15 C -0.387 4.387 16 H 0.089 0.911 17 C -0.253 4.253 18 N -0.590 5.590 19 Si 0.795 3.205 20 H -0.203 1.203 21 H -0.224 1.224 22 H -0.203 1.203 23 C -0.160 4.160 24 C -0.009 4.009 25 C -0.132 4.132 26 C -0.172 4.172 27 C -0.175 4.175 28 C -0.152 4.152 29 H 0.118 0.882 30 H 0.090 0.910 31 H 0.050 0.950 32 H 0.112 0.888 33 H 0.129 0.871 34 H 0.077 0.923 35 H 0.114 0.886 36 H 0.101 0.899 37 H 0.050 0.950 38 H 0.048 0.952 39 H 0.065 0.935 40 H 0.083 0.917 41 H 0.016 0.984 42 H 0.033 0.967 43 H 0.051 0.949 44 H 0.055 0.945 45 H 0.064 0.936 46 H 0.090 0.910 47 H 0.087 0.913 48 H 0.105 0.895 49 H 0.090 0.910 50 H 0.086 0.914 51 H 0.130 0.870 52 H 0.106 0.894 53 H 0.094 0.906 54 H 0.116 0.884 55 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.432 -18.281 11.577 26.577 hybrid contribution 0.695 0.996 -1.508 1.936 sum -14.737 -17.285 10.069 24.847 Atomic orbital electron populations 1.23085 0.79359 1.04331 1.00774 1.87995 1.21483 1.25917 1.94352 1.22280 0.97728 0.86622 0.90433 0.86942 1.22023 0.75879 0.82074 0.92535 1.90658 1.50516 1.54187 1.50846 1.48323 1.71281 1.05589 1.08459 1.22459 0.99876 0.89575 0.90871 1.22085 0.98610 0.98736 0.96902 1.21050 0.98934 0.94092 0.95237 1.22018 0.97386 0.96498 0.99706 1.21074 0.90548 0.88140 0.97652 1.44275 1.21036 1.29860 1.39530 1.20510 0.88339 0.97730 0.90085 1.19519 0.92359 1.10256 1.16615 0.91108 1.25794 0.95376 1.03000 1.01118 1.70232 0.97156 1.40802 1.50773 0.85353 0.76138 0.80105 0.78942 1.20261 1.22354 1.20266 1.21881 0.97810 0.96120 1.00217 1.21571 0.99270 0.97426 0.82593 1.22642 0.93701 1.00442 0.96435 1.23306 1.02125 0.94791 0.96973 1.22857 0.99119 0.96670 0.98900 1.22771 1.00807 0.98637 0.92976 0.88159 0.90986 0.94988 0.88843 0.87147 0.92296 0.88615 0.89904 0.95021 0.95232 0.93501 0.91651 0.98436 0.96744 0.94869 0.94519 0.93597 0.91001 0.91307 0.89526 0.91033 0.91408 0.87029 0.89392 0.90564 0.88416 0.91763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 10.81 113.37 1.23 1.51 16 2 O -0.38 -8.08 9.68 -131.77 -1.28 -9.36 16 3 C 0.09 1.66 1.85 29.85 0.06 1.72 16 4 H 0.11 1.29 5.94 -2.39 -0.01 1.28 16 5 C 0.49 12.28 6.82 87.66 0.60 12.88 16 6 O -0.58 -20.48 16.14 14.18 0.23 -20.25 16 7 N -0.60 -12.63 2.97 -818.07 -2.43 -15.06 16 8 C 0.09 1.33 5.73 86.51 0.50 1.82 16 9 C -0.13 -2.33 5.06 30.82 0.16 -2.18 16 10 C -0.07 -1.78 2.15 -10.76 -0.02 -1.80 16 11 C -0.12 -4.00 5.01 30.60 0.15 -3.85 16 12 C 0.15 5.58 5.46 86.38 0.47 6.06 16 13 N -0.62 -30.75 2.92 -726.97 -2.13 -32.88 16 14 C 0.18 8.80 9.01 127.77 1.15 9.95 16 15 C -0.26 -14.03 9.67 84.03 0.81 -13.21 16 16 H 0.07 3.72 7.84 -2.91 -0.02 3.70 16 17 C -0.06 -3.30 5.14 84.86 0.44 -2.86 16 18 N -0.94 -56.51 10.59 21.65 0.23 -56.28 16 19 Si 0.97 45.28 29.57 68.60 2.03 47.31 16 20 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 21 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 22 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 23 C -0.12 -3.04 5.36 30.67 0.16 -2.87 16 24 C 0.11 2.59 6.44 86.36 0.56 3.14 16 25 C -0.11 -1.95 3.40 -10.27 -0.03 -1.99 16 26 C -0.14 -1.73 6.13 31.21 0.19 -1.54 16 27 C -0.14 -1.62 8.09 31.21 0.25 -1.37 16 28 C -0.11 -1.50 7.29 31.12 0.23 -1.27 16 29 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.07 0.58 8.08 -2.39 -0.02 0.56 16 31 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.11 1.11 2.39 -2.39 -0.01 1.10 16 34 H 0.06 1.25 7.02 -2.39 -0.02 1.23 16 35 H 0.10 1.56 6.50 -2.39 -0.02 1.55 16 36 H 0.08 1.80 8.14 -2.39 -0.02 1.79 16 37 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.05 1.67 8.03 -2.39 -0.02 1.65 16 40 H 0.07 2.04 6.25 -2.39 -0.01 2.02 16 41 H 0.00 -0.15 7.38 -2.39 -0.02 -0.16 16 42 H 0.01 0.75 7.23 -2.39 -0.02 0.73 16 43 H 0.03 1.35 7.84 -2.39 -0.02 1.33 16 44 H 0.25 14.42 8.31 -92.71 -0.77 13.64 16 45 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 47 H 0.07 1.86 7.00 -2.38 -0.02 1.84 16 48 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 49 H 0.07 1.64 8.11 -2.39 -0.02 1.62 16 50 H 0.07 1.06 7.02 -2.38 -0.02 1.04 16 51 H 0.11 0.90 6.04 -2.38 -0.01 0.88 16 52 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 53 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 54 H 0.10 0.98 8.10 -2.39 -0.02 0.96 16 55 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -74.73 413.39 4.40 -70.33 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: 0.85 Total: 12.05 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: 6.89 Total: 4.14 kcal Atomic # 7 Polarization: -99.89 SS G_CDS: -4.32 Total: -104.22 kcal Atomic # 8 Polarization: -28.56 SS G_CDS: -1.05 Total: -29.61 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -74.73 4.40 -70.33 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698954291.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.628 kcal (2) G-P(sol) polarization free energy of solvation -74.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds