Wall clock time and date at job start Tue Mar 31 2020 22:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36931 * 120.00181 * 2 1 4 4 H 1.08004 * 120.00306 * 202.34850 * 3 2 1 5 5 C 1.38818 * 120.00252 * 22.34681 * 3 2 1 6 6 N 1.31623 * 119.99609 * 11.34399 * 5 3 2 7 7 Si 1.86797 * 120.00426 * 191.34435 * 5 3 2 8 8 H 1.48490 * 109.47053 * 89.99853 * 7 5 3 9 9 H 1.48504 * 109.47109 * 210.00177 * 7 5 3 10 10 H 1.48504 * 109.46827 * 330.00224 * 7 5 3 11 11 C 1.46498 * 119.99877 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.47057 * 269.99936 * 11 2 1 13 13 C 1.53001 * 109.47233 * 180.02562 * 12 11 2 14 14 C 1.53043 * 109.45750 * 295.06709 * 13 12 11 15 15 C 1.53189 * 109.31383 * 178.61333 * 14 13 12 16 16 N 1.46928 * 108.77739 * 54.63563 * 15 14 13 17 17 C 1.34776 * 120.63421 * 126.41120 * 16 15 14 18 18 O 1.21280 * 120.00078 * 179.97438 * 17 16 15 19 19 C 1.50697 * 119.99739 * 359.97438 * 17 16 15 20 20 C 1.53002 * 109.46797 * 179.97438 * 19 17 16 21 21 H 1.08998 * 109.52502 * 55.00072 * 20 19 17 22 22 C 1.53177 * 109.52131 * 175.12822 * 20 19 17 23 23 C 1.53187 * 109.03436 * 176.82524 * 22 20 19 24 24 C 1.53092 * 109.21116 * 303.11066 * 23 22 20 25 25 O 1.42909 * 109.41526 * 57.57769 * 24 23 22 26 26 C 1.42907 * 114.09290 * 298.84060 * 25 24 23 27 27 C 1.46930 * 118.73470 * 306.39465 * 16 15 14 28 28 C 1.53039 * 109.46511 * 174.99762 * 13 12 11 29 29 H 1.09001 * 109.47138 * 274.21038 * 1 2 3 30 30 H 1.08998 * 109.47139 * 34.20640 * 1 2 3 31 31 H 1.08990 * 109.47375 * 154.21049 * 1 2 3 32 32 H 0.96998 * 120.00044 * 179.97438 * 6 5 3 33 33 H 1.08997 * 109.47118 * 150.00035 * 11 2 1 34 34 H 1.09001 * 109.47264 * 29.99632 * 11 2 1 35 35 H 1.08996 * 109.47533 * 59.99801 * 12 11 2 36 36 H 1.08998 * 109.47091 * 299.99521 * 12 11 2 37 37 H 1.09003 * 109.46126 * 55.02027 * 13 12 11 38 38 H 1.08998 * 109.49597 * 298.56390 * 14 13 12 39 39 H 1.09003 * 109.49838 * 58.66045 * 14 13 12 40 40 H 1.09002 * 109.58658 * 294.84611 * 15 14 13 41 41 H 1.09000 * 109.59073 * 174.42250 * 15 14 13 42 42 H 1.09002 * 109.47399 * 299.99703 * 19 17 16 43 43 H 1.09002 * 109.47231 * 59.99995 * 19 17 16 44 44 H 1.09000 * 109.54512 * 296.75349 * 22 20 19 45 45 H 1.08999 * 109.54663 * 57.01758 * 22 20 19 46 46 H 1.09000 * 109.52621 * 183.17633 * 23 22 20 47 47 H 1.09000 * 109.52025 * 63.04421 * 23 22 20 48 48 H 1.09001 * 109.48334 * 297.59201 * 24 23 22 49 49 H 1.08994 * 109.49240 * 177.56108 * 24 23 22 50 50 H 1.08999 * 109.48246 * 301.17296 * 26 25 24 51 51 H 1.09003 * 109.48577 * 181.14876 * 26 25 24 52 52 H 1.09005 * 109.58593 * 293.81270 * 27 16 15 53 53 H 1.09004 * 109.58455 * 173.39598 * 27 16 15 54 54 H 1.08994 * 109.49494 * 301.34027 * 28 13 12 55 55 H 1.09003 * 109.49165 * 61.43041 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1689 1.2210 -0.3556 5 6 1.5338 2.3429 0.4571 6 7 0.3841 2.2691 1.0936 7 14 2.3367 4.0047 0.1688 8 1 1.8680 4.5632 -1.1248 9 1 1.9682 4.9303 1.2702 10 1 3.8123 3.8418 0.1319 11 6 2.1974 -1.2687 -0.0006 12 6 2.4524 -1.7110 1.4417 13 6 3.2180 -3.0358 1.4412 14 6 2.3414 -4.1309 0.8292 15 6 3.1234 -5.4477 0.7985 16 7 3.6015 -5.7456 2.1555 17 6 3.3333 -6.9336 2.7328 18 8 3.7340 -7.1675 3.8534 19 6 2.5356 -7.9712 1.9859 20 6 2.3756 -9.2173 2.8592 21 1 1.9355 -8.9374 3.8163 22 6 1.4639 -10.2246 2.1516 23 6 1.3752 -11.4985 2.9978 24 6 2.7848 -12.0500 3.2272 25 8 3.5879 -11.0522 3.8611 26 6 3.7465 -9.8570 3.0940 27 6 4.3779 -4.7238 2.8711 28 6 3.5819 -3.4151 2.8785 29 1 -0.3633 0.0755 1.0249 30 1 -0.3633 0.8499 -0.5777 31 1 -0.3633 -0.9252 -0.4471 32 1 -0.0460 3.0775 1.4134 33 1 3.1498 -1.1382 -0.5143 34 1 1.6083 -2.0282 -0.5147 35 1 1.5001 -1.8416 1.9556 36 1 3.0416 -0.9517 1.9559 37 1 4.1289 -2.9286 0.8522 38 1 1.4418 -4.2559 1.4318 39 1 2.0633 -3.8491 -0.1864 40 1 3.9744 -5.3518 0.1241 41 1 2.4720 -6.2518 0.4560 42 1 1.5522 -7.5684 1.7434 43 1 3.0563 -8.2371 1.0660 44 1 0.4693 -9.7951 2.0322 45 1 1.8780 -10.4663 1.1727 46 1 0.7738 -12.2421 2.4748 47 1 0.9140 -11.2666 3.9578 48 1 3.2297 -12.3204 2.2696 49 1 2.7308 -12.9322 3.8650 50 1 4.2040 -10.0987 2.1346 51 1 4.3852 -9.1593 3.6357 52 1 5.3312 -4.5689 2.3658 53 1 4.5541 -5.0501 3.8961 54 1 4.1866 -2.6238 3.3215 55 1 2.6705 -3.5468 3.4617 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698955957.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:11 Heat of formation + Delta-G solvation = -103.256500 kcal Electronic energy + Delta-G solvation = -30192.326291 eV Core-core repulsion = 26228.031068 eV Total energy + Delta-G solvation = -3964.295223 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.47855 -40.16374 -38.94071 -37.46236 -35.42535 -35.14152 -33.28185 -32.95231 -32.04016 -30.27467 -28.61782 -27.89912 -26.34712 -25.93294 -24.39373 -24.10380 -23.30574 -21.96926 -21.22972 -20.94089 -19.80849 -18.71443 -18.09202 -17.33391 -17.01517 -16.93808 -16.77678 -16.34589 -15.82380 -15.61611 -15.58110 -15.25435 -15.14916 -15.02826 -14.97597 -14.41812 -14.28616 -14.02958 -13.74295 -13.60595 -13.51495 -13.34377 -13.23550 -12.85885 -12.79550 -12.67193 -12.55386 -12.40899 -12.16641 -12.11541 -12.09835 -12.02500 -11.93012 -11.76762 -11.60763 -11.55341 -11.30204 -11.23721 -11.06168 -10.63709 -10.61565 -10.35931 -9.61135 -8.74619 -7.81256 -5.28211 1.46078 1.46804 1.55539 1.64139 2.04584 2.52023 3.00128 3.32304 3.48766 3.68008 3.75970 3.84403 3.85073 3.90387 4.02522 4.05255 4.07168 4.16916 4.26705 4.35495 4.37874 4.42746 4.51606 4.56715 4.61763 4.63805 4.70708 4.75474 4.76737 4.80736 4.84460 4.88674 4.90870 4.94445 4.98770 5.01475 5.08625 5.09334 5.12794 5.14336 5.26313 5.29284 5.32939 5.35998 5.43188 5.51097 5.60965 5.63620 5.67783 5.76480 6.31386 6.36085 6.46595 7.17969 7.20311 7.92317 8.34580 9.22566 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.029758 B = 0.001839 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.690194 B =15224.242523 C =15689.613173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.624 5.624 3 C -0.256 4.256 4 H 0.072 0.928 5 C -0.060 4.060 6 N -0.943 5.943 7 Si 0.967 3.033 8 H -0.286 1.286 9 H -0.298 1.298 10 H -0.268 1.268 11 C 0.150 3.850 12 C -0.116 4.116 13 C -0.075 4.075 14 C -0.127 4.127 15 C 0.107 3.893 16 N -0.610 5.610 17 C 0.505 3.495 18 O -0.585 6.585 19 C -0.127 4.127 20 C -0.104 4.104 21 H 0.056 0.944 22 C -0.114 4.114 23 C -0.155 4.155 24 C 0.049 3.951 25 O -0.412 6.412 26 C 0.063 3.937 27 C 0.116 3.884 28 C -0.123 4.123 29 H -0.003 1.003 30 H 0.015 0.985 31 H 0.032 0.968 32 H 0.246 0.754 33 H 0.046 0.954 34 H 0.064 0.936 35 H 0.031 0.969 36 H 0.029 0.971 37 H 0.080 0.920 38 H 0.054 0.946 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.114 0.886 42 H 0.118 0.882 43 H 0.124 0.876 44 H 0.080 0.920 45 H 0.084 0.916 46 H 0.095 0.905 47 H 0.057 0.943 48 H 0.063 0.937 49 H 0.099 0.901 50 H 0.060 0.940 51 H 0.081 0.919 52 H 0.081 0.919 53 H 0.071 0.929 54 H 0.069 0.931 55 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.415 -28.938 -3.123 29.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.347 5.347 3 C -0.386 4.386 4 H 0.089 0.911 5 C -0.254 4.254 6 N -0.590 5.590 7 Si 0.796 3.204 8 H -0.212 1.212 9 H -0.225 1.225 10 H -0.192 1.192 11 C 0.025 3.975 12 C -0.157 4.157 13 C -0.094 4.094 14 C -0.165 4.165 15 C -0.014 4.014 16 N -0.343 5.343 17 C 0.295 3.705 18 O -0.466 6.466 19 C -0.167 4.167 20 C -0.123 4.123 21 H 0.075 0.925 22 C -0.152 4.152 23 C -0.193 4.193 24 C -0.027 4.027 25 O -0.331 6.331 26 C -0.013 4.013 27 C -0.007 4.007 28 C -0.161 4.161 29 H 0.015 0.985 30 H 0.034 0.966 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.050 0.950 36 H 0.047 0.953 37 H 0.099 0.901 38 H 0.073 0.927 39 H 0.110 0.890 40 H 0.107 0.893 41 H 0.132 0.868 42 H 0.136 0.864 43 H 0.142 0.858 44 H 0.099 0.901 45 H 0.103 0.897 46 H 0.114 0.886 47 H 0.076 0.924 48 H 0.081 0.919 49 H 0.117 0.883 50 H 0.079 0.921 51 H 0.100 0.900 52 H 0.099 0.901 53 H 0.090 0.910 54 H 0.088 0.912 55 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.615 -28.961 -2.333 29.419 hybrid contribution -0.061 1.799 0.480 1.863 sum 4.554 -27.162 -1.853 27.604 Atomic orbital electron populations 1.20502 0.83001 0.95922 0.97182 1.44282 1.02158 1.02129 1.86148 1.19567 0.98027 0.86733 1.34308 0.91066 1.25804 0.98585 1.01905 0.99103 1.70244 1.19413 1.27238 1.42118 0.85257 0.78472 0.79959 0.76742 1.21242 1.22481 1.19238 1.21079 0.95605 0.86358 0.94438 1.22024 0.98380 0.95823 0.99444 1.21053 0.98914 0.93756 0.95669 1.21995 0.98073 0.94101 1.02373 1.22032 0.99738 0.98011 0.81655 1.48312 1.53832 1.14541 1.17603 1.21353 0.79748 0.83163 0.86227 1.90664 1.55014 1.79510 1.21408 1.21771 1.02165 0.92817 0.99921 1.21484 0.97089 0.94694 0.99025 0.92539 1.21668 1.00083 0.94385 0.99020 1.22187 0.97613 0.98601 1.00891 1.22810 0.90478 0.90797 0.98610 1.87937 1.71460 1.26841 1.46885 1.22780 0.96608 0.85835 0.96115 1.21511 0.94327 0.86954 0.97899 1.21886 0.99925 0.96826 0.97473 0.98484 0.96646 0.94965 0.94512 0.93516 0.91741 0.95042 0.95253 0.90121 0.92672 0.89003 0.89272 0.86825 0.86383 0.85769 0.90130 0.89733 0.88639 0.92444 0.91910 0.88335 0.92133 0.90044 0.90057 0.91004 0.91225 0.93512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.88 9.01 127.77 1.15 10.03 16 2 N -0.62 -30.96 2.92 -726.96 -2.13 -33.09 16 3 C -0.26 -14.03 9.67 84.04 0.81 -13.21 16 4 H 0.07 3.77 7.84 -2.91 -0.02 3.75 16 5 C -0.06 -3.38 5.13 84.86 0.44 -2.94 16 6 N -0.94 -56.68 10.59 21.65 0.23 -56.45 16 7 Si 0.97 45.44 29.57 68.60 2.03 47.47 16 8 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 9 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 10 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 11 C 0.15 5.63 5.46 86.38 0.47 6.10 16 12 C -0.12 -4.06 5.01 30.59 0.15 -3.91 16 13 C -0.07 -1.80 2.15 -10.77 -0.02 -1.83 16 14 C -0.13 -2.35 5.14 30.67 0.16 -2.19 16 15 C 0.11 1.38 6.34 86.36 0.55 1.93 16 16 N -0.61 -11.54 2.97 -818.90 -2.43 -13.97 16 17 C 0.50 10.59 7.43 87.66 0.65 11.24 16 18 O -0.59 -17.43 13.39 -3.03 -0.04 -17.47 16 19 C -0.13 -1.58 3.53 29.85 0.11 -1.47 16 20 C -0.10 -1.64 2.03 -10.70 -0.02 -1.66 16 21 H 0.06 1.25 7.96 -2.39 -0.02 1.23 16 22 C -0.11 -1.15 5.32 30.72 0.16 -0.98 16 23 C -0.16 -1.71 6.13 30.69 0.19 -1.52 16 24 C 0.05 0.66 6.84 72.01 0.49 1.15 16 25 O -0.41 -9.01 10.77 -148.98 -1.60 -10.61 16 26 C 0.06 1.22 5.84 72.01 0.42 1.64 16 27 C 0.12 2.51 6.43 86.36 0.56 3.07 16 28 C -0.12 -3.00 5.36 30.67 0.16 -2.84 16 29 H 0.00 -0.17 7.42 -2.39 -0.02 -0.19 16 30 H 0.01 0.81 7.19 -2.39 -0.02 0.79 16 31 H 0.03 1.32 7.84 -2.39 -0.02 1.30 16 32 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 33 H 0.05 1.69 8.03 -2.39 -0.02 1.67 16 34 H 0.06 2.05 6.26 -2.39 -0.01 2.03 16 35 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.09 1.55 6.50 -2.39 -0.02 1.53 16 40 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.11 0.81 5.93 -2.39 -0.01 0.79 16 42 H 0.12 1.05 7.69 -2.39 -0.02 1.03 16 43 H 0.12 0.82 7.94 -2.39 -0.02 0.80 16 44 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 46 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 47 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 49 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 50 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 51 H 0.08 2.06 6.02 -2.39 -0.01 2.04 16 52 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 53 H 0.07 1.83 7.01 -2.38 -0.02 1.81 16 54 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 55 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -73.89 412.44 3.31 -70.58 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: 0.83 Total: 10.94 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: 6.43 Total: 2.60 kcal Atomic # 7 Polarization: -99.18 SS G_CDS: -4.33 Total: -103.51 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -1.64 Total: -28.08 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -73.89 3.31 -70.58 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698955957.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.672 kcal (2) G-P(sol) polarization free energy of solvation -73.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds